Rh1BG247400

Probable zinc-ribbon domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007002
Physical Location & Seq
Forward (+)
37463434 .. 37470624
7191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG247400.1

Sequence Viewer

Length: 2667 bp
ATGGAAGATAATAGCTCAAAAAAGAAAAGGCAAGATGGGGATACTTCGTCAGAGAAGTCGGATGAAGAAACGGTGGGAGGAGTTTTTGCTAAATTGGCTAGTTCAGATGATAAAGGATTATTAGTTTTAAGTGATGTTTCTGATACAGATGTTAAGTCAAGTGAAGGCTCTTTGGTTTCTGATCAAAGGGTTTTAGAGAAGGAAGATGCTGAGATATGTAGGAAGCCAACCAAAGCTGCGACTGATAACTGGGCTGTAGATAATGGCCTTGATATGAGCATGAAAAAAGATGAACCGGGGAATGCAGCAAGAAATGCAATGGGAAGAGGACATGGAGATTTGAGTTCTGAATCTGGTTCCACGAGCTTAAGCCGAAGATCAGCATGGATGGCAGCTTGGCAAGCTGAGGAGAATAGTGCAAAAGAGGGGTTTCGAAGAAATCCAAGAATTGATGTGGAAGGTATGAGGTCTTCAACTTCCAATTATCCTGAAGAGGGTCCATCAAATTACCAGTTGGGTTCTTCTCACAGGATTGGGGAAGCGTTGAGGAAATCTAATGACCAAGATGGGGCAACAAGAGTTCTGTCCCTTGAACAAGACCGAGCTGAGCTGCTGAGGAAGCTGGATGAGTTGAGGGATCAACTTAGTCGGTCTTGTGATATGGCTGATAAGTCGAAAGAGAAAGCTCCTCTTGATGGGAGAATGGTTCCTCCAGATCCTTATGGTGGTTCTGACACTTCATATCCAGGTGCTTCTTCAGGACCAAGTAGACCTTCTATGCAGTACTTTGGACCTGATAAACATCTTTCAGGACACCCTCATTTTAATCAATATCCTGAGCATTTTCCCTATACCAATGGCCACGAAACTGCTATGCCTAGCTTCACTCCTTCCATGCATAACTCAAACAGTTTTTCGGGTTATGGGGATCCTTATGGACCCCAAATGCTCAGTGGAGCTCCACATCCATTTCCTAGGCAATACCAACAGCCATCTCATCCATACTTTTCTGGACAGTATGCTGAAAATCATCCTGATCCATATGAGCTGCATCCACATAATGCAATGCTTCACCAACATTCTTGCCCTTGTTACTATTGCTATGAAAAACACAGGCGGTCATCAGCACCAGTTCCACCCACTGCTTTTCAAAATAAAAGCTTCCCTGACTTCCCAAGCAATCCCATATTGGCCCATCCTGAAAACCCTGGGTTGATTGGTCCTAATGATCACTACAGACATAGGACTGCAGTTCCCCCGCCCTTTCAAGTTCCACAGCCCCATACAAGATGGCCAAGTGACCTCAACTCCTACATGGGCAGTTTTGCTCATTCCCGTCCTCCAAGGACGGAGCTGGCCAGTGTTGGTCGGCGATGTCGTCCATTTTCTGGTGGTGCTCCGTTTGTCACATGCAACAATTGCTTTGAAATTCTGCAGCTGCCCAAAAAAGTATTGCTTATGGAAAAGAGTCAACAGAAAATACGATGTGGCGCTTGTTCTACTGTAGTTGATTTTGCAGTTTCTAATAGGAAAATTGTTCTTTCTCATCATGCTGAAATGAAACAAAATCATTCAGAAGTCGATAATGGCTTGAACGAGGTGGTTAGAGACAGTTCTTCACATTCTCATGGTCATGTTTCCCGGATCTATGCTCATTTCTCTTCTGAAGATTATGATAATTCTGGTTATGATTTTCAGTCTATAGATAGAGAACCTGCTTTACCATTTCCAGTACCAAGTTCAACAGCAAGCAAGCCTCATCAGATGCAAAGCTTTCATTCTTCGTCTCCCAGTACCTCTGAGGATGACTGCAACCCACCAGAAGTTCCAATTGCTTCAAGAGATGTCACAAATTCTGTTCAGCAGCCTATCAAAGCCACTTTTTCACCACCACCTCCTGGTTCACCTCTGCAGGATCATTTTGATTACTCAGGTAATAATGTGGTAAACCGCCTTGGGAAGGGAAACCGAAGTAGTCGCTCAGATCAAGAGAAGGTGAAGCCAAATAAGATTACATCGAGACAAAATTCCTTAAAAGAGACATCATTGGCTACTGAAATGGAGGTATCATTCAATGAGTACTCTAATACTGGGGTTTCCCAAGATTCGTGGGATGCTAGCAAAGAGGAGGATCCGCCTAAAGTCAACAAAGGGGGTGATTCATTCATTGCAAATTTTATTAAGAAGAGCTTTAGAGATCTTTCCAAGTCGAATCAGACAAACGAGCATGGTAGGAGCAGTGTTTCAATTAATGGGCACCCCATACCAGACCGTGTGGTGAAGAAGGCTGAAAAGATTGCTGGAACAGTCCATCCTGGACAATATTGGTATGATTTCCGAGCAGGATTCTGGGGTATCATGGGTGGGCCTGGTCAGGGCATAATTCCTCCATTTATTGAAGAGTTCAATTACTCAATGCCTGAGAACTGTGCTGGTGGAAATACTGGTATTTTTGTAAATGGAAGAGAGCTTCATGAAAGGGATTTGGATTTGTTGGCCAGTAGAGGACTTCCCACTGCTAGAGATAGATCTTACATCATTGAGATCTCAGGGAGAGTCCTAGATGAGGACACTGGTGAAGAACTTGATAGCCTTGGCAAGCTTGCCCCAACGGTTCAGAAGGTGAAACGAGGATTTGGCATGAAGCCTCCAAAAGTATCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zinc_ribbon_12

Protein Analysis

888

Amino Acids

98.15

Weight (kDa)

6.22

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_12 PF11331 464 - 507 1.2e-21 EDR4 zinc-ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1723
AccB1I GGYRCC 1 cut(s) 2256
AccB7I CCANNNNNTGG 2 cut(s) 1388, 1898
AccI GTMKAC 1 cut(s) 769
AciI CCGC 4 cut(s) 1117, 1259, 1951, 2135
AclWI GGATC 9 cut(s) 645, 710, 923, 936, 1031, 1652, 1923, 2126, 2139
AcoI YGGCCR 4 cut(s) 859, 1292, 1356, 2496
AcsI RAATTY 4 cut(s) 1428, 1852, 2026, 2173
AcuI CTGAAG 3 cut(s) 510, 741, 1686
AfaI GTAC 4 cut(s) 785, 1734, 1795, 2081
AfiI CCNNNNNNNGG 9 cut(s) 494, 568, 695, 725, 1388, 1898, 1960, 2375, 2566
AflII CTTAAG 1 cut(s) 367
AjnI CCWGG 5 cut(s) 745, 1207, 1897, 2314, 2368
AjuI GAANNNNNNNTTGG 2 cut(s) 757, 789
AloI GAACNNNNNNTCC 2 cut(s) 2296, 2328
Alw21I GWGCWC 2 cut(s) 961, 1399
Alw26I GTCTC 4 cut(s) 1602, 1791, 2014, 2033
AlwI GGATC 9 cut(s) 645, 710, 923, 936, 1031, 1652, 1923, 2126, 2139
AoxI GGCC 7 cut(s) 265, 859, 1191, 1292, 1356, 2366, 2496
ApeKI GCWGC 8 cut(s) 236, 305, 392, 610, 1048, 1435, 1438, 1864
ApoI RAATTY 4 cut(s) 1428, 1852, 2026, 2173
AseI ATTAAT 1 cut(s) 2250
AspA2I CCTAGG 1 cut(s) 974
AspLEI GCGC 1 cut(s) 1493
AspS9I GGNCC 7 cut(s) 497, 761, 791, 938, 1192, 1220, 2366
AsuC2I CCSGG 2 cut(s) 297, 1642
AsuHPI GGTGA 8 cut(s) 1064, 1878, 1896, 2008, 2168, 2290, 2588, 2635
AsuII TTCGAA 1 cut(s) 433
AsuNHI GCTAGC 1 cut(s) 2117
AvaII GGWCC 5 cut(s) 497, 761, 791, 938, 1220
AvrII CCTAGG 1 cut(s) 974
BaeGI GKGCMC 1 cut(s) 2259
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BalI TGGCCA 4 cut(s) 861, 1294, 1358, 2498
BamHI GGATCC 2 cut(s) 928, 2131
BanI GGYRCC 1 cut(s) 2256
BanII GRGCYC 1 cut(s) 961
BarI GAAGNNNNNNTAC 2 cut(s) 454, 486
BauI CACGAG 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 2 cut(s) 961, 1399
BbvCI CCTCAGC 2 cut(s) 405, 614
BbvI GCAGC 8 cut(s) 223, 317, 404, 597, 1035, 1425, 1447, 1876
BccI CCATC 9 cut(s) 29, 382, 508, 560, 689, 1000, 1203, 1284, 2319
BciT130I CCWGG 5 cut(s) 747, 1209, 1899, 2316, 2370
BciVI GTATCC 1 cut(s) 34
BclI TGATCA 2 cut(s) 181, 1228
BcnI CCSGG 2 cut(s) 297, 1642
BcoDI GTCTC 4 cut(s) 1602, 1791, 2014, 2033
BfaI CTAG 6 cut(s) 99, 879, 975, 2118, 2520, 2561
BfmI CTRYAG 7 cut(s) 255, 1234, 1248, 1433, 1503, 1701, 1910
BfoI RGCGCY 1 cut(s) 1494
BfrI CTTAAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 1723
BfuI GTATCC 1 cut(s) 34
BglII AGATCT 3 cut(s) 2197, 2528, 2544
BisI GCNGC 8 cut(s) 237, 306, 393, 611, 1049, 1436, 1439, 1865
BlnI CCTAGG 1 cut(s) 974
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 8 cut(s) 238, 307, 394, 612, 1050, 1437, 1440, 1866
BmcAI AGTACT 2 cut(s) 785, 2081
Bme1390I CCNGG 7 cut(s) 297, 747, 1209, 1642, 1899, 2316, 2370
Bme18I GGWCC 5 cut(s) 497, 761, 791, 938, 1220
BmgT120I GGNCC 7 cut(s) 497, 761, 791, 938, 1192, 1220, 2366
BmiI GGNNCC 7 cut(s) 358, 498, 708, 930, 940, 2133, 2258
BmrFI CCNGG 7 cut(s) 297, 747, 1209, 1642, 1899, 2316, 2370
BmrI ACTGGG 3 cut(s) 259, 1785, 2100
BmsI GCATC 4 cut(s) 196, 1060, 1755, 2104
BmtI GCTAGC 1 cut(s) 2121
BmuI ACTGGG 3 cut(s) 259, 1785, 2100
BpiI GAAGAC 1 cut(s) 462
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 3 cut(s) 405, 614, 837
Bpu1102I GCTNAGC 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 433
BpuMI CCSGG 2 cut(s) 297, 1642
BsaBI GATNNNNATC 1 cut(s) 801
BsaJI CCNNGG 7 cut(s) 296, 974, 1207, 1208, 1343, 1954, 2593
BsaXI ACNNNNNCTCC 2 cut(s) 1292, 1322
Bsc4I CCNNNNNNNGG 9 cut(s) 494, 568, 695, 725, 1388, 1898, 1960, 2375, 2566
Bse3DI GCAATG 3 cut(s) 324, 1071, 2166
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 5 cut(s) 747, 1209, 1899, 2316, 2370
BseDI CCNNGG 7 cut(s) 296, 974, 1207, 1208, 1343, 1954, 2593
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 9 cut(s) 494, 568, 695, 725, 1388, 1898, 1960, 2375, 2566
BseMI GCAATG 3 cut(s) 324, 1071, 2166
BseRI GAGGAG 4 cut(s) 93, 422, 678, 2141
BseSI GKGCMC 1 cut(s) 2259
BseXI GCAGC 8 cut(s) 223, 317, 404, 597, 1035, 1425, 1447, 1876
BshFI GGCC 7 cut(s) 267, 861, 1193, 1294, 1358, 2368, 2498
BshNI GGYRCC 1 cut(s) 2256
BsiHKAI GWGCWC 2 cut(s) 961, 1399
BsiSI CCGG 2 cut(s) 296, 1642
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 9 cut(s) 494, 568, 695, 725, 1388, 1898, 1960, 2375, 2566
BsmAI GTCTC 4 cut(s) 1602, 1791, 2014, 2033
BsmBI CGTCTC 1 cut(s) 1791
BsmFI GGGAC 1 cut(s) 571
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 7 cut(s) 267, 861, 1193, 1294, 1358, 2368, 2498
Bsp119I TTCGAA 1 cut(s) 433
Bsp1286I GDGCHC 3 cut(s) 961, 1399, 2259
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 4 cut(s) 1117, 1259, 1951, 2135
BspANI GGCC 7 cut(s) 267, 861, 1193, 1294, 1358, 2368, 2498
BspHI TCATGA 1 cut(s) 2473
BspLI GGNNCC 7 cut(s) 358, 498, 708, 930, 940, 2133, 2258
BspMAI CTGCAG 3 cut(s) 1252, 1437, 1914
BspMI ACCTGC 1 cut(s) 1723
BspOI GCTAGC 1 cut(s) 2121
BspPI GGATC 9 cut(s) 645, 710, 923, 936, 1031, 1652, 1923, 2126, 2139
BspQI GCTCTTC 1 cut(s) 2180
BspT104I TTCGAA 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 2256
BspTI CTTAAG 1 cut(s) 367
BsrDI GCAATG 3 cut(s) 324, 1071, 2166
BssECI CCNNGG 7 cut(s) 296, 974, 1207, 1208, 1343, 1954, 2593
BssSI CACGAG 1 cut(s) 361
BssT1I CCWWGG 4 cut(s) 974, 1343, 1954, 2593
Bst2BI CACGAG 1 cut(s) 361
Bst2UI CCWGG 5 cut(s) 747, 1209, 1899, 2316, 2370
Bst4CI ACNGT 9 cut(s) 73, 911, 1017, 1504, 1613, 2273, 2308, 2429, 2614
Bst6I CTCTTC 6 cut(s) 319, 486, 1666, 2180, 2394, 2458
BstAFI CTTAAG 1 cut(s) 367
BstAPI GCANNNNNTGC 2 cut(s) 314, 1419
BstBI TTCGAA 1 cut(s) 433
BstC8I GCNNGC 7 cut(s) 402, 1356, 1750, 1754, 2119, 2600, 2604
BstENI CCTNNNNNAGG 2 cut(s) 1958, 2564
BstH2I RGCGCY 1 cut(s) 1494
BstHHI GCGC 1 cut(s) 1493
BstMAI GTCTC 4 cut(s) 1602, 1791, 2014, 2033
BstMWI GCNNNNNNNGC 6 cut(s) 95, 314, 389, 401, 619, 1419
BstNI CCWGG 5 cut(s) 747, 1209, 1899, 2316, 2370
BstNSI RCATGY 1 cut(s) 1413
BstSCI CCNGG 7 cut(s) 295, 745, 1207, 1640, 1897, 2314, 2368
BstSFI CTRYAG 7 cut(s) 255, 1234, 1248, 1433, 1503, 1701, 1910
BstSLI GKGCMC 1 cut(s) 2259
BstV1I GCAGC 8 cut(s) 223, 317, 404, 597, 1035, 1425, 1447, 1876
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 7 cut(s) 715, 928, 1644, 2131, 2197, 2528, 2544
BstYI RGATCY 7 cut(s) 715, 928, 1644, 2131, 2197, 2528, 2544
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 7 cut(s) 267, 861, 1193, 1294, 1358, 2368, 2498
