No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g24140 FvH4_7g24140 FvH4_7g24140 FvH4_7g24140 |
| malus_domestica | MD01G1148600.v1.1 MD07G1215600.v1.1 |
| prunus_persica | Prupe.2G247500_v2.0.a1 |
| pyrus_communis | pycom07g19790 |
| rosa_chinensis | RchiOBHm_Chr1g0369571 |
| rosa_laevigata | RLG00000027118 |
| rosa_multiflora | Rmu_sc0001154.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00287520 |
| rosa_rugosa | Rorug01G0351200 Rorug01G0351300 Rorug01G0351400 |
| rosa_samantha | Rh1AG359500 Rh1BG323200 Rh1CG336500 Rh1DG354000 |
| rosa_wichuraiana | Rw1G031680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 793 |
| Acc36I | ACCTGC | 1 cut(s) | 793 |
| Acc65I | GGTACC | 1 cut(s) | 1506 |
| AccB1I | GGYRCC | 3 cut(s) | 58, 1506, 1583 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1369 |
| AccII | CGCG | 2 cut(s) | 1377, 1410 |
| AccIII | TCCGGA | 1 cut(s) | 478 |
| AciI | CCGC | 4 cut(s) | 156, 411, 485, 589 |
| AclI | AACGTT | 1 cut(s) | 324 |
| AclWI | GGATC | 2 cut(s) | 1313, 1326 |
| AcoI | YGGCCR | 1 cut(s) | 494 |
| AcsI | RAATTY | 5 cut(s) | 175, 193, 629, 856, 1226 |
| AcuI | CTGAAG | 3 cut(s) | 32, 750, 1387 |
| AcyI | GRCGYC | 2 cut(s) | 347, 1584 |
| AfaI | GTAC | 7 cut(s) | 254, 383, 725, 1298, 1454, 1508, 1612 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 189, 277, 652, 1369, 1449 |
| AflIII | ACRYGT | 1 cut(s) | 777 |
| AgsI | TTSAA | 6 cut(s) | 298, 360, 432, 439, 1108, 1173 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 55, 87 |
| AluBI | AGCT | 8 cut(s) | 33, 42, 146, 435, 442, 688, 1169, 1313 |
| AluI | AGCT | 8 cut(s) | 33, 42, 146, 435, 442, 688, 1169, 1313 |
| Alw21I | GWGCWC | 6 cut(s) | 44, 148, 690, 1046, 1275, 1580 |
| Alw26I | GTCTC | 3 cut(s) | 914, 926, 932 |
| AlwI | GGATC | 2 cut(s) | 1313, 1326 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1436 |
| Ama87I | CYCGRG | 1 cut(s) | 548 |
| Aor13HI | TCCGGA | 1 cut(s) | 478 |
| AoxI | GGCC | 6 cut(s) | 391, 494, 519, 537, 1389, 1440 |
| ApeKI | GCWGC | 3 cut(s) | 408, 586, 592 |
| ApoI | RAATTY | 5 cut(s) | 175, 193, 629, 856, 1226 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 74, 106 |
| Asp718I | GGTACC | 1 cut(s) | 1506 |
| AspLEI | GCGC | 6 cut(s) | 289, 1333, 1410, 1412, 1496, 1586 |
| AspS9I | GGNCC | 4 cut(s) | 519, 608, 816, 1389 |
| AsuC2I | CCSGG | 1 cut(s) | 184 |
| AsuHPI | GGTGA | 2 cut(s) | 1150, 1227 |
| AsuII | TTCGAA | 3 cut(s) | 80, 197, 215 |
| AvaI | CYCGRG | 1 cut(s) | 548 |
