Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007002

Physical Location & Seq

Genomic Coordinates Forward (+)

21333862 .. 21336544

Gene Structure 2683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1146300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCAAAGCTTTCATTCTTCATCTCCCAGTACCTCTGAGGATGACGGCATCCCAGAAGCTCCAGTTGCTCCAAAAGAATTCACATATTGTATTCAGCAACCAATCAAAGGCACTTTTTCTCCTCCTTCGCCTGGTTCACCTCTACAGGAGCACTTTGAATTCTCATCTAACAATAACGTGATAAACCGACTTGGGAAGGGCAACTGCAGTAGTCGCTCAGATCAAGAAAAGGTAAAGCCAAATAAGGTCACTTCACGACAGAACTCTTTAAAGGAGACAACACTAGCAACCGAGATGGATGTATCATTTAATGAGTACTCCAATACTGGGGCTTCCCAAGATTCTTGGGATGCAAACAAAGAGGAGGATCAGCCAAGAACCAACAAAGGGAGTGAATCATTTATTACGAACTTTATTAAGAAGAGCTTCAGGGATTTTTCCAAATCAAATCAGACAAATAATGGGAGAAGTAATGTTTCAGTTAATGGGCATTTAATACCAGATCGTGAGCTCAAGAAGGCAGAAAAGATGGCTGGAACAGTCCATCCTGGACAATATTGGTATGATTTCCGAGCTGGATTCTGGGGTGTCATGGGTGGCCCTGGTCTTGGCATTATTCCTCCATTTATTGAAGAATTCAACTATCCCATGCCTCAGAACTGTGCAGCTGGAGATACTGGTATTTTTGTGAATGGAAGGGAGCTTCACCATAAAGATTTGGATTTGCTGTCCAGTAGAGGACTTCCCACAACCAGAGATAGATCTTACATCATCGAGATCTCAGGGAGAGTCCTGGATGAAGACACCGGTGAAGAGCTTGATAGCCTTGGCAAGCTTGCCCCAACGGTTGAGAAGGTAAAACGTGGATTTGGCATGAAGCTTCCAAGAGCAGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_12

Protein Analysis

300

Amino Acids

33.04

Weight (kDa)

5.93

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46380 AT2G46380 AT3G61670 AT3G61670
fragaria_vesca	FvH4_7g16060 FvH4_7g16060 FvH4_7g16060 FvH4_7g16060 FvH4_7g16060
malus_domestica	MD01G1076900.v1.1 MD07G1146100.v1.1 MD07G1146300.v1.1
prunus_persica	Prupe.2G184400_v2.0.a1
pyrus_communis	pycom01g10600 pycom07g14570
rosa_chinensis	RchiOBHm_Chr1g0359001
rosa_laevigata	RLG00000027910
rosa_multiflora	Rmu_sc0001176.1_g000013
rosa_roxburghii	Rroxscaffold_4G00297470
rosa_rugosa	Rorug01G0267000
rosa_samantha	Rh1AG280300 Rh1BG247400 Rh1CG264700 Rh1DG275800
rosa_wichuraiana	Rw1G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	3 cut(s)	77, 158, 635
AcuI	CTGAAG	1 cut(s)	412
AfaI	GTAC	2 cut(s)	31, 317
AfiI	CCNNNNNNNGG	5 cut(s)	107, 131, 327, 387, 608
AgeI	ACCGGT	1 cut(s)	806
AgsI	TTSAA	3 cut(s)	158, 632, 640
AjnI	CCWGG	4 cut(s)	130, 547, 601, 792
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
Alw21I	GWGCWC	2 cut(s)	153, 513
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	375
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	3 cut(s)	665, 890, 893
ApoI	RAATTY	3 cut(s)	77, 158, 635
AsiGI	ACCGGT	1 cut(s)	806
Asp700I	GAANNNNTTC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	129, 698, 821
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	153, 513
BbvI	GCAGC	2 cut(s)	677, 880
BccI	CCATC	3 cut(s)	289, 523, 552
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	4 cut(s)	132, 549, 603, 794
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	2 cut(s)	143, 205
BglII	AGATCT	2 cut(s)	761, 777
BisI	GCNGC	3 cut(s)	666, 891, 894
BlsI	GCNGC	3 cut(s)	667, 892, 895
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	4 cut(s)	132, 549, 603, 794
BmgT120I	GGNCC	1 cut(s)	599
BmrFI	CCNGG	4 cut(s)	132, 549, 603, 794
BmrI	ACTGGG	2 cut(s)	21, 336
BmsI	GCATC	2 cut(s)	57, 340
BmuI	ACTGGG	2 cut(s)	21, 336
BpiI	GAAGAC	1 cut(s)	807
BpmI	CTGGAG	2 cut(s)	45, 690
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	601, 826
BsaWI	WCCGGW	1 cut(s)	806
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	5 cut(s)	107, 131, 327, 387, 608
Bse118I	RCCGGY	1 cut(s)	806
Bse1I	ACTGG	5 cut(s)	27, 62, 331, 682, 732
BseBI	CCWGG	4 cut(s)	132, 549, 603, 794
BseDI	CCNNGG	2 cut(s)	601, 826
BseGI	GGATG	6 cut(s)	46, 48, 304, 355, 544, 802
BseLI	CCNNNNNNNGG	5 cut(s)	107, 131, 327, 387, 608
BseMII	CTCAG	4 cut(s)	27, 231, 668, 795
BseNI	ACTGG	5 cut(s)	27, 62, 331, 682, 732
BseRI	GAGGAG	2 cut(s)	111, 377
BseXI	GCAGC	2 cut(s)	677, 880
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	600
BshTI	ACCGGT	1 cut(s)	806
BsiHKAI	GWGCWC	2 cut(s)	153, 513
BsiSI	CCGG	1 cut(s)	807
BslI	CCNNNNNNNGG	5 cut(s)	107, 131, 327, 387, 608
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	153, 513
Bsp143I	GATC	5 cut(s)	220, 367, 502, 761, 777
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	4 cut(s)	28, 230, 667, 794
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	1 cut(s)	375
BspQI	GCTCTTC	2 cut(s)	416, 807
BsrFI	RCCGGY	1 cut(s)	806
BsrI	ACTGG	5 cut(s)	27, 62, 331, 682, 732
BssAI	RCCGGY	1 cut(s)	806
BssECI	CCNNGG	2 cut(s)	601, 826
BssMI	GATC	5 cut(s)	220, 367, 502, 761, 777
BssT1I	CCWWGG	1 cut(s)	826
Bst2UI	CCWGG	4 cut(s)	132, 549, 603, 794
Bst4CI	ACNGT	3 cut(s)	541, 662, 847
Bst6I	CTCTTC	2 cut(s)	416, 807
BstC8I	GCNNGC	2 cut(s)	833, 837
BstDEI	CTNAG	4 cut(s)	36, 217, 654, 781
BstF5I	GGATG	6 cut(s)	46, 48, 304, 355, 544, 802
BstKTI	GATC	5 cut(s)	223, 370, 505, 764, 780
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	5 cut(s)	220, 367, 502, 761, 777
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 213
BstNI	CCWGG	4 cut(s)	132, 549, 603, 794
BstSCI	CCNGG	4 cut(s)	130, 547, 601, 792
BstSFI	CTRYAG	2 cut(s)	143, 205
BstV1I	GCAGC	2 cut(s)	677, 880
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	2 cut(s)	761, 777
BstYI	RGATCY	2 cut(s)	761, 777
BsuRI	GGCC	1 cut(s)	600
BtsCI	GGATG	6 cut(s)	46, 48, 304, 355, 544, 802
Cac8I	GCNNGC	2 cut(s)	833, 837
Cfr10I	RCCGGY	1 cut(s)	806
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	30, 316
CspAI	ACCGGT	1 cut(s)	806
CviAII	CATG	3 cut(s)	592, 649, 874
CviQI	GTAC	2 cut(s)	30, 316
DdeI	CTNAG	4 cut(s)	36, 217, 654, 781
DpnI	GATC	5 cut(s)	222, 369, 504, 763, 779
