Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011594

Physical Location & Seq

Genomic Coordinates Reverse (-)

46859696 .. 46860727

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGACAATTTCCCCTATTACTGGGGAGCTTGTCCCTAACAATGAGATGTCTGAGCACATGAAGATTTCCCTCATTGATCCAAGATACAGAGAACAGAAAGAAAGGATGTTTGCTAAGATTCGGGAGACTAGTCTTGTTCTTGCACAGGACGATCAGATCTCAAGAAACATAGTGAACCTTGCACGGACCCGTCCTGATATTTTTGGTTCCACCGAGGAGGAAGTTTCAAATGCTGTCAAGGCTGAGATTCAAAATCAAGCGATATCACAGAGTATCAATGGAGAGGATAAGAATGATGCTGTGAACAATGAGCTAAGGAACTTTCCTGGTCCAGCAAGACCTGACATGCCTTCAGTTCGACCTCAACCTCCACCAACTGGCCTTCTTCCTCGTGTTCCTCTAAGCACGGTTCAGTGTTCAGCTCCTAATAGCATTGGCCTCCCAATACCTCCTCCAGTTGTCCAATTTCCATACGTTGGAGCTCCTCTGCCACCTCAATCAATATTTACGAATGCAACTAATATTCCTGCACCATCTCCACCTGTAGCTCAGTTTACACCTATGCAAGTTCCCCAAAGGAATTATATTCCTCCACCTTCAGTGCATATGATGCCCCTGCCTCCACCACCACCTTTACCTCAAGAAATGCATCTACCACCACCACCACCACCTCCAGTTGCAGAGGAGGAACCCAAGCCAAAGCGACAGAAGCTCGATGATTCAATGCTTATTCCAGAAGATAAATTTCTGGCACAGCATCCGGGACCAGTTGACATGAATGTATCTGCTCCTATTGTTGATGAAGGTAACCTCAAAGGCCAACTTCTACAGATCACGGTGCAGTCTTTATCTGAAACTGTTGGCAGTCTGAAAGAGAAAATTTCTGCAGAAGTCCAACTTCCGGCAAACAAACAGAAATTGAGTGGAAAATCAAGCTTTCTCAAGGATAATTTTTCACTTGCATATTACAATGTTGGCGCAGGACAAACACTCGCTCTTTCAATAAGAGAGCGCGGTGGAAGGAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

37.57

Weight (kDa)

6.47

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP21_like_P	PF12230	3 - 62	1.4e-18	Pre-mRNA splicing factor PRP21 like protein
ubiquitin	PF00240	282 - 338	1.6e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24140 FvH4_7g24140 FvH4_7g24140 FvH4_7g24140
malus_domestica	MD01G1148600.v1.1 MD07G1215600.v1.1
prunus_persica	Prupe.2G247500_v2.0.a1
pyrus_communis	pycom07g19790
rosa_chinensis	RchiOBHm_Chr1g0369571
rosa_laevigata	RLG00000027118
rosa_multiflora	Rmu_sc0001154.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287520
rosa_rugosa	Rorug01G0351200 Rorug01G0351300 Rorug01G0351400
rosa_samantha	Rh1AG359500 Rh1BG323200 Rh1CG336500 Rh1DG354000
rosa_wichuraiana	Rw1G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	377, 476
AccII	CGCG	1 cut(s)	1014
AciI	CCGC	1 cut(s)	1014
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	743, 879
AcuI	CTGAAG	2 cut(s)	336, 582
AfiI	CCNNNNNNNGG	4 cut(s)	20, 377, 476, 901
AgsI	TTSAA	4 cut(s)	228, 251, 723, 1002
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	7 cut(s)	28, 313, 422, 482, 548, 712, 936
AluI	AGCT	7 cut(s)	28, 313, 422, 482, 548, 712, 936
Alw21I	GWGCWC	2 cut(s)	57, 484
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	3 cut(s)	379, 436, 817
ApoI	RAATTY	2 cut(s)	743, 879
AspLEI	GCGC	2 cut(s)	980, 1014
AspS9I	GGNCC	3 cut(s)	186, 329, 764
AsuC2I	CCSGG	1 cