Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0018483

Physical Location & Seq

Genomic Coordinates Forward (+)

5324731 .. 5326746

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1075300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGGGAGTGGGCTTAGGGCTGGTTTGGTATTCCTGTGCTTTGAAAAAAAACTGCTGTGAGAATAAGCAGTTGTGCTCTGTGATTCACCCATTTGCGGAGCACATAGTATATTCCTTGCTCTTCTCAATACCAATGCTGGCAACTGTCTTCATGGGAACAGTTTCTGTCATATCCTTTGCTGGCTATATTACTTATATTGACTTCATGAATAACATGGGACATTGCAATTTTGAGCTCATCCCAAATTGCCTCTTCTCGCTCTTTCCTCCTCTCAAGTATCTTATGTATACCCCTTCGTTCCACTCTTTGCACCACACACAATTCCAAATCAATTACTCTCTCTTCATGCCATTCTACGACTACATATATGGCACCATGGACAAATCTACTGATTCACTCTATGAAACTTCACTCAAGAGAGAGGTGGAATCGCCAGATGTCCTTCATCTAACCCATCTAACAACACCCGAGTCCATCTATCATCTACCGCTAGGATTTGCTTCCTTGTCCTCTATGCCAGACACATCAAAATGGTACCTGTGGTTGATGTGGCCTGTGACATTCTGGTACATGGTGTTAATTCGGATCTGTGGTCGTACATTTGTGATTGAGAGGCAGCGCTTTAACAAGCTCAGATTACAAACTTGGGTTATACCCATATACACTTTGCAAAAAGGAGCTATCAATAGCTTGATTGAGGAAGCCATTGTTCAAGCTGAGAGAAAGGGTGTCAAATTTATAAGTCTCGGCCTCTTGAATCAGGCCAGTTTCTACCTACCAATATCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00073 ko01110 map00073 map01110

Pfam Domains

Protein Families

FA_hydroxylase Wax2_C

Protein Analysis

265

Amino Acids

30.62

Weight (kDa)

6.74

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	29 - 126	1e-11	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018483)