| AvaII | GGWCC | 2 cut(s) | 608, 816 |
| BamHI | GGATCC | 1 cut(s) | 1318 |
| BanI | GGYRCC | 3 cut(s) | 58, 1506, 1583 |
| BanII | GRGCYC | 4 cut(s) | 44, 148, 690, 1533 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1445, 1477 |
| BbsI | GAAGAC | 1 cut(s) | 1013 |
| Bbv12I | GWGCWC | 6 cut(s) | 44, 148, 690, 1046, 1275, 1580 |
| BbvCI | CCTCAGC | 1 cut(s) | 1437 |
| BbvI | GCAGC | 3 cut(s) | 420, 598, 604 |
| BccI | CCATC | 2 cut(s) | 823, 1297 |
| BceAI | ACGGC | 1 cut(s) | 1140 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 871, 905 |
| BclI | TGATCA | 1 cut(s) | 1207 |
| BcnI | CCSGG | 1 cut(s) | 184 |
| BcoDI | GTCTC | 3 cut(s) | 914, 926, 932 |
| BfaI | CTAG | 2 cut(s) | 149, 993 |
| BfmI | CTRYAG | 1 cut(s) | 737 |
| BfoI | RGCGCY | 1 cut(s) | 1587 |
| BfuAI | ACCTGC | 1 cut(s) | 793 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 493 |
| BglII | AGATCT | 1 cut(s) | 733 |
| BisI | GCNGC | 6 cut(s) | 409, 412, 485, 587, 590, 593 |
| BlsI | GCNGC | 6 cut(s) | 410, 413, 486, 588, 591, 594 |
| Bme1390I | CCNGG | 1 cut(s) | 184 |
| Bme18I | GGWCC | 2 cut(s) | 608, 816 |
| BmeT110I | CYCGRG | 1 cut(s) | 548 |
| BmgT120I | GGNCC | 4 cut(s) | 519, 608, 816, 1389 |
| BmrFI | CCNGG | 1 cut(s) | 184 |
| BmrI | ACTGGG | 1 cut(s) | 120 |
| BmuI | ACTGGG | 1 cut(s) | 120 |
| BpiI | GAAGAC | 1 cut(s) | 1013 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1314, 1437 |
| Bpu14I | TTCGAA | 3 cut(s) | 80, 197, 215 |
| BpuEI | CTTGAG | 2 cut(s) | 724, 1465 |
| BpuMI | CCSGG | 1 cut(s) | 184 |
| BsaHI | GRCGYC | 2 cut(s) | 347, 1584 |
| BsaJI | CCNNGG | 5 cut(s) | 306, 525, 666, 753, 1392 |
| BsaWI | WCCGGW | 2 cut(s) | 478, 1258 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1127, 1157, 1344, 1374 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 189, 277, 652, 1369, 1449 |
| Bse118I | RCCGGY | 3 cut(s) | 334, 1449, 1580 |
| Bse1I | ACTGG | 3 cut(s) | 126, 497, 557 |
| Bse3DI | GCAATG | 3 cut(s) | 145, 889, 1524 |
| BseAI | TCCGGA | 1 cut(s) | 478 |
| BseDI | CCNNGG | 5 cut(s) | 306, 525, 666, 753, 1392 |
| BseGI | GGATG | 3 cut(s) | 475, 1201, 1613 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 189, 277, 652, 1369, 1449 |
| BseMI | GCAATG | 3 cut(s) | 145, 889, 1524 |
| BseMII | CTCAG | 4 cut(s) | 927, 1328, 1428, 1621 |
| BseNI | ACTGG | 3 cut(s) | 126, 497, 557 |
| BsePI | GCGCGC | 1 cut(s) | 1408 |
| BseRI | GAGGAG | 6 cut(s) | 617, 1130, 1145, 1148, 1409, 1541 |
