Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018483

Physical Location & Seq

Genomic Coordinates Reverse (-)

22768358 .. 22770763

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2406 bp

ATGTATAAACTGAAACATCAAGAAACAGGCTTCTTCTCCCTCAAACTTGATATCAGTAAAGCCTATGATAGACTTGAGTGGAAATTCTTGCAGTCTATGTTAGAAAAGCTTGGTTTTCATCCTACCTGGATTGCAATGATCATGAACTGTGTTACCTCCGTTAGCTACTCTATTTTGATTCAAGGAGAACCTACAGGAAGGATTATACCTACCAGAGGCATCAGACAGGGAGACCCATTATCGCCTTATTTATTAATCTTATGTGCAGAGGGCTTGTCTGCTTTGATAACGAGGTCTGTAAAGAATCATACAATTCAGGGACTCACTATGTGCCCGAATGCTCCCACTCTCCGTCATTTATTATTTGCAAATGATAGCTTTCTATTTGGTACAGCCACTGAAGCAAAATGTTATGGTTACAGAACCATCCTTGACAATTATGCAAGGGCCTCTGGACAAAAGGTCAACTTCCAAAAAAGTAGTGTAGTGTTCAGCAATAATGTCCACATGGATACACAATTACAGTTGGCCTCTATTCTAGATGTACAGAGAGTGGATGAGCATGACAGATATTTAGGCTTACCATTACGAGTTGGTAAATCAAAAACAGCCATCTTTGCATACATCAAAGAAAAGTTGACCAAAAAGCTAATCAGTTGGAAAACAAAGATACTCAGTTGTGCAGGTAAAGAGATTTTGATTAAAGCTGTTGCACAGACTATGCCATTATATGCTATGAACTGCTATTTGCTTCCAAGAGGTCTTTGTGATGACATCCATCAGCTATGTGCTTCTTTCTTTTGGGGTGATATTGAGGAGCAAAGGAAAATCCACTGGCGCAGCTGGGAAAGAATGTGTCTCACAAAGCATGAGGGAGGTATGGGTTTTAAAAATATATATGCTTACAATTTAGCAATGCTTGCAAAGCAGGGATGGAGAATTGTCACAAATCCCAACTCTTTAATAGCACAATTATACAAAGCTAGATATTTCCCATACAGTACCTTTTGGGATGCTGAACTTGGAGAATCACCTTCCTTTTCTTGGAGGAGTATTATTCATGGAAGACCAGTCCTAAAAGCCGGTATACAATGGAAGATTAGAGTTGGAAATCTAGTTAACATATGGTCAGATCGATGGATTCCTACTGCCCAACAATTTCATATTTCACGGCCCCAACATACTCATTGTGAAAAGGTAGCTGATCTTATTAATTCTCATACTAGAGAGTGGAAACCTGCCACGGTCCAAGCTTTATTTCCGGATGATATTGCTACAAAAATCCGATGCATTCCATTGAGCAGACAAGCCAACCAAGACAGACTTGTTTGGAGTTTGGAGAGGAGAGGTTTTTTCTCGGTGAAAACGGCATATTGGATTGCACGAGACCAAGTGCTGCAACAACTTCTCACCTCAACATCCAATGGTAATCTGTATAAGGAGCTATGGAACAAGATTTGGAAAGCAAGAGTACCGGGGAAGGTTCAAATATGTGTGTGGAGAGCTTGCAACAACTTGTTAGCTACAAGGGAAAGGCTGCTTACCAAAGGTTACAATGGAGATATTAATTGTCTACTTTGTAGTCATCCCATTGAAGATCACTCCCATTTGTTCTGTAAGTGCCCCATTGTCGAGCAGATTCTTGTGGCTTCACCTTTTAACTTGCAGGACAGTTTGCTACCTAATATCAATTTCAAAGAATGGATGTTAGAGAGAGCAATGAGCCTCCAACCACAAACATTTGCAAAGTTGTTGATGATTATTTGGGCTATTTGGAAAAACAGGAACAATATGTTATGGTCTGGCACTCAACAAACTGCTCAAGATTTGATGCTAAGTTGTTTTACATGGTTGGAGGACTTTCAGAAAGCCAGAGCTGGCGTTTCCAAACCGGTAAAACCGAACAGGCAGAACTGGTTGCCTGCAGCTAGTGGTCGTCATAAACTTAACGTGGATGTTGCCTTCATACCCAATCAAAATAATGGTGGAACTGGAGGTGTAATCCGAGATGATAATGTACAGTTTATTGCGGTCTTTGCTCGACTAGTTCCATGCACAGCCTCACCTAAACAATGTAAGCTTCTGGCAATCCGCGAGGGCATTGATCTACTGTATTCACTTCAACTCAATGAAGTCACCGTTGAAAGTGACTGCATGGAAGCCATTCAGGAGATCCATTGTCCTAATTATGAACTGTTGGCTAATGGCAATATTATCGATGACATCCATCGTACTTGGAGGAAACTGAGAGGTGTGAACCTCGTCTACACTCCTAGAACTTGTAATATGGTGGCACACCGTTTAGCAGCTATAGGCTTTGAAGCAACCCAGGGTGTTGTCTGGATGGATCAAGCACCAGAATGTATTTTCGATGTGCTTGATAAAGACTGTAAACAGCTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

