Rmu_sc0000335.1_g000025

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000335.1
Physical Location & Seq
Forward (+)
106493 .. 107018
526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000335.1_g000025.1.cds

Sequence Viewer

Length: 432 bp
atggacaagtctagtgatactctacatgaatcttcactcaggaaagaggaatcacctgatgtggttcatctaacccatttaacaacaactaagtccatctaccgactcccactggcatttgcttccttggcctctaatccacacacttcaacatggtacttatggttgttgtggcctgtgacgttatggtccttgatgctaacttggatatttggccgttcatttgttattgagaggcagcgttttgataaacacagactacaaacttgggttattccaaaatacagtctgcagtacttgctctcatggcaaaatgaagctataaacagagcgattgaggatgccatacttgaagctgagcaaatgggtgtcaaagttataagtttaggtctctttaatcaggtaactacagtgtgtaagtgtgtgggttaa

Protein Analysis

143

Amino Acids

16.62

Weight (kDa)

7.83

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AasI GACNNNNNNGTC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 214
AfaI GTAC 2 cut(s) 158, 296
AgsI TTSAA 2 cut(s) 150, 353
AluBI AGCT 2 cut(s) 320, 356
AluI AGCT 2 cut(s) 320, 356
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 3 cut(s) 129, 173, 214
ApeKI GCWGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 290, 408
BisI GCNGC 1 cut(s) 239
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 240
BmcAI AGTACT 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmsI GCATC 2 cut(s) 186, 331
Bpu1102I GCTNAGC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 52, 348
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 250
BshFI GGCC 3 cut(s) 131, 175, 216
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 3 cut(s) 131, 175, 216
Bso31I GGTCTC 1 cut(s) 395
Bsp1720I GCTNAGC 1 cut(s) 357
BspANI GGCC 3 cut(s) 131, 175, 216
BspCNI CTCAG 2 cut(s) 51, 349
BspMAI CTGCAG 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 395
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 287, 412
BstAPI GCANNNNNTGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 38, 90, 357
BstF5I GGATG 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 395
BstMWI GCNNNNNNNGC 3 cut(s) 128, 298, 307
BstSFI CTRYAG 2 cut(s) 290, 408
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 131, 175, 216
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 110, 417
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 157, 295
CviAII CATG 3 cut(s) 26, 153, 306
CviJI RGCY 5 cut(s) 131, 175, 216, 320, 356
CviKI_1 RGCY 5 cut(s) 131, 175, 216, 320, 356
CviQI GTAC 2 cut(s) 157, 295
DdeI CTNAG 3 cut(s) 38, 90, 357
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 29, 156, 309
FaiI YATR 8 cut(s) 27, 154, 163, 187, 307, 323, 347, 380
FatI CATG 3 cut(s) 25, 152, 305
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 239
HaeIII GGCC 3 cut(s) 131, 175, 216
Hin1II CATG 3 cut(s) 29, 156, 309
HinfI GANTC 3 cut(s) 29, 50, 105
HphI GGTGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 40
HpyCH4III ACNGT 2 cut(s) 287, 412
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 298, 307
HpyF3I CTNAG 3 cut(s) 38, 90, 357
HpySE526I ACGT 1 cut(s) 182
Hsp92II CATG 3 cut(s) 29, 156, 309
LpnPI CCDG 5 cut(s) 25, 69, 98, 189, 386
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 186, 331
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 2 cut(s) 178, 403
MboII GAAGA 1 cut(s) 24
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 4 cut(s) 40, 142, 228, 331
MseI TTAA 3 cut(s) 80, 396, 430
MwoI GCNNNNNNNGC 3 cut(s) 128, 298, 307
NlaIII CATG 3 cut(s) 29, 156, 309
NmuCI GTSAC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 29, 50
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 380
PspPI GGNCC 1 cut(s) 189
PstI CTGCAG 1 cut(s) 294
RsaI GTAC 2 cut(s) 158, 296
RsaNI GTAC 2 cut(s) 157, 295
SaqAI TTAA 3 cut(s) 80, 396, 430
SatI GCNGC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 189
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 99
SetI ASST 6 cut(s) 58, 185, 322, 358, 391, 405
SfaNI GCATC 2 cut(s) 186, 331
SfcI CTRYAG 2 cut(s) 290, 408
SinI GGWCC 1 cut(s) 189
SspMI CTAG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 287, 412
TaiI ACGT 1 cut(s) 185
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 2 cut(s) 29, 50
Tru1I TTAA 3 cut(s) 80, 396, 430
Tru9I TTAA 3 cut(s) 80, 396, 430
TscAI CASTG 2 cut(s) 117, 417
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 4 cut(s) 42, 56, 210, 330
TspRI CASTG 2 cut(s) 117, 417
VpaK11BI GGWCC 1 cut(s) 189
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.