| BseXI | GCAGC | 3 cut(s) | 420, 598, 604 |
| BseYI | CCCAGC | 1 cut(s) | 466 |
| BsgI | GTGCAG | 2 cut(s) | 779, 1241 |
| Bsh1236I | CGCG | 2 cut(s) | 1377, 1410 |
| BshFI | GGCC | 6 cut(s) | 393, 496, 521, 539, 1391, 1442 |
| BshNI | GGYRCC | 3 cut(s) | 58, 1506, 1583 |
| BsiHKAI | GWGCWC | 6 cut(s) | 44, 148, 690, 1046, 1275, 1580 |
| BsiHKCI | CYCGRG | 1 cut(s) | 548 |
| BsiSI | CCGG | 9 cut(s) | 183, 335, 479, 488, 497, 568, 1259, 1450, 1581 |
| BsiWI | CGTACG | 1 cut(s) | 252 |
| BslFI | GGGAC | 4 cut(s) | 2, 547, 594, 802 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 189, 277, 652, 1369, 1449 |
| BsmAI | GTCTC | 3 cut(s) | 914, 926, 932 |
| BsmFI | GGGAC | 4 cut(s) | 2, 547, 594, 802 |
| BsmI | GAATGC | 2 cut(s) | 656, 1182 |
| BsnI | GGCC | 6 cut(s) | 393, 496, 521, 539, 1391, 1442 |
| BsoBI | CYCGRG | 1 cut(s) | 548 |
| Bsp119I | TTCGAA | 3 cut(s) | 80, 197, 215 |
| Bsp1286I | GDGCHC | 7 cut(s) | 44, 148, 690, 1046, 1275, 1533, 1580 |
| Bsp13I | TCCGGA | 1 cut(s) | 478 |
| Bsp143I | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| Bsp19I | CCATGG | 2 cut(s) | 525, 666 |
| Bsp68I | TCGCGA | 1 cut(s) | 1377 |
| BspACI | CCGC | 4 cut(s) | 156, 411, 485, 589 |
| BspANI | GGCC | 6 cut(s) | 393, 496, 521, 539, 1391, 1442 |
| BspCNI | CTCAG | 4 cut(s) | 928, 1327, 1429, 1620 |
| BspEI | TCCGGA | 1 cut(s) | 478 |
| BspFNI | CGCG | 2 cut(s) | 1377, 1410 |
| BspHI | TCATGA | 1 cut(s) | 1267 |
| BspMAI | CTGCAG | 1 cut(s) | 741 |
| BspMI | ACCTGC | 1 cut(s) | 793 |
| BspPI | GGATC | 2 cut(s) | 1313, 1326 |
| BspT104I | TTCGAA | 3 cut(s) | 80, 197, 215 |
| BspT107I | GGYRCC | 3 cut(s) | 58, 1506, 1583 |
| BsrDI | GCAATG | 3 cut(s) | 145, 889, 1524 |
| BsrFI | RCCGGY | 3 cut(s) | 334, 1449, 1580 |
| BsrI | ACTGG | 3 cut(s) | 126, 497, 557 |
| BssAI | RCCGGY | 3 cut(s) | 334, 1449, 1580 |
| BssECI | CCNNGG | 5 cut(s) | 306, 525, 666, 753, 1392 |
| BssHII | GCGCGC | 1 cut(s) | 1408 |
| BssMI | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| BssNI | GRCGYC | 2 cut(s) | 347, 1584 |
| BssT1I | CCWWGG | 3 cut(s) | 525, 666, 753 |
| Bst4CI | ACNGT | 2 cut(s) | 1219, 1246 |
| Bst6I | CTCTTC | 2 cut(s) | 667, 1494 |
| BstACI | GRCGYC | 2 cut(s) | 347, 1584 |
| BstBI | TTCGAA | 3 cut(s) | 80, 197, 215 |
| BstC8I | GCNNGC | 8 cut(s) | 35, 44, 852, 1042, 1065, 1375, 1410, 1515 |
| BstDEI | CTNAG | 5 cut(s) | 27, 936, 1314, 1437, 1607 |
| BstDSI | CCRYGG | 2 cut(s) | 525, 666 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 650 |