801

Amino Acids

91.78

Weight (kDa)

9.23

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	13 - 185	3.7e-13	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	452 - 546	1.2e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	650 - 770	6.3e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018483)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227000.v1.1 MD07G1086500.v1.1 MD13G1075300.v1.1
prunus_persica	Prupe.2G112900_v2.0.a1 Prupe.2G112900_v2.0.a1 Prupe.3G128800_v2.0.a1
rosa_multiflora	Rmu_sc0000335.1_g000025 Rmu_sc0006326.1_g000029
rosa_rugosa	Rorug01G0166900
rosa_samantha	Rh1AG182600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	674, 1246
AccI	GTMKAC	3 cut(s)	1087, 1573, 2265
AccII	CGCG	1 cut(s)	2094
AccIII	TCCGGA	1 cut(s)	1261
AciI	CCGC	2 cut(s)	2030, 2092
AclWI	GGATC	2 cut(s)	2167, 2355
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	420
AdeI	CACNNNGTG	1 cut(s)	330
AfaI	GTAC	6 cut(s)	391, 546, 1003, 1473, 2019, 2233
AfiI	CCNNNNNNNGG	2 cut(s)	215, 1044
AgeI	ACCGGT	1 cut(s)	1891
AgsI	TTSAA	7 cut(s)	182, 1487, 1595, 1696, 2123, 2144, 2321
AhdI	GACNNNNNGTC	1 cut(s)	461
AhlI	ACTAGT	1 cut(s)	2044
AjnI	CCWGG	2 cut(s)	125, 2328
AjuI	GAANNNNNNNTTGG	2 cut(s)	1242, 1274
Alw26I	GTCTC	3 cut(s)	225, 863, 1380
AlwI	GGATC	2 cut(s)	2167, 2355
AlwNI	CAGNNNCTG	1 cut(s)	398
Aor13HI	TCCGGA	1 cut(s)	1261
AoxI	GGCC	3 cut(s)	447, 528, 1172
ApeKI	GCWGC	5 cut(s)	840, 1396, 1537, 1925, 2306
ApoI	RAATTY	1 cut(s)	83
AseI	ATTAAT	3 cut(s)	254, 1212, 1566
AsiGI	ACCGGT	1 cut(s)	1891
Asp700I	GAANNNNTTC	1 cut(s)	2163
AspLEI	GCGC	1 cut(s)	840
AspS9I	GGNCC	3 cut(s)	447, 1173, 1246
AsuC2I	CCSGG	1 cut(s)	1476
AsuHPI	GGTGA	7 cut(s)	818, 1023, 1372, 1402, 1644, 2055, 2128
AvaII	GGWCC	1 cut(s)	1246
BaeGI	GKGCMC	2 cut(s)	335, 1625
BauI	CACGAG	1 cut(s)	1383
BbsI	GAAGAC	1 cut(s)	1072
BbvI	GCAGC	5 cut(s)	852, 1383, 1524, 1937, 2318
BccI	CCATC	7 cut(s)	434, 620, 786, 927, 1131, 2235, 2338
BceAI	ACGGC	2 cut(s)	1187, 1383
BcgI	CGANNNNNNTGC	2 cut(s)	2197, 2231
BciT130I	CCWGG	2 cut(s)	127, 2330
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	1476
BcoDI	GTCTC	3 cut(s)	225, 863, 1380
BcuI	ACTAGT	1 cut(s)	2044
BfaI	CTAG	7 cut(s)	539, 984, 1115, 1224, 1929, 2045, 2274
BfmI	CTRYAG	3 cut(s)	192, 1923, 2310
BfuAI	ACCTGC	2 cut(s)	674, 1246
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	5 cut(s)	841, 1397, 1538, 1926, 2307
BlsI	GCNGC	5 cut(s)	842, 1398, 1539, 1927, 2308
Bme1390I	CCNGG	3 cut(s)	127, 1476, 2330
Bme18I	GGWCC	1 cut(s)	1246
BmeRI	GACNNNNNGTC	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	447, 1173, 1246
BmiI	GGNNCC	1 cut(s)	1175
BmrFI	CCNGG	3 cut(s)	127, 1476, 2330
BmsI	GCATC	4 cut(s)	228, 1003, 1277, 1821
BpiI	GAAGAC	1 cut(s)	1072
BpmI	CTGGAG	1 cut(s)	2013
BpuEI	CTTGAG	2 cut(s)	95, 1806
BpuMI	CCSGG	1 cut(s)	1476
Bsa29I	ATCGAT	2 cut(s)	1135, 2217
BsaI	GGTCTC	2 cut(s)	225, 1380
BsaJI	CCNNGG	4 cut(s)	1242, 1475, 2328, 2329
BsaWI	WCCGGW	2 cut(s)	1261, 1891
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 1044
Bse118I	RCCGGY	2 cut(s)	1082, 1891
Bse1I	ACTGG	4 cut(s)	839, 1070, 1919, 1996
Bse3DI	GCAATG	3 cut(s)	141, 921, 1725
BseAI	TCCGGA	1 cut(s)	1261
BseBI	CCWGG	2 cut(s)	127, 2330
BseCI	ATCGAT	2 cut(s)	1135, 2217
BseDI	CCNNGG	4 cut(s)	1242, 1475, 2328, 2329
BseLI	CCNNNNNNNGG	2 cut(s)	215, 1044
BseMI	GCAATG	3 cut(s)	141, 921, 1725
BseMII	CTCAG	2 cut(s)	688, 2237
BseNI	ACTGG	4 cut(s)	839, 1070, 1919, 1996
BseRI	GAGGAG	3 cut(s)	830, 1063, 1357
BseSI	GKGCMC	2 cut(s)	335, 1625
BseXI	GCAGC	5 cut(s)	852, 1383, 1524, 1937, 2318
BseYI	CCCAGC	1 cut(s)	843
BsgI	GTGCAG	2 cut(s)	285, 702
Bsh1236I	CGCG	1 cut(s)	2094
BshFI	GGCC	3 cut(s)	449, 530, 1174
BshTI	ACCGGT	1 cut(s)	1891
BshVI	ATCGAT	2 cut(s)	1135, 2217
BsiSI	CCGG	4 cut(s)	1083, 1262, 1475, 1892
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	215, 1044
BsmAI	GTCTC	3 cut(s)	225, 863, 1380
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	2 cut(s)	343, 1290
BsnI	GGCC	3 cut(s)	449, 530, 1174
Bso31I	GGTCTC	2 cut(s)	225, 1380
Bsp1286I	GDGCHC	2 cut(s)	335, 1625
Bsp13I	TCCGGA	1 cut(s)	1261
Bsp1407I	TGTACA	2 cut(s)	544, 2017
Bsp143I	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
BspACI	CCGC	2 cut(s)	2030, 2092
BspANI	GGCC	3 cut(s)	449, 530, 1174
BspCNI	CTCAG	2 cut(s)	687, 2238
BspDI	ATCGAT	2 cut(s)	1135, 2217
BspEI	TCCGGA	1 cut(s)	1261
BspFNI	CGCG	1 cut(s)	2094
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	1175
BspMAI	CTGCAG	1 cut(s)	1927
BspMI	ACCTGC	2 cut(s)	674, 1246
BspPI	GGATC	2 cut(s)	2167, 2355
BspTNI	GGTCTC	2 cut(s)	225, 1380
BsrDI	GCAATG	3 cut(s)	141, 921, 1725
BsrFI	RCCGGY	2 cut(s)	1082, 1891
BsrGI	TGTACA	2 cut(s)	544, 2017
BsrI	ACTGG	4 cut(s)	839, 1070, 1919, 1996
BssAI	RCCGGY	2 cut(s)	1082, 1891
BssECI	CCNNGG	4 cut(s)	1242, 1475, 2328, 2329
BssMI	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
BssNAI	GTATAC	1 cut(s)	1088
BssSI	CACGAG	1 cut(s)	1383
Bst1107I	GTATAC	1 cut(s)	1088
Bst2BI	CACGAG	1 cut(s)	1383
Bst2UI	CCWGG	2 cut(s)	127, 2330
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstAUI	TGTACA	2 cut(s)	544, 2017