BtgZI GCGATG 1 cut(s) 1387
BtsI GCAGTG 3 cut(s) 1140, 2245, 2514
BtsIMutI CAGTG 6 cut(s) 958, 1140, 1366, 2245, 2514, 2571
BveI ACCTGC 1 cut(s) 1723
Cac8I GCNNGC 7 cut(s) 402, 1356, 1750, 1754, 2119, 2600, 2604
CciI TCATGA 1 cut(s) 2473
CfoI GCGC 1 cut(s) 1493
Cfr13I GGNCC 7 cut(s) 497, 761, 791, 938, 1192, 1220, 2366
Csp6I GTAC 4 cut(s) 784, 1733, 1794, 2080
CspCI CAANNNNNGTGG 2 cut(s) 2090, 2125
CviQI GTAC 4 cut(s) 784, 1733, 1794, 2080
EaeI YGGCCR 4 cut(s) 859, 1292, 1356, 2496
Eam1104I CTCTTC 6 cut(s) 319, 486, 1666, 2180, 2394, 2458
EarI CTCTTC 6 cut(s) 319, 486, 1666, 2180, 2394, 2458
EciI GGCGGA 1 cut(s) 2124
Ecl136II GAGCTC 1 cut(s) 959
Eco130I CCWWGG 4 cut(s) 974, 1343, 1954, 2593
Eco24I GRGCYC 1 cut(s) 961
Eco47I GGWCC 5 cut(s) 497, 761, 791, 938, 1220
Eco53kI GAGCTC 1 cut(s) 959
Eco57I CTGAAG 3 cut(s) 510, 741, 1686
EcoICRI GAGCTC 1 cut(s) 959
EcoNI CCTNNNNNAGG 2 cut(s) 1958, 2564
EcoRII CCWGG 5 cut(s) 745, 1207, 1897, 2314, 2368
EcoT14I CCWWGG 4 cut(s) 974, 1343, 1954, 2593
EcoT22I ATGCAT 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 961
ErhI CCWWGG 4 cut(s) 974, 1343, 1954, 2593
Esp3I CGTCTC 1 cut(s) 1791
FalI AAGNNNNNCTT 8 cut(s) 675, 707, 757, 789, 1440, 1472, 2174, 2206
FaqI GGGAC 1 cut(s) 571
FauI CCCGC 1 cut(s) 1266
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 2 cut(s) 181, 1228
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 8 cut(s) 237, 306, 393, 611, 1049, 1436, 1439, 1865
FriOI GRGCYC 1 cut(s) 961
Fsp4HI GCNGC 8 cut(s) 237, 306, 393, 611, 1049, 1436, 1439, 1865
FspBI CTAG 6 cut(s) 99, 879, 975, 2118, 2520, 2561
GlaI GCGC 1 cut(s) 1492
GluI GCNGC 8 cut(s) 237, 306, 393, 611, 1049, 1436, 1439, 1865
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 1494
HaeIII GGCC 7 cut(s) 267, 861, 1193, 1294, 1358, 2368, 2498
HapII CCGG 2 cut(s) 296, 1642
HhaI GCGC 1 cut(s) 1493
Hin6I GCGC 1 cut(s) 1491
HinP1I GCGC 1 cut(s) 1491
HincII GTYRAC 2 cut(s) 1472, 2146
HindII GTYRAC 2 cut(s) 1472, 2146
HindIII AAGCTT 3 cut(s) 1159, 1771, 2600
HinfI GANTC 7 cut(s) 350, 1468, 2105, 2159, 2212, 2346, 2556
HpaII CCGG 2 cut(s) 296, 1642
HphI GGTGA 8 cut(s) 1064, 1878, 1896, 2008, 2168, 2290, 2588, 2635
Hpy166II GTNNAC 5 cut(s) 770, 1472, 1904, 1948, 2146
Hpy8I GTNNAC 5 cut(s) 770, 1472, 1904, 1948, 2146