| BstF5I | GGATG | 3 cut(s) | 475, 1201, 1613 |
| BstFNI | CGCG | 2 cut(s) | 1377, 1410 |
| BstH2I | RGCGCY | 1 cut(s) | 1587 |
| BstHHI | GCGC | 6 cut(s) | 289, 1333, 1410, 1412, 1496, 1586 |
| BstKTI | GATC | 6 cut(s) | 736, 846, 1210, 1291, 1321, 1381 |
| BstMAI | GTCTC | 3 cut(s) | 914, 926, 932 |
| BstMBI | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| BstNSI | RCATGY | 2 cut(s) | 781, 1067 |
| BstSCI | CCNGG | 1 cut(s) | 182 |
| BstSFI | CTRYAG | 1 cut(s) | 737 |
| BstUI | CGCG | 2 cut(s) | 1377, 1410 |
| BstV1I | GCAGC | 3 cut(s) | 420, 598, 604 |
| BstV2I | GAAGAC | 1 cut(s) | 1013 |
| BstX2I | RGATCY | 2 cut(s) | 733, 1318 |
| BstYI | RGATCY | 2 cut(s) | 733, 1318 |
| BsuRI | GGCC | 6 cut(s) | 393, 496, 521, 539, 1391, 1442 |
| BtgI | CCRYGG | 2 cut(s) | 525, 666 |
| BtsCI | GGATG | 3 cut(s) | 475, 1201, 1613 |
| BtsI | GCAGTG | 1 cut(s) | 1419 |
| BtsIMutI | CAGTG | 3 cut(s) | 133, 564, 1419 |
| BtuMI | TCGCGA | 1 cut(s) | 1377 |
| BveI | ACCTGC | 1 cut(s) | 793 |
| Cac8I | GCNNGC | 8 cut(s) | 35, 44, 852, 1042, 1065, 1375, 1410, 1515 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1436 |
| CciI | TCATGA | 1 cut(s) | 1267 |
| CfoI | GCGC | 6 cut(s) | 289, 1333, 1410, 1412, 1496, 1586 |
| Cfr10I | RCCGGY | 3 cut(s) | 334, 1449, 1580 |
| Cfr13I | GGNCC | 4 cut(s) | 519, 608, 816, 1389 |
| CseI | GACGC | 2 cut(s) | 336, 1442 |
| Csp6I | GTAC | 7 cut(s) | 253, 382, 724, 1297, 1453, 1507, 1611 |
| CviAII | CATG | 7 cut(s) | 526, 667, 778, 1064, 1159, 1268, 1364 |
| CviQI | GTAC | 7 cut(s) | 253, 382, 724, 1297, 1453, 1507, 1611 |
| DdeI | CTNAG | 5 cut(s) | 27, 936, 1314, 1437, 1607 |
| DinI | GGCGCC | 1 cut(s) | 1585 |
| DpnI | GATC | 6 cut(s) | 735, 845, 1209, 1290, 1320, 1380 |
| DpnII | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| EaeI | YGGCCR | 1 cut(s) | 494 |
| Eam1104I | CTCTTC | 2 cut(s) | 667, 1494 |
| EarI | CTCTTC | 2 cut(s) | 667, 1494 |
| Ecl136II | GAGCTC | 3 cut(s) | 42, 146, 688 |
| Eco130I | CCWWGG | 3 cut(s) | 525, 666, 753 |
| Eco147I | AGGCCT | 1 cut(s) | 1442 |
| Eco24I | GRGCYC | 4 cut(s) | 44, 148, 690, 1533 |
| Eco32I | GATATC | 1 cut(s) | 1078 |
| Eco47I | GGWCC | 2 cut(s) | 608, 816 |
| Eco53kI | GAGCTC | 3 cut(s) | 42, 146, 688 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 750, 1387 |
| Eco88I | CYCGRG | 1 cut(s) | 548 |
| EcoICRI | GAGCTC | 3 cut(s) | 42, 146, 688 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 650 |
| EcoO109I | RGGNCCY | 2 cut(s) | 608, 816 |
| EcoRI | GAATTC | 2 cut(s) | 175, 193 |
| EcoRV | GATATC | 1 cut(s) | 1078 |
| EcoT14I | CCWWGG | 3 cut(s) | 525, 666, 753 |
| EcoT22I | ATGCAT | 1 cut(s) | 451 |
| EcoT38I | GRGCYC | 4 cut(s) | 44, 148, 690, 1533 |
| EgeI | GGCGCC | 1 cut(s) | 1585 |
| EheI | GGCGCC | 1 cut(s) | 1585 |
| ErhI | CCWWGG | 3 cut(s) | 525, 666, 753 |
| FaeI | CATG | 7 cut(s) | 529, 670, 781, 1067, 1162, 1271, 1367 |
| FaqI | GGGAC | 4 cut(s) | 2, 547, 594, 802 |
| FatI | CATG | 7 cut(s) | 525, 666, 777, 1063, 1158, 1267, 1363 |
| FauI | CCCGC | 1 cut(s) | 149 |
| FbaI | TGATCA | 1 cut(s) | 1207 |
| Fnu4HI | GCNGC | 6 cut(s) | 409, 412, 485, 587, 590, 593 |
| FokI | GGATG | 3 cut(s) | 462, 1208, 1600 |
| FriOI | GRGCYC | 4 cut(s) | 44, 148, 690, 1533 |
| Fsp4HI | GCNGC | 6 cut(s) | 409, 412, 485, 587, 590, 593 |
| FspBI | CTAG | 2 cut(s) | 149, 993 |
| GlaI | GCGC | 6 cut(s) | 288, 1332, 1409, 1411, 1495, 1585 |
| GluI | GCNGC | 6 cut(s) | 409, 412, 485, 587, 590, 593 |
| GsaI | CCCAGC | 1 cut(s) | 470 |
| HaeII | RGCGCY | 1 cut(s) | 1587 |
| HaeIII | GGCC | 6 cut(s) | 393, 496, 521, 539, 1391, 1442 |
| HapII | CCGG | 9 cut(s) | 183, 335, 479, 488, 497, 568, 1259, 1450, 1581 |
| HgaI | GACGC | 2 cut(s) | 336, 1442 |
| HhaI | GCGC | 6 cut(s) | 289, 1333, 1410, 1412, 1496, 1586 |
| Hin1I | GRCGYC | 2 cut(s) | 347, 1584 |
| Hin1II | CATG | 7 cut(s) | 529, 670, 781, 1067, 1162, 1271, 1367 |
| Hin6I | GCGC | 6 cut(s) | 287, 1331, 1408, 1410, 1494, 1584 |
| HinP1I | GCGC | 6 cut(s) | 287, 1331, 1408, 1410, 1494, 1584 |
| HincII | GTYRAC | 1 cut(s) | 206 |
| HindII | GTYRAC | 1 cut(s) | 206 |
| HindIII | AAGCTT | 2 cut(s) | 433, 1167 |
| HinfI | GANTC | 3 cut(s) | 12, 472, 986 |
| HpaII | CCGG | 9 cut(s) | 183, 335, 479, 488, 497, 568, 1259, 1450, 1581 |
| HphI | GGTGA | 2 cut(s) | 1150, 1227 |
| Hpy166II | GTNNAC | 2 cut(s) | 206, 1122 |
| Hpy188I | TCNGA | 6 cut(s) | 51, 307, 372, 730, 979, 1186 |
| Hpy8I | GTNNAC | 2 cut(s) | 206, 1122 |
| Hpy99I | CGWCG | 2 cut(s) | 352, 382 |
| HpyAV | CCTTC | 2 cut(s) | 120, 383 |
| HpyCH4III | ACNGT | 2 cut(s) | 1219, 1246 |
| HpyCH4IV | ACGT | 3 cut(s) | 202, 324, 380 |
| HpyF3I | CTNAG | 5 cut(s) | 27, 936, 1314, 1437, 1607 |
| HpySE526I | ACGT | 3 cut(s) | 202, 324, 380 |
| Hsp92I | GRCGYC | 2 cut(s) | 347, 1584 |
| Hsp92II | CATG | 7 cut(s) | 529, 670, 781, 1067, 1162, 1271, 1367 |
| HspAI | GCGC | 6 cut(s) | 287, 1331, 1408, 1410, 1494, 1584 |
