Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011594

Physical Location & Seq

Genomic Coordinates Reverse (-)

59426401 .. 59429684

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG359500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGGATCCGGGATTGTTGCTTCTGGGAGTTGGCAAAGCATACAGATTCCAGTTTCTCGTTCAGTTTATTGTGCTTCTTCTAGTTCAAAGCCATCGTTTTCGATTTCTTTTTCTTCCTTGGCAAAGCCTAGTGGAAGCAATGGAGGTTTGGGGCATGGGTTAGTTCATAGTTTGGTGTTTTCAGGGTCGAATAAGTTAAAAGGTTGTAGCTTGAAGCAAACTTGTAGAGCTAGTTTTGAGGATTTCTCCTATGATGAAATGTCGGACCAGATGGAGGAATTGGCTCAGAAGTTGGAAATTGGTAGTGATAACGACGAAAATGAAGAGGAGGATACATCTTGGGTTATGTCAAAAGTTTCGAGGTCTAGGTACCCGGAAGGGGAAAAGAGGAGAGGCAATGGTTTTTCAATGCAATTTTCGAGGTTCAAGCTTAATGCTTTAGAGCCATCTTTGCTTGGGATTAATCCTGAGCCACCAGACTGGCCAGAGAGGAGTGAAATTGTTCTAGCAGACATTGCACGAAAGGCAAACAGCCTCGAGTTTCCAATGTCCCTTAGGTTGTTGAAGAAGAAGCATCAACAATGGGAAGAGAGTTCCAGAGAAGTAGGGGAGTACACTGCTTTTAGCTCTTTGAACAAGGCCTTCTCGTCCATGGTGTTTATCATCCATGAGCTTCACAGCTATGCTTTAAGTATAGGGGGATGTCTGTACTGTGAAGACTTTAAGGAAATTATATCCAAGGTGCAGAGAGAAATGAACTTTTCATTTGTGTGGTTGTTTCAGCAGGTCTTTTCAAGGTCACCGACTCTCATGGTGTATGTGATGATCTTGTTGGCGAATTTCACGGTTTATTCAATGAATGGTAAGAATGCTGTTATTCCAGATACCACTCCTATGCCTGATGTGGCTGAGACTTTGGGTCTGTTTCTGTATGAACCGCTGGAACGACCCTGCGTGTATTGGGATGGGGAGGATGAATGTGAGCCGCGCAAAGTGAGCCCCAGTGAAAGTGAGAACAAGGATGGGGCTGGCCTTAGGTTGATCAAGTTTCCAACTGAAGAGATATTTGGTGTTTCGTCATTGAATAATGAGGAGTTGAATGTGTGGAAATCAGTGCTGGAAGAAGCTTCAAATATGCAGGCAGAATTGAGGACCGAGGATCTTGATTATGAAACTGTGCAACAATTTGTGTCACCTGTAACTGTGAATCTCGAAGCAGATGATTATGAGTGCTACTTTAAGACAGATATTTTATACCAGATGGGCTTAGCTCAGGAGCCCGATAATACACTGCTACTGTCAAACTATGCAAAATTCCTCTACCTCGTGGCTCATGATCATGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

449

Amino Acids

50.7

Weight (kDa)