HpyAV CCTTC 9 cut(s) 158, 193, 452, 783, 900, 1954, 1987, 2278, 2614
HpyCH4III ACNGT 9 cut(s) 73, 911, 1017, 1504, 1613, 2273, 2308, 2429, 2614
HpyF10VI GCNNNNNNNGC 6 cut(s) 95, 314, 389, 401, 619, 1419
HspAI GCGC 1 cut(s) 1491
Ksp22I TGATCA 2 cut(s) 181, 1228
LguI GCTCTTC 1 cut(s) 2180
LmnI GCTCC 6 cut(s) 691, 956, 964, 1351, 1402, 2235
Lsp1109I GCAGC 8 cut(s) 223, 317, 404, 597, 1035, 1425, 1447, 1876
LweI GCATC 4 cut(s) 196, 1060, 1755, 2104
MaeI CTAG 6 cut(s) 99, 879, 975, 2118, 2520, 2561
MaeIII GTNAC 4 cut(s) 1091, 1298, 1405, 1846
MfeI CAATTG 2 cut(s) 1417, 1830
MflI RGATCY 7 cut(s) 715, 928, 1644, 2131, 2197, 2528, 2544
MhlI GDGCHC 3 cut(s) 961, 1399, 2259
MlsI TGGCCA 4 cut(s) 861, 1294, 1358, 2498
MluNI TGGCCA 4 cut(s) 861, 1294, 1358, 2498
MlyI GAGTC 2 cut(s) 1477, 2565
MmeI TCCRAC 1 cut(s) 39
Mox20I TGGCCA 4 cut(s) 861, 1294, 1358, 2498
Mph1103I ATGCAT 1 cut(s) 900
MscI TGGCCA 4 cut(s) 861, 1294, 1358, 2498
MseI TTAA 7 cut(s) 128, 153, 368, 825, 2033, 2181, 2250
MslI CAYNNNNRTG 2 cut(s) 1626, 1632
Msp20I TGGCCA 4 cut(s) 861, 1294, 1358, 2498
MspA1I CMGCKG 1 cut(s) 1438
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 2 cut(s) 296, 1642
MspR9I CCNGG 7 cut(s) 297, 747, 1209, 1642, 1899, 2316, 2370
MunI CAATTG 2 cut(s) 1417, 1830
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 5 cut(s) 747, 1209, 1899, 2316, 2370
MwoI GCNNNNNNNGC 6 cut(s) 95, 314, 389, 401, 619, 1419
NciI CCSGG 2 cut(s) 297, 1642
NdeI CATATG 1 cut(s) 1042
NheI GCTAGC 1 cut(s) 2117
NlaIV GGNNCC 7 cut(s) 358, 498, 708, 930, 940, 2133, 2258
NmuCI GTSAC 3 cut(s) 1298, 1405, 1846
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 1413
NspV TTCGAA 1 cut(s) 433
PagI TCATGA 1 cut(s) 2473
PasI CCCWGGG 1 cut(s) 1208
PciSI GCTCTTC 1 cut(s) 2180
PcsI WCGNNNNNNNCGW 1 cut(s) 1375
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 5 cut(s) 350, 2105, 2159, 2212, 2346
PflMI CCANNNNNTGG 2 cut(s) 1388, 1898
PfoI TCCNGGA 2 cut(s) 1640, 2314
PkrI GCNGC 8 cut(s) 238, 307, 394, 612, 1050, 1437, 1440, 1866
PleI GAGTC 2 cut(s) 1476, 2564
PpsI GAGTC 2 cut(s) 1476, 2564
PshBI ATTAAT 1 cut(s) 2250
Psp124BI GAGCTC 1 cut(s) 961
Psp6I CCWGG 5 cut(s) 745, 1207, 1897, 2314, 2368
PspGI CCWGG 5 cut(s) 745, 1207, 1897, 2314, 2368
PspN4I GGNNCC 7 cut(s) 358, 498, 708, 930, 940, 2133, 2258
PspPI GGNCC 7 cut(s) 497, 761, 791, 938, 1192, 1220, 2366