| KasI | GGCGCC | 1 cut(s) | 1583 |
| KflI | GGGWCCC | 2 cut(s) | 608, 816 |
| Kpn2I | TCCGGA | 1 cut(s) | 478 |
| KpnI | GGTACC | 1 cut(s) | 1510 |
| Ksp22I | TGATCA | 1 cut(s) | 1207 |
| Kzo9I | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| LmnI | GCTCC | 6 cut(s) | 143, 481, 647, 693, 1528, 1575 |
| Lsp1109I | GCAGC | 3 cut(s) | 420, 598, 604 |
| MaeI | CTAG | 2 cut(s) | 149, 993 |
| MaeII | ACGT | 3 cut(s) | 202, 324, 380 |
| MaeIII | GTNAC | 3 cut(s) | 115, 1031, 1233 |
| MalI | GATC | 6 cut(s) | 735, 845, 1209, 1290, 1320, 1380 |
| MboI | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| MflI | RGATCY | 2 cut(s) | 733, 1318 |
| MhlI | GDGCHC | 7 cut(s) | 44, 148, 690, 1046, 1275, 1533, 1580 |
| Mly113I | GGCGCC | 1 cut(s) | 1584 |
| Mph1103I | ATGCAT | 1 cut(s) | 451 |
| MroI | TCCGGA | 1 cut(s) | 478 |
| MspA1I | CMGCKG | 2 cut(s) | 411, 589 |
| MspI | CCGG | 9 cut(s) | 183, 335, 479, 488, 497, 568, 1259, 1450, 1581 |
| MspR9I | CCNGG | 1 cut(s) | 184 |
| Mva1269I | GAATGC | 2 cut(s) | 656, 1182 |
| MvnI | CGCG | 2 cut(s) | 1377, 1410 |
| NarI | GGCGCC | 1 cut(s) | 1584 |
| NciI | CCSGG | 1 cut(s) | 184 |
| NcoI | CCATGG | 2 cut(s) | 525, 666 |
| NdeII | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| NlaIII | CATG | 7 cut(s) | 529, 670, 781, 1067, 1162, 1271, 1367 |
| NmeAIII | GCCGAG | 1 cut(s) | 1417 |
| NmuCI | GTSAC | 3 cut(s) | 115, 1031, 1233 |
| NruI | TCGCGA | 1 cut(s) | 1377 |
| NsiI | ATGCAT | 1 cut(s) | 451 |
| NspI | RCATGY | 2 cut(s) | 781, 1067 |
| NspV | TTCGAA | 3 cut(s) | 80, 197, 215 |
| PaeI | GCATGC | 1 cut(s) | 1067 |
| PaeR7I | CTCGAG | 1 cut(s) | 548 |
| PagI | TCATGA | 1 cut(s) | 1267 |
| PaqCI | CACCTGC | 1 cut(s) | 793 |
| PauI | GCGCGC | 1 cut(s) | 1408 |
| PceI | AGGCCT | 1 cut(s) | 1442 |
| PciI | ACATGT | 1 cut(s) | 777 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 194, 818, 1374, 1389 |
| PctI | GAATGC | 2 cut(s) | 656, 1182 |
| PfeI | GAWTC | 3 cut(s) | 12, 472, 986 |
| Pfl23II | CGTACG | 1 cut(s) | 252 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1369 |
| PkrI | GCNGC | 6 cut(s) | 410, 413, 486, 588, 591, 594 |
| PluTI | GGCGCC | 1 cut(s) | 1587 |
| PpuMI | RGGWCCY | 2 cut(s) | 608, 816 |
| PscI | ACATGT | 1 cut(s) | 777 |
| Psp124BI | GAGCTC | 3 cut(s) | 44, 148, 690 |
| Psp1406I | AACGTT | 1 cut(s) | 324 |
| Psp5II | RGGWCCY | 2 cut(s) | 608, 816 |
| PspFI | CCCAGC | 1 cut(s) | 466 |
| PspLI | CGTACG | 1 cut(s) | 252 |