4.75

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24140 FvH4_7g24140 FvH4_7g24140 FvH4_7g24140
malus_domestica	MD01G1148600.v1.1 MD07G1215600.v1.1
prunus_persica	Prupe.2G247500_v2.0.a1
pyrus_communis	pycom07g19790
rosa_chinensis	RchiOBHm_Chr1g0369571
rosa_laevigata	RLG00000027118
rosa_multiflora	Rmu_sc0001154.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287520
rosa_rugosa	Rorug01G0351200 Rorug01G0351300 Rorug01G0351400
rosa_samantha	Rh1AG359500 Rh1BG323200 Rh1CG336500 Rh1DG354000
rosa_wichuraiana	Rw1G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	775
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AccII	CGCG	1 cut(s)	988
AciI	CCGC	2 cut(s)	938, 986
AclWI	GGATC	2 cut(s)	13, 1167
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	838, 1313
AcuI	CTGAAG	1 cut(s)	1077
AfaI	GTAC	3 cut(s)	371, 614, 710
AfiI	CCNNNNNNNGG	2 cut(s)	274, 379
AhdI	GACNNNNNGTC	1 cut(s)	918
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
AluBI	AGCT	8 cut(s)	210, 230, 430, 627, 673, 681, 1127, 1271
AluI	AGCT	8 cut(s)	210, 230, 430, 627, 673, 681, 1127, 1271
Alw26I	GTCTC	1 cut(s)	905
AlwI	GGATC	2 cut(s)	13, 1167
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	3 cut(s)	482, 639, 1030
ApoI	RAATTY	2 cut(s)	838, 1313
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	990
AspS9I	GGNCC	2 cut(s)	265, 1152
AsuC2I	CCSGG	2 cut(s)	10, 374
AsuHPI	GGTGA	2 cut(s)	792, 1185
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	265, 1152
AxyI	CCTNAGG	2 cut(s)	554, 1034
BalI	TGGCCA	1 cut(s)	484
BamHI	GGATCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	369
BanII	GRGCYC	2 cut(s)	1001, 1281
BauI	CACGAG	1 cut(s)	1325
BbsI	GAAGAC	1 cut(s)	723
BccI	CCATC	6 cut(s)	100, 265, 454, 959, 1016, 1255
BciVI	GTATCC	1 cut(s)	325
BclI	TGATCA	2 cut(s)	1041, 1336
BcnI	CCSGG	2 cut(s)	10, 374
BcoDI	GTCTC	1 cut(s)	905
BfaI	CTAG	5 cut(s)	81, 129, 231, 366, 506
BfuAI	ACCTGC	1 cut(s)	775
BfuI	GTATCC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	986
BlpI	GCTNAGC	1 cut(s)	1267
BlsI	GCNGC	1 cut(s)	987
Bme1390I	CCNGG	2 cut(s)	10, 374
Bme18I	GGWCC	2 cut(s)	265, 1152
BmeRI	GACNNNNNGTC	1 cut(s)	918
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	265, 1152
BmiI	GGNNCC	3 cut(s)	7, 371, 1278
BmrFI	CCNGG	2 cut(s)	10, 374
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu10I	CCTNAGC	2 cut(s)	468, 1272
Bpu1102I	GCTNAGC	1 cut(s)	1267
BpuMI	CCSGG	2 cut(s)	10, 374
BsaJI	CCNNGG	4 cut(s)	117, 651, 738, 1155
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 379
Bse1I	ACTGG	3 cut(s)	50, 485, 1002
Bse21I	CCTNAGG	2 cut(s)	554, 1034
Bse3DI	GCAATG	3 cut(s)	145, 403, 513
BseDI	CCNNGG	4 cut(s)	117, 651, 738, 1155
BseGI	GGATG	5 cut(s)	663, 707, 970, 979, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	274, 379
BseMI	GCAATG	3 cut(s)	145, 403, 513
BseMII	CTCAG	4 cut(s)	299, 459, 900, 1286
BseNI	ACTGG	3 cut(s)	50, 485, 1002
BseRI	GAGGAG	4 cut(s)	341, 403, 505, 1106
BsgI	GTGCAG	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	988
BshFI	GGCC	3 cut(s)	484, 641, 1032
BshNI	GGYRCC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	2 cut(s)	9, 374
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	2 cut(s)	274, 379
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	1 cut(s)	535
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	3 cut(s)	484, 641, 1032
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	1001, 1281
Bsp143I	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
Bsp1720I	GCTNAGC	1 cut(s)	1267
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	2 cut(s)	938, 986
BspANI	GGCC	3 cut(s)	484, 641, 1032
BspCNI	CTCAG	4 cut(s)	298, 460, 901, 1285