BstC8I	GCNNGC	4 cut(s)	921, 1507, 1879, 1923
BstDEI	CTNAG	3 cut(s)	674, 1835, 2246
BstDSI	CCRYGG	1 cut(s)	1242
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	2094
BstHHI	GCGC	1 cut(s)	840
BstKTI	GATC	7 cut(s)	141, 1135, 1207, 1600, 2107, 2175, 2350
BstMAI	GTCTC	3 cut(s)	225, 863, 1380
BstMBI	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
BstMWI	GCNNNNNNNGC	5 cut(s)	401, 617, 920, 925, 2036
BstNI	CCWGG	2 cut(s)	127, 2330
BstSCI	CCNGG	3 cut(s)	125, 1474, 2328
BstSFI	CTRYAG	3 cut(s)	192, 1923, 2310
BstSLI	GKGCMC	2 cut(s)	335, 1625
BstUI	CGCG	1 cut(s)	2094
BstV1I	GCAGC	5 cut(s)	852, 1383, 1524, 1937, 2318
BstV2I	GAAGAC	1 cut(s)	1072
BstX2I	RGATCY	1 cut(s)	2172
BstYI	RGATCY	1 cut(s)	2172
BstZ17I	GTATAC	1 cut(s)	1088
Bsu15I	ATCGAT	2 cut(s)	1135, 2217
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	3 cut(s)	449, 530, 1174
BsuTUI	ATCGAT	2 cut(s)	1135, 2217
BtgI	CCRYGG	1 cut(s)	1242
BtsIMutI	CAGTG	2 cut(s)	396, 832
BveI	ACCTGC	2 cut(s)	674, 1246
Cac8I	GCNNGC	4 cut(s)	921, 1507, 1879, 1923
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	141
CfoI	GCGC	1 cut(s)	840
Cfr10I	RCCGGY	2 cut(s)	1082, 1891
Cfr13I	GGNCC	3 cut(s)	447, 1173, 1246
ClaI	ATCGAT	2 cut(s)	1135, 2217
Csp6I	GTAC	6 cut(s)	390, 545, 1002, 1472, 2018, 2232
CspAI	ACCGGT	1 cut(s)	1891
CviAII	CATG	8 cut(s)	142, 508, 563, 869, 1061, 1848, 2052, 2155
CviQI	GTAC	6 cut(s)	390, 545, 1002, 1472, 2018, 2232
DdeI	CTNAG	3 cut(s)	674, 1835, 2246
DpnI	GATC	7 cut(s)	140, 1134, 1206, 1599, 2106, 2174, 2349
DpnII	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
DraI	TTTAAA	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	330
DriI	GACNNNNNGTC	1 cut(s)	461
Eam1105I	GACNNNNNGTC	1 cut(s)	461
Eco31I	GGTCTC	2 cut(s)	225, 1380
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	1246
Eco57I	CTGAAG	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	125, 2328
EcoRV	GATATC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	1292
FaeI	CATG	8 cut(s)	145, 511, 566, 872, 1064, 1851, 2055, 2158
FalI	AAGNNNNNCTT	4 cut(s)	452, 484, 1308, 1340
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	8 cut(s)	141, 507, 562, 868, 1060, 1847, 2051, 2154
FauNDI	CATATG	1 cut(s)	1124
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	3 cut(s)	1087, 1573, 2265
Fnu4HI	GCNGC	5 cut(s)	841, 1397, 1538, 1926, 2307
Fsp4HI	GCNGC	5 cut(s)	841, 1397, 1538, 1926, 2307
FspBI	CTAG	7 cut(s)	539, 984, 1115, 1224, 1929, 2045, 2274
GlaI	GCGC	1 cut(s)	839