| PspPI | GGNCC | 4 cut(s) | 519, 608, 816, 1389 |
| PspPPI | RGGWCCY | 2 cut(s) | 608, 816 |
| PspXI | VCTCGAGB | 1 cut(s) | 548 |
| PstI | CTGCAG | 1 cut(s) | 741 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1436 |
| PsuI | RGATCY | 2 cut(s) | 733, 1318 |
| PteI | GCGCGC | 1 cut(s) | 1408 |
| RruI | TCGCGA | 1 cut(s) | 1377 |
| RsaI | GTAC | 7 cut(s) | 254, 383, 725, 1298, 1454, 1508, 1612 |
| RsaNI | GTAC | 7 cut(s) | 253, 382, 724, 1297, 1453, 1507, 1611 |
| SacI | GAGCTC | 3 cut(s) | 44, 148, 690 |
| SatI | GCNGC | 6 cut(s) | 409, 412, 485, 587, 590, 593 |
| Sau3AI | GATC | 6 cut(s) | 733, 843, 1207, 1288, 1318, 1378 |
| Sau96I | GGNCC | 4 cut(s) | 519, 608, 816, 1389 |
| ScrFI | CCNGG | 1 cut(s) | 184 |
| SduI | GDGCHC | 7 cut(s) | 44, 148, 690, 1046, 1275, 1533, 1580 |
| SfcI | CTRYAG | 1 cut(s) | 737 |
| SfoI | GGCGCC | 1 cut(s) | 1585 |
| Sfr274I | CTCGAG | 1 cut(s) | 548 |
| SfuI | TTCGAA | 3 cut(s) | 80, 197, 215 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1580 |
| SinI | GGWCC | 2 cut(s) | 608, 816 |
| SlaI | CTCGAG | 1 cut(s) | 548 |
| SmlI | CTYRAG | 3 cut(s) | 548, 703, 1444 |
| SmoI | CTYRAG | 3 cut(s) | 548, 703, 1444 |
| SphI | GCATGC | 1 cut(s) | 1067 |
| SseBI | AGGCCT | 1 cut(s) | 1442 |
| SsiI | CCGC | 4 cut(s) | 156, 411, 485, 589 |
| SspDI | GGCGCC | 1 cut(s) | 1583 |
| SspMI | CTAG | 2 cut(s) | 149, 993 |
| SstI | GAGCTC | 3 cut(s) | 44, 148, 690 |
| StuI | AGGCCT | 1 cut(s) | 1442 |
| StyD4I | CCNGG | 1 cut(s) | 182 |
| StyI | CCWWGG | 3 cut(s) | 525, 666, 753 |
| TaaI | ACNGT | 2 cut(s) | 1219, 1246 |
| TaiI | ACGT | 3 cut(s) | 205, 327, 383 |
| TaqII | GACCGA | 1 cut(s) | 944 |
| TatI | WGTACW | 2 cut(s) | 723, 1610 |
| TauI | GCSGC | 3 cut(s) | 414, 487, 592 |
| TfiI | GAWTC | 3 cut(s) | 12, 472, 986 |
| TscAI | CASTG | 3 cut(s) | 133, 564, 1419 |
| TseFI | GTSAC | 3 cut(s) | 115, 1031, 1233 |
| TseI | GCWGC | 3 cut(s) | 408, 586, 592 |
| Tsp45I | GTSAC | 3 cut(s) | 115, 1031, 1233 |
| TspDTI | ATGAA | 5 cut(s) | 464, 664, 788, 890, 1044 |
| TspGWI | ACGGA | 1 cut(s) | 671 |
| TspRI | CASTG | 3 cut(s) | 133, 564, 1419 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1369 |
| VpaK11BI | GGWCC | 2 cut(s) | 608, 816 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 650 |
| XapI | RAATTY | 5 cut(s) | 175, 193, 629, 856, 1226 |
| XceI | RCATGY | 2 cut(s) | 781, 1067 |
| XhoI | CTCGAG | 1 cut(s) | 548 |
| XspI | CTAG | 2 cut(s) | 149, 993 |
| Zsp2I | ATGCAT | 1 cut(s) | 451 |