BspFNI	CGCG	1 cut(s)	988
BspHI	TCATGA	2 cut(s)	1333, 1339
BspLI	GGNNCC	3 cut(s)	7, 371, 1278
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	2 cut(s)	13, 1167
BspT107I	GGYRCC	1 cut(s)	369
BsrDI	GCAATG	3 cut(s)	145, 403, 513
BsrI	ACTGG	3 cut(s)	50, 485, 1002
BssECI	CCNNGG	4 cut(s)	117, 651, 738, 1155
BssMI	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
BssSI	CACGAG	1 cut(s)	1325
BssT1I	CCWWGG	3 cut(s)	117, 651, 738
Bst2BI	CACGAG	1 cut(s)	1325
Bst4CI	ACNGT	5 cut(s)	713, 847, 1177, 1204, 1299
Bst6I	CTCTTC	3 cut(s)	318, 582, 1053
BstAPI	GCANNNNNTGC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	1030, 1140
BstDEI	CTNAG	7 cut(s)	285, 468, 554, 909, 1034, 1267, 1272
BstDSI	CCRYGG	1 cut(s)	651
BstEII	GGTNACC	1 cut(s)	798
BstF5I	GGATG	5 cut(s)	663, 707, 970, 979, 1027
BstFNI	CGCG	1 cut(s)	988
BstHHI	GCGC	1 cut(s)	990
BstKTI	GATC	5 cut(s)	8, 828, 1044, 1162, 1339
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
BstMWI	GCNNNNNNNGC	4 cut(s)	451, 515, 524, 996
BstPI	GGTNACC	1 cut(s)	798
BstSCI	CCNGG	2 cut(s)	8, 372
BstUI	CGCG	1 cut(s)	988
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	2 cut(s)	5, 1159
BstXI	CCANNNNNNTGG	1 cut(s)	480
BstYI	RGATCY	2 cut(s)	5, 1159
Bsu36I	CCTNAGG	2 cut(s)	554, 1034
BsuI	GTATCC	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	484, 641, 1032
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	5 cut(s)	663, 707, 970, 979, 1027
BtsI	GCAGTG	2 cut(s)	615, 1289
BtsIMutI	CAGTG	4 cut(s)	615, 1009, 1119, 1289
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	2 cut(s)	1030, 1140
CciI	TCATGA	2 cut(s)	1333, 1339
CfoI	GCGC	1 cut(s)	990
Cfr13I	GGNCC	2 cut(s)	265, 1152
Csp6I	GTAC	3 cut(s)	370, 613, 709
CviAII	CATG	6 cut(s)	155, 652, 668, 811, 1334, 1340
CviQI	GTAC	3 cut(s)	370, 613, 709
DdeI	CTNAG	7 cut(s)	285, 468, 554, 909, 1034, 1267, 1272
DpnI	GATC	5 cut(s)	7, 827, 1043, 1161, 1338
DpnII	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
DriI	GACNNNNNGTC	1 cut(s)	918
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	3 cut(s)	318, 582, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	918
EarI	CTCTTC	3 cut(s)	318, 582, 1053
Eco130I	CCWWGG	3 cut(s)	117, 651, 738
Eco147I	AGGCCT	1 cut(s)	641
Eco24I	GRGCYC	2 cut(s)	1001, 1281
Eco47I	GGWCC	2 cut(s)	265, 1152
Eco57I	CTGAAG	1 cut(s)	1077
Eco81I	CCTNAGG	2 cut(s)	554, 1034
Eco88I	CYCGRG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	798
EcoO65I	GGTNACC	1 cut(s)	798
EcoT14I	CCWWGG	3 cut(s)	117, 651, 738
EcoT38I	GRGCYC	2 cut(s)	1001, 1281
ErhI	CCWWGG	3 cut(s)	117, 651, 738
FaeI	CATG	6 cut(s)	158, 655, 671, 814, 1337, 1343
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	6 cut(s)	154, 651, 667, 810, 1333, 1339
FbaI	TGATCA	2 cut(s)	1041, 1336
Fnu4HI	GCNGC	1 cut(s)	986
FokI	GGATG	5 cut(s)	650, 714, 977, 986, 1034
FriOI	GRGCYC	2 cut(s)	1001, 1281
Fsp4HI	GCNGC	1 cut(s)	986
FspBI	CTAG	5 cut(s)	81, 129, 231, 366, 506
GlaI	GCGC	1 cut(s)	989
GluI	GCNGC	1 cut(s)	986
HaeIII	GGCC	3 cut(s)	484, 641, 1032
HapII	CCGG	2 cut(s)	9, 374
HhaI	GCGC	1 cut(s)	990
Hin1II	CATG	6 cut(s)	158, 655, 671, 814, 1337, 1343
Hin6I	GCGC	1 cut(s)	988
HinP1I	GCGC	1 cut(s)	988
HindIII	AAGCTT	2 cut(s)	428, 1125
HinfI	GANTC	3 cut(s)	46, 805, 1207
HpaII	CCGG	2 cut(s)	9, 374
HphI	GGTGA	2 cut(s)	792, 1185
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	2 cut(s)	265, 288
Hpy188III	TCNNGA	8 cut(s)	467, 597, 881, 1163, 1211, 1274, 1334, 1340
Hpy8I	GTNNAC	1 cut(s)	615
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	371, 652
HpyCH4III	ACNGT	5 cut(s)	713, 847, 1177, 1204, 1299
HpyCH4V	TGCA	6 cut(s)	412, 518, 745, 1138, 1180, 1310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	451, 515, 524, 996