GluI	GCNGC	5 cut(s)	841, 1397, 1538, 1926, 2307
GsaI	CCCAGC	1 cut(s)	847
GsuI	CTGGAG	1 cut(s)	2013
HaeIII	GGCC	3 cut(s)	449, 530, 1174
HapII	CCGG	4 cut(s)	1083, 1262, 1475, 1892
HhaI	GCGC	1 cut(s)	840
Hin1II	CATG	8 cut(s)	145, 511, 566, 872, 1064, 1851, 2055, 2158
Hin6I	GCGC	1 cut(s)	838
HinP1I	GCGC	1 cut(s)	838
HincII	GTYRAC	3 cut(s)	466, 639, 1120
HindII	GTYRAC	3 cut(s)	466, 639, 1120
HindIII	AAGCTT	3 cut(s)	107, 1251, 2078
HinfI	GANTC	6 cut(s)	178, 304, 321, 1028, 1141, 1639
HpaI	GTTAAC	1 cut(s)	1120
HpaII	CCGG	4 cut(s)	1083, 1262, 1475, 1892
HphI	GGTGA	7 cut(s)	818, 1023, 1372, 1402, 1644, 2055, 2128
Hpy166II	GTNNAC	9 cut(s)	466, 505, 639, 1088, 1120, 1574, 2257, 2266, 2393
Hpy188I	TCNGA	5 cut(s)	224, 1132, 1286, 1866, 2006
Hpy188III	TCNNGA	8 cut(s)	20, 142, 453, 539, 1262, 1823, 2168, 2341
Hpy8I	GTNNAC	9 cut(s)	466, 505, 639, 1088, 1120, 1574, 2257, 2266, 2393
HpyAV	CCTTC	4 cut(s)	192, 1044, 1474, 1972
HpyCH4IV	ACGT	1 cut(s)	1950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	401, 617, 920, 925, 2036
HpyF3I	CTNAG	3 cut(s)	674, 1835, 2246
HpySE526I	ACGT	1 cut(s)	1950
Hsp92II	CATG	8 cut(s)	145, 511, 566, 872, 1064, 1851, 2055, 2158
HspAI	GCGC	1 cut(s)	838
Kpn2I	TCCGGA	1 cut(s)	1261
Ksp22I	TGATCA	1 cut(s)	138
KspAI	GTTAAC	1 cut(s)	1120
Kzo9I	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
LmnI	GCTCC	3 cut(s)	346, 817, 1441
Lsp1109I	GCAGC	5 cut(s)	852, 1383, 1524, 1937, 2318
LweI	GCATC	4 cut(s)	228, 1003, 1277, 1821
MaeI	CTAG	7 cut(s)	539, 984, 1115, 1224, 1929, 2045, 2274
MaeII	ACGT	1 cut(s)	1950
MaeIII	GTNAC	6 cut(s)	151, 416, 943, 1550, 2134, 2147
MalI	GATC	7 cut(s)	140, 1134, 1206, 1599, 2106, 2174, 2349
MboI	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
MboII	GAAGA	4 cut(s)	25, 1077, 1108, 1607
MflI	RGATCY	1 cut(s)	2172
MhlI	GDGCHC	2 cut(s)	335, 1625
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	4 cut(s)	638, 1087, 1753, 1833
Mph1103I	ATGCAT	1 cut(s)	1292
MroI	TCCGGA	1 cut(s)	1261
MroXI	GAANNNNTTC	1 cut(s)	2163
MseI	TTAA	9 cut(s)	254, 702, 888, 962, 1119, 1212, 1566, 1659, 1947
MslI	CAYNNNNRTG	1 cut(s)	2359
MspA1I	CMGCKG	1 cut(s)	843
MspI	CCGG	4 cut(s)	1083, 1262, 1475, 1892
MspR9I	CCNGG	3 cut(s)	127, 1476, 2330
Mva1269I	GAATGC	2 cut(s)	343, 1290
MvaI	CCWGG	2 cut(s)	127, 2330
MvnI	CGCG	1 cut(s)	2094
MwoI	GCNNNNNNNGC	5 cut(s)	401, 617, 920, 925, 2036
NciI	CCSGG	1 cut(s)	1476
NdeI	CATATG	1 cut(s)	1124
NdeII	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
NlaIII	CATG	8 cut(s)	145, 511, 566, 872, 1064, 1851, 2055, 2158
