Rh1AG182600

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
34642840 .. 34643354
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG182600.1

Sequence Viewer

Length: 417 bp
ATGGAAAAGACTAGTGATGAACTGTATGAATCTTCACTCAAAAGAAAAGATGAAGCTCCAGATGTGTTGCATCTAACCCATCTTACAACACCCGACTCCATCTATCAACTTCCTTTGGGATTTGCTTCTTTGGCCTCTGAGCCGCACACTTCAACATGGTACATGTGGTTGATGTGGCCTGTTACATTTTGGTCGATGATGCTCACATGGATTTATGGTCGCACATTTGTGGTTGAGAGGCAGCAGTTTGATAAACTCAAATTACAAACTTGGGCGTTCCCAAAATACAATTTGCAATACTTCTTGCCATGGCAAAATGAAGCTATCAACAGTTTGATTGAGGAAGCTATACTTAAAGCAGAGGAAAAGGGTGTCAAAGTTGTAAGTTTGGGGCTCTTAAACCAGGCAAGTCTCTAG

Protein Analysis

138

Amino Acids

16.19

Weight (kDa)

5.32

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AfaI GTAC 1 cut(s) 161
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 153
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 402
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 3 cut(s) 56, 323, 347
AluI AGCT 3 cut(s) 56, 323, 347
AoxI GGCC 2 cut(s) 132, 176
ApeKI GCWGC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 253
BccI CCATC 2 cut(s) 87, 107
BciT130I CCWGG 1 cut(s) 404
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 415
BisI GCNGC 2 cut(s) 143, 242
BlsI GCNGC 2 cut(s) 144, 243
Bme1390I CCNGG 1 cut(s) 404
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 2 cut(s) 79, 189
BpmI CTGGAG 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 253
BshFI GGCC 2 cut(s) 134, 178
BsnI GGCC 2 cut(s) 134, 178
Bsp1286I GDGCHC 1 cut(s) 396
Bsp19I CCATGG 1 cut(s) 308
BspACI CCGC 1 cut(s) 143
BspANI GGCC 2 cut(s) 134, 178
BspCNI CTCAG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 308
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 24, 332
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 134, 178
BtgI CCRYGG 1 cut(s) 308
Csp6I GTAC 1 cut(s) 160
CviAII CATG 4 cut(s) 156, 163, 207, 309
CviJI RGCY 7 cut(s) 56, 134, 142, 178, 323, 347, 394
CviKI_1 RGCY 7 cut(s) 56, 134, 142, 178, 323, 347, 394
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 4 cut(s) 159, 166, 210, 312
FaiI YATR 7 cut(s) 27, 157, 164, 208, 216, 310, 350
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 4 cut(s) 155, 162, 206, 308
Fnu4HI GCNGC 2 cut(s) 143, 242
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 143, 242
FspBI CTAG 2 cut(s) 12, 415
GluI GCNGC 2 cut(s) 143, 242
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 134, 178
Hin1II CATG 4 cut(s) 159, 166, 210, 312
HinfI GANTC 2 cut(s) 29, 95
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 24, 332
HpyCH4V TGCA 2 cut(s) 70, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 4 cut(s) 159, 166, 210, 312
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 72, 192, 389
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 2 cut(s) 79, 189
MaeI CTAG 2 cut(s) 12, 415
MaeIII GTNAC 1 cut(s) 181
MboII GAAGA 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 396
MluCI AATT 2 cut(s) 260, 289
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 4 cut(s) 145, 231, 334, 355
MseI TTAA 2 cut(s) 354, 398
MslI CAYNNNNRTG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 308
NlaIII CATG 4 cut(s) 159, 166, 210, 312
NspI RCATGY 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 227
PciI ACATGT 1 cut(s) 162
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 2 cut(s) 144, 243
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 2 cut(s) 354, 398
SatI GCNGC 2 cut(s) 143, 242
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 396
SetI ASST 3 cut(s) 58, 325, 349
SfaNI GCATC 2 cut(s) 79, 189
SmiMI CAYNNNNRTG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 260, 289
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 12, 415
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 24, 332
TaqI TCGA 1 cut(s) 194
TasI AATT 2 cut(s) 260, 289
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 354, 398
Tru9I TTAA 2 cut(s) 354, 398
TseI GCWGC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 33, 42, 66, 333
XceI RCATGY 1 cut(s) 166
XspI CTAG 2 cut(s) 12, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.