PsrI GAACNNNNNNTAC 2 cut(s) 1704, 1736
PstI CTGCAG 3 cut(s) 1252, 1437, 1914
PsuI RGATCY 7 cut(s) 715, 928, 1644, 2131, 2197, 2528, 2544
PvuII CAGCTG 1 cut(s) 1438
RsaI GTAC 4 cut(s) 785, 1734, 1795, 2081
RsaNI GTAC 4 cut(s) 784, 1733, 1794, 2080
RseI CAYNNNNRTG 2 cut(s) 1626, 1632
SacI GAGCTC 1 cut(s) 961
SapI GCTCTTC 1 cut(s) 2180
SaqAI TTAA 7 cut(s) 128, 153, 368, 825, 2033, 2181, 2250
SatI GCNGC 8 cut(s) 237, 306, 393, 611, 1049, 1436, 1439, 1865
Sau96I GGNCC 7 cut(s) 497, 761, 791, 938, 1192, 1220, 2366
ScaI AGTACT 2 cut(s) 785, 2081
SchI GAGTC 2 cut(s) 1477, 2565
ScrFI CCNGG 7 cut(s) 297, 747, 1209, 1642, 1899, 2316, 2370
SduI GDGCHC 3 cut(s) 961, 1399, 2259
SfaNI GCATC 4 cut(s) 196, 1060, 1755, 2104
SfcI CTRYAG 7 cut(s) 255, 1234, 1248, 1433, 1503, 1701, 1910
SfuI TTCGAA 1 cut(s) 433
SinI GGWCC 5 cut(s) 497, 761, 791, 938, 1220
SmiMI CAYNNNNRTG 2 cut(s) 1626, 1632
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
SsiI CCGC 4 cut(s) 1117, 1259, 1951, 2135
SspI AATATT 1 cut(s) 2324
SspMI CTAG 6 cut(s) 99, 879, 975, 2118, 2520, 2561
SstI GAGCTC 1 cut(s) 961
StyD4I CCNGG 7 cut(s) 295, 745, 1207, 1640, 1897, 2314, 2368
StyI CCWWGG 4 cut(s) 974, 1343, 1954, 2593
TaaI ACNGT 9 cut(s) 73, 911, 1017, 1504, 1613, 2273, 2308, 2429, 2614
TaqI TCGA 5 cut(s) 433, 674, 1581, 2018, 2210
TaqII GACCGA 2 cut(s) 615, 639
TatI WGTACW 2 cut(s) 783, 2079
TfiI GAWTC 5 cut(s) 350, 2105, 2159, 2212, 2346
Tru1I TTAA 7 cut(s) 128, 153, 368, 825, 2033, 2181, 2250
Tru9I TTAA 7 cut(s) 128, 153, 368, 825, 2033, 2181, 2250
TscAI CASTG 6 cut(s) 958, 1147, 1366, 2245, 2521, 2578
TseFI GTSAC 3 cut(s) 1298, 1405, 1846
TseI GCWGC 8 cut(s) 236, 305, 392, 610, 1048, 1435, 1438, 1864
Tsp45I GTSAC 3 cut(s) 1298, 1405, 1846
TspGWI ACGGA 2 cut(s) 1364, 1389
TspRI CASTG 6 cut(s) 958, 1147, 1366, 2245, 2521, 2578
Van91I CCANNNNNTGG 2 cut(s) 1388, 1898
Vha464I CTTAAG 1 cut(s) 367
VpaK11BI GGWCC 5 cut(s) 497, 761, 791, 938, 1220
VspI ATTAAT 1 cut(s) 2250
XagI CCTNNNNNAGG 2 cut(s) 1958, 2564
XapI RAATTY 4 cut(s) 1428, 1852, 2026, 2173
XceI RCATGY 1 cut(s) 1413
XcmI CCANNNNNNNNNTGG 1 cut(s) 950
XmaJI CCTAGG 1 cut(s) 974
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 6 cut(s) 99, 879, 975, 2118, 2520, 2561
ZrmI AGTACT 2 cut(s) 785, 2081
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.