HpyF3I	CTNAG	7 cut(s)	285, 468, 554, 909, 1034, 1267, 1272
Hsp92II	CATG	6 cut(s)	158, 655, 671, 814, 1337, 1343
HspAI	GCGC	1 cut(s)	988
KpnI	GGTACC	1 cut(s)	373
Ksp22I	TGATCA	2 cut(s)	1041, 1336
Kzo9I	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
LmnI	GCTCC	1 cut(s)	1276
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	5 cut(s)	81, 129, 231, 366, 506
MaeIII	GTNAC	3 cut(s)	798, 1191, 1198
MalI	GATC	5 cut(s)	7, 827, 1043, 1161, 1338
MboI	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
MboII	GAAGA	9 cut(s)	69, 105, 335, 577, 580, 599, 728, 1070, 1133
MflI	RGATCY	2 cut(s)	5, 1159
MhlI	GDGCHC	2 cut(s)	1001, 1281
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	9 cut(s)	278, 297, 413, 498, 729, 838, 1145, 1184, 1313
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	1 cut(s)	799
MmeI	TCCRAC	3 cut(s)	243, 273, 1076
Mox20I	TGGCCA	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	6 cut(s)	197, 432, 462, 689, 723, 1239
MslI	CAYNNNNRTG	4 cut(s)	681, 769, 893, 1338
Msp20I	TGGCCA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	940
MspI	CCGG	2 cut(s)	9, 374
MspR9I	CCNGG	2 cut(s)	10, 374
Mva1269I	GAATGC	1 cut(s)	874
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	4 cut(s)	451, 515, 524, 996
NciI	CCSGG	2 cut(s)	10, 374
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
NlaIII	CATG	6 cut(s)	158, 655, 671, 814, 1337, 1343
NlaIV	GGNNCC	3 cut(s)	7, 371, 1278
NmuCI	GTSAC	2 cut(s)	798, 1191
PaeR7I	CTCGAG	1 cut(s)	536
PagI	TCATGA	2 cut(s)	1333, 1339
PceI	AGGCCT	1 cut(s)	641
PctI	GAATGC	1 cut(s)	874
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	46, 1207
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	987
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
PshBI	ATTAAT	1 cut(s)	462
PspEI	GGTNACC	1 cut(s)	798
PspN4I	GGNNCC	3 cut(s)	7, 371, 1278
PspPI	GGNCC	2 cut(s)	265, 1152
PspXI	VCTCGAGB	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	5, 1159
RsaI	GTAC	3 cut(s)	371, 614, 710
RsaNI	GTAC	3 cut(s)	370, 613, 709
RseI	CAYNNNNRTG	4 cut(s)	681, 769, 893, 1338
SaqAI	TTAA	6 cut(s)	197, 432, 462, 689, 723, 1239
SatI	GCNGC	1 cut(s)	986
Sau3AI	GATC	5 cut(s)	5, 825, 1041, 1159, 1336
Sau96I	GGNCC	2 cut(s)	265, 1152
SchI	GAGTC	1 cut(s)	799
ScrFI	CCNGG	2 cut(s)	10, 374
SduI	GDGCHC	2 cut(s)	1001, 1281
SfaNI	GCATC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	536
SinI	GGWCC	2 cut(s)	265, 1152
SlaI	CTCGAG	1 cut(s)	536
SmiMI	CAYNNNNRTG	4 cut(s)	681, 769, 893, 1338
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	9 cut(s)	278, 297, 413, 498, 729, 838, 1145, 1184, 1313
SseBI	AGGCCT	1 cut(s)	641
SsiI	CCGC	2 cut(s)	938, 986
SspMI	CTAG	5 cut(s)	81, 129, 231, 366, 506
StuI	AGGCCT	1 cut(s)	641
StyD4I	CCNGG	2 cut(s)	8, 372
StyI	CCWWGG	3 cut(s)	117, 651, 738
TaaI	ACNGT	5 cut(s)	713, 847, 1177, 1204, 1299
TaqI	TCGA	6 cut(s)	101, 188, 359, 419, 537, 1212
TaqII	GACCGA	1 cut(s)	1169
TasI	AATT	9 cut(s)	278, 297, 413, 498, 729, 838, 1145, 1184, 1313
TatI	WGTACW	2 cut(s)	612, 708
TauI	GCSGC	1 cut(s)	988
TfiI	GAWTC	2 cut(s)	46, 1207
Tru1I	TTAA	6 cut(s)	197, 432, 462, 689, 723, 1239
Tru9I	TTAA	6 cut(s)	197, 432, 462, 689, 723, 1239
TscAI	CASTG	4 cut(s)	622, 1009, 1119, 1296
TseFI	GTSAC	2 cut(s)	798, 1191
Tsp45I	GTSAC	2 cut(s)	798, 1191
TspDTI	ATGAA	9 cut(s)	155, 270, 336, 753, 770, 872, 948, 990, 1185
TspRI	CASTG	4 cut(s)	622, 1009, 1119, 1296
VpaK11BI	GGWCC	2 cut(s)	265, 1152
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	838, 1313
XhoI	CTCGAG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	5 cut(s)	81, 129, 231, 366, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.