NlaIV	GGNNCC	1 cut(s)	1175
NmuCI	GTSAC	3 cut(s)	943, 2134, 2147
NsiI	ATGCAT	1 cut(s)	1292
PagI	TCATGA	1 cut(s)	141
PasI	CCCWGGG	1 cut(s)	2329
PctI	GAATGC	2 cut(s)	343, 1290
PdmI	GAANNNNTTC	1 cut(s)	2163
PfeI	GAWTC	5 cut(s)	178, 304, 1028, 1141, 1639
PinAI	ACCGGT	1 cut(s)	1891
PkrI	GCNGC	5 cut(s)	842, 1398, 1539, 1927, 2308
PleI	GAGTC	1 cut(s)	315
PpsI	GAGTC	1 cut(s)	315
PshBI	ATTAAT	3 cut(s)	254, 1212, 1566
Psp6I	CCWGG	2 cut(s)	125, 2328
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	2 cut(s)	125, 2328
PspN4I	GGNNCC	1 cut(s)	1175
PspPI	GGNCC	3 cut(s)	447, 1173, 1246
PsrI	GAACNNNNNNTAC	2 cut(s)	2249, 2281
PstI	CTGCAG	1 cut(s)	1927
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	2172
PvuII	CAGCTG	1 cut(s)	843
RsaI	GTAC	6 cut(s)	391, 546, 1003, 1473, 2019, 2233
RsaNI	GTAC	6 cut(s)	390, 545, 1002, 1472, 2018, 2232
RseI	CAYNNNNRTG	1 cut(s)	2359
SaqAI	TTAA	9 cut(s)	254, 702, 888, 962, 1119, 1212, 1566, 1659, 1947
SatI	GCNGC	5 cut(s)	841, 1397, 1538, 1926, 2307
Sau3AI	GATC	7 cut(s)	138, 1132, 1204, 1597, 2104, 2172, 2347
Sau96I	GGNCC	3 cut(s)	447, 1173, 1246
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	3 cut(s)	127, 1476, 2330
SduI	GDGCHC	2 cut(s)	335, 1625
SfaNI	GCATC	4 cut(s)	228, 1003, 1277, 1821
SfcI	CTRYAG	3 cut(s)	192, 1923, 2310
SinI	GGWCC	1 cut(s)	1246
SmiMI	CAYNNNNRTG	1 cut(s)	2359
SmlI	CTYRAG	2 cut(s)	74, 1821
SmoI	CTYRAG	2 cut(s)	74, 1821
SpeI	ACTAGT	1 cut(s)	2044
SsiI	CCGC	2 cut(s)	2030, 2092
SspI	AATATT	1 cut(s)	2212
SspMI	CTAG	7 cut(s)	539, 984, 1115, 1224, 1929, 2045, 2274
StyD4I	CCNGG	3 cut(s)	125, 1474, 2328
TaiI	ACGT	1 cut(s)	1953
TaqI	TCGA	5 cut(s)	1135, 1632, 2041, 2217, 2370
TatI	WGTACW	2 cut(s)	544, 2017
TfiI	GAWTC	5 cut(s)	178, 304, 1028, 1141, 1639
Tru1I	TTAA	9 cut(s)	254, 702, 888, 962, 1119, 1212, 1566, 1659, 1947
Tru9I	TTAA	9 cut(s)	254, 702, 888, 962, 1119, 1212, 1566, 1659, 1947
TscAI	CASTG	2 cut(s)	403, 839
TseFI	GTSAC	3 cut(s)	943, 2134, 2147
TseI	GCWGC	5 cut(s)	840, 1396, 1537, 1925, 2306
Tsp45I	GTSAC	3 cut(s)	943, 2134, 2147
TspDTI	ATGAA	8 cut(s)	107, 158, 752, 1049, 1151, 1954, 2145, 2205
TspGWI	ACGGA	2 cut(s)	148, 341
TspRI	CASTG	2 cut(s)	403, 839
VpaK11BI	GGWCC	1 cut(s)	1246
VspI	ATTAAT	3 cut(s)	254, 1212, 1566
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	83
XbaI	TCTAGA	1 cut(s)	538
XmiI	GTMKAC	3 cut(s)	1087, 1573, 2265
XmnI	GAANNNNTTC	1 cut(s)	2163
XspI	CTAG	7 cut(s)	539, 984, 1115, 1224, 1929, 2045, 2274
Zsp2I	ATGCAT	1 cut(s)	1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.