Species	Orthologous Gene IDs
malus_domestica	MD02G1227000.v1.1 MD07G1086500.v1.1 MD13G1075300.v1.1
prunus_persica	Prupe.2G112900_v2.0.a1 Prupe.2G112900_v2.0.a1 Prupe.3G128800_v2.0.a1
rosa_multiflora	Rmu_sc0000335.1_g000025 Rmu_sc0006326.1_g000029
rosa_rugosa	Rorug01G0166900
rosa_samantha	Rh1AG182600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	743
Acc65I	GGTACC	1 cut(s)	537
AccB1I	GGYRCC	2 cut(s)	374, 537
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	2 cut(s)	98, 491
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	1 cut(s)	737
AfaI	GTAC	3 cut(s)	539, 572, 601
AfeI	AGCGCT	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	46, 716, 760
AluBI	AGCT	5 cut(s)	238, 634, 683, 693, 719
AluI	AGCT	5 cut(s)	238, 634, 683, 693, 719
Alw21I	GWGCWC	3 cut(s)	80, 105, 240
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	1 cut(s)	596
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	470
Aor51HI	AGCGCT	1 cut(s)	623
AoxI	GGCC	3 cut(s)	554, 751, 765
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	163
Asp718I	GGTACC	1 cut(s)	537
AspLEI	GCGC	1 cut(s)	624
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	470
BanI	GGYRCC	2 cut(s)	374, 537
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	3 cut(s)	80, 105, 240
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	2 cut(s)	465, 485
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	625
BisI	GCNGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	376, 539
BpiI	GAAGAC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	2 cut(s)	260, 401
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	768
Bse3DI	GCAATG	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	3 cut(s)	649, 711, 780
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	631
BshFI	GGCC	3 cut(s)	556, 753, 767
BshNI	GGYRCC	2 cut(s)	374, 537
BsiHKAI	GWGCWC	3 cut(s)	80, 105, 240
BsiHKCI	CYCGRG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	556, 753, 767
BsoBI	CYCGRG	1 cut(s)	470
Bsp1286I	GDGCHC	3 cut(s)	80, 105, 240
Bsp143I	GATC	1 cut(s)	588
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	2 cut(s)	98, 491
BspANI	GGCC	3 cut(s)	556, 753, 767
BspCNI	CTCAG	3 cut(s)	648, 712, 781
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	376, 539
BspPI	GGATC	1 cut(s)	596
BspQI	GCTCTTC	1 cut(s)	128
BspT107I	GGYRCC	2 cut(s)	374, 537
BsrDI	GCAATG	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	1 cut(s)	588
BssNAI	GTATAC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	378
Bst1107I	GTATAC	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	148, 163
Bst6I	CTCTTC	3 cut(s)	128, 260, 350
BstC8I	GCNNGC	2 cut(s)	141, 184
BstDEI	CTNAG	4 cut(s)	16, 635, 720, 789
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	240
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BstZ17I	GTATAC	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	556, 753, 767
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	141, 184
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	1 cut(s)	624
Csp6I	GTAC	3 cut(s)	538, 571, 600
CviAII	CATG	6 cut(s)	154, 208, 217, 349, 379, 574
CviQI	GTAC	3 cut(s)	538, 571, 600
DdeI	CTNAG	4 cut(s)	16, 635, 720, 789
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
Eam1104I	CTCTTC	3 cut(s)	128, 260, 350
EarI	CTCTTC	3 cut(s)	128, 260, 350
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	6 cut(s)	157, 211, 220, 352, 382, 577
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	6 cut(s)	153, 207, 216, 348, 378, 573
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	3 cut(s)	556, 753, 767
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	6 cut(s)	157, 211, 220, 352, 382, 577
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	5 cut(s)	85, 395, 431, 473, 760
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	588, 638, 790
Hpy188III	TCNNGA	3 cut(s)	208, 418, 757
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	2 cut(s)	306, 455
HpyCH4III	ACNGT	2 cut(s)	148, 163
HpyCH4V	TGCA	3 cut(s)	228, 313, 673
HpyF3I	CTNAG	4 cut(s)	16, 635, 720, 789
Hsp92II	CATG	6 cut(s)	157, 211, 220, 352, 382, 577
HspAI	GCGC	1 cut(s)	622
KpnI	GGTACC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	588
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	100, 680
Lsp1109I	GCAGC	1 cut(s)	631
MaeI	CTAG	1 cut(s)	494
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MboII	GAAGA	4 cut(s)	115, 142, 247, 337
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	3 cut(s)	80, 105, 240
MluCI	AATT	6 cut(s)	229, 247, 323, 334, 582, 737
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	8 cut(s)	263, 279, 282, 418, 523, 609, 694, 764
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	2 cut(s)	581, 627
MslI	CAYNNNNRTG	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	1 cut(s)	588
NlaIII	CATG	6 cut(s)	157, 211, 220, 352, 382, 577
NlaIV	GGNNCC	2 cut(s)	376, 539
NmeAIII	GCCGAG	1 cut(s)	729
NmuCI	GTSAC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	4 cut(s)	85, 395, 431, 760
PkrI	GCNGC	1 cut(s)	621
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PsiI	TTATAA	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	376, 539
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	588
RsaI	GTAC	3 cut(s)	539, 572, 601
RsaNI	GTAC	3 cut(s)	538, 571, 600
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	581, 627
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	1 cut(s)	588
SchI	GAGTC	1 cut(s)	482
SduI	GDGCHC	3 cut(s)	80, 105, 240
SetI	ASST	8 cut(s)	240, 429, 543, 636, 685, 695, 721, 780
SmiMI	CAYNNNNRTG	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	275, 416
SmoI	CTYRAG	2 cut(s)	275, 416
Sse9I	AATT	6 cut(s)	229, 247, 323, 334, 582, 737
SsiI	CCGC	2 cut(s)	98, 491
SspMI	CTAG	1 cut(s)	494
SstI	GAGCTC	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	148, 163
TasI	AATT	6 cut(s)	229, 247, 323, 334, 582, 737
TfiI	GAWTC	4 cut(s)	85, 395, 431, 760
Tru1I	TTAA	2 cut(s)	581, 627
Tru9I	TTAA	2 cut(s)	581, 627
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	6 cut(s)	142, 196, 224, 337, 420, 437
XapI	RAATTY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.