Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001176.1

Orthogroup ID

OG0007002

Physical Location & Seq

Genomic Coordinates Reverse (-)

52846 .. 53061

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001176.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

atgcctgggaactatgttggtggaaatactggtatttttgtaagtggaagagatcttcatgaaagggatttggatttgttggccagtcgaggacttcccactgccatagatagatcttacatcattgagatctcaaggagagtccttgatgaggacactggtgaagaacttgatagccttggcatgcttgccccaactgttcagaaggtgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zinc_ribbon_12

Protein Analysis

71

Amino Acids

7.77

Weight (kDa)

4.72

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46380 AT2G46380 AT3G61670 AT3G61670
fragaria_vesca	FvH4_7g16060 FvH4_7g16060 FvH4_7g16060 FvH4_7g16060 FvH4_7g16060
malus_domestica	MD01G1076900.v1.1 MD07G1146100.v1.1 MD07G1146300.v1.1
prunus_persica	Prupe.2G184400_v2.0.a1
pyrus_communis	pycom01g10600 pycom07g14570
rosa_chinensis	RchiOBHm_Chr1g0359001
rosa_laevigata	RLG00000027910
rosa_multiflora	Rmu_sc0001176.1_g000013
rosa_roxburghii	Rroxscaffold_4G00297470
rosa_rugosa	Rorug01G0267000
rosa_samantha	Rh1AG280300 Rh1BG247400 Rh1CG264700 Rh1DG275800
rosa_wichuraiana	Rw1G024920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	4
AoxI	GGCC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	83
BciT130I	CCWGG	1 cut(s)	6
BglII	AGATCT	3 cut(s)	52, 113, 129
Bme1390I	CCNGG	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	5, 178
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	3 cut(s)	34, 84, 163
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	2 cut(s)	5, 178
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseNI	ACTGG	3 cut(s)	34, 84, 163
BshFI	GGCC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	151
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	52, 113, 129
BspANI	GGCC	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	34, 84, 163
BssECI	CCNNGG	2 cut(s)	5, 178
BssMI	GATC	3 cut(s)	52, 113, 129
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	6
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	185, 189
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstKTI	GATC	3 cut(s)	55, 116, 132
BstMBI	GATC	3 cut(s)	52, 113, 129
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	4
BstX2I	RGATCY	3 cut(s)	52, 113, 129
BstYI	RGATCY	3 cut(s)	52, 113, 129
BsuRI	GGCC	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 156
Cac8I	GCNNGC	2 cut(s)	185, 189
CciI	TCATGA	1 cut(s)	58
CviAII	CATG	2 cut(s)	59, 184
CviJI	RGCY	2 cut(s)	83, 177
CviKI_1	RGCY	2 cut(s)	83, 177
DpnI	GATC	3 cut(s)	54, 115, 131
DpnII	GATC	3 cut(s)	52, 113, 129
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	2 cut(s)	62, 187
FaiI	YATR	4 cut(s)	15, 60, 107, 185
FatI	CATG	2 cut(s)	58, 183
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	62, 187
HinfI	GANTC	1 cut(s)	141
HphI	GGTGA	1 cut(s)	173
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	62, 187
Kzo9I	GATC	3 cut(s)	52, 113, 129
LpnPI	CCDG	4 cut(s)	15, 18, 97, 144
MalI	GATC	3 cut(s)	54, 115, 131
MboI	GATC	3 cut(s)	52, 113, 129
MboII	GAAGA	3 cut(s)	47, 60, 176
MflI	RGATCY	3 cut(s)	52, 113, 129
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	83, 145
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	3 cut(s)	52, 113, 129
NlaIII	CATG	2 cut(s)	62, 187
NspI	RCATGY	1 cut(s)	187
PaeI	GCATGC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	58
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PsuI	RGATCY	3 cut(s)	52, 113, 129
Sau3AI	GATC	3 cut(s)	52, 113, 129
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SphI	GCATGC	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	88
TscAI	CASTG	2 cut(s)	106, 163
TspDTI	ATGAA	2 cut(s)	47, 75
TspRI	CASTG	2 cut(s)	106, 163
XagI	CCTNNNNNAGG	1 cut(s)	149
XceI	RCATGY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.