DpnII	GATC	5 cut(s)	220, 367, 502, 761, 777
DraI	TTTAAA	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	416, 807
EarI	CTCTTC	2 cut(s)	416, 807
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	513
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	511
EcoRI	GAATTC	3 cut(s)	77, 158, 635
EcoRII	CCWGG	4 cut(s)	130, 547, 601, 792
EcoT14I	CCWWGG	1 cut(s)	826
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	826
FaeI	CATG	3 cut(s)	595, 652, 877
FaiI	YATR	7 cut(s)	85, 564, 593, 650, 711, 875, 898
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	3 cut(s)	591, 648, 873
Fnu4HI	GCNGC	3 cut(s)	666, 891, 894
FokI	GGATG	6 cut(s)	35, 53, 311, 362, 531, 809
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	3 cut(s)	666, 891, 894
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	3 cut(s)	666, 891, 894
GsuI	CTGGAG	2 cut(s)	45, 690
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	3 cut(s)	595, 652, 877
HindIII	AAGCTT	3 cut(s)	7, 833, 878
HinfI	GANTC	4 cut(s)	341, 395, 579, 789
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	3 cut(s)	129, 698, 821
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	5 cut(s)	37, 220, 453, 572, 657
Hpy188III	TCNNGA	5 cut(s)	224, 255, 506, 514, 775
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	135, 190, 511, 690, 847
HpyCH4III	ACNGT	3 cut(s)	541, 662, 847
HpyCH4IV	ACGT	2 cut(s)	177, 862
HpyCH4V	TGCA	5 cut(s)	4, 207, 353, 665, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 213
HpyF3I	CTNAG	4 cut(s)	36, 217, 654, 781
HpySE526I	ACGT	2 cut(s)	177, 862
Hsp92II	CATG	3 cut(s)	595, 652, 877
Kzo9I	GATC	5 cut(s)	220, 367, 502, 761, 777
LguI	GCTCTTC	2 cut(s)	416, 807
LmnI	GCTCC	4 cut(s)	64, 73, 148, 700
Lsp1109I	GCAGC	2 cut(s)	677, 880
LweI	GCATC	2 cut(s)	57, 340
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	177, 862
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	5 cut(s)	222, 369, 504, 763, 779
MboI	GATC	5 cut(s)	220, 367, 502, 761, 777
MboII	GAAGA	5 cut(s)	9, 433, 644, 812, 824
MflI	RGATCY	2 cut(s)	761, 777
MhlI	GDGCHC	2 cut(s)	153, 513
MluCI	AATT	3 cut(s)	77, 158, 635
MlyI	GAGTC	1 cut(s)	798
MnlI	CCTC	9 cut(s)	31, 43, 132, 150, 355, 358, 630, 663, 731
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	5 cut(s)	269, 309, 417, 483, 494
MspA1I	CMGCKG	2 cut(s)	668, 893
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	4 cut(s)	132, 549, 603, 794
MvaI	CCWGG	4 cut(s)	132, 549, 603, 794
MwoI	GCNNNNNNNGC	2 cut(s)	65, 213
NdeII	GATC	5 cut(s)	220, 367, 502, 761, 777
NlaIII	CATG	3 cut(s)	595, 652, 877
NmuCI	GTSAC	1 cut(s)	247
PciSI	GCTCTTC	2 cut(s)	416, 807
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	3 cut(s)	341, 395, 579
PfoI	TCCNGGA	2 cut(s)	547, 792
PinAI	ACCGGT	1 cut(s)	806
PkrI	GCNGC	3 cut(s)	667, 892, 895
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	513
Psp6I	CCWGG	4 cut(s)	130, 547, 601, 792
PspGI	CCWGG	4 cut(s)	130, 547, 601, 792
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	209
PsuI	RGATCY	2 cut(s)	761, 777
PvuII	CAGCTG	2 cut(s)	668, 893
RsaI	GTAC	2 cut(s)	31, 317
RsaNI	GTAC	2 cut(s)	30, 316
SacI	GAGCTC	1 cut(s)	513
SapI	GCTCTTC	2 cut(s)	416, 807
SaqAI	TTAA	5 cut(s)	269, 309, 417, 483, 494
SatI	GCNGC	3 cut(s)	666, 891, 894
Sau3AI	GATC	5 cut(s)	220, 367, 502, 761, 777
Sau96I	GGNCC	1 cut(s)	599
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	798
ScrFI	CCNGG	4 cut(s)	132, 549, 603, 794
SduI	GDGCHC	2 cut(s)	153, 513
SfaNI	GCATC	2 cut(s)	57, 340
SfcI	CTRYAG	2 cut(s)	143, 205
SgrAI	CRCCGGYG	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	3 cut(s)	77, 158, 635
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	4 cut(s)	130, 547, 601, 792
StyI	CCWWGG	1 cut(s)	826
TaaI	ACNGT	3 cut(s)	541, 662, 847
TaiI	ACGT	2 cut(s)	180, 865
TaqI	TCGA	1 cut(s)	774
TasI	AATT	3 cut(s)	77, 158, 635
TatI	WGTACW	1 cut(s)	315
TfiI	GAWTC	3 cut(s)	341, 395, 579
Tru1I	TTAA	5 cut(s)	269, 309, 417, 483, 494
Tru9I	TTAA	5 cut(s)	269, 309, 417, 483, 494
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	665, 890, 893
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	3 cut(s)	9, 813, 890
XapI	RAATTY	3 cut(s)	77, 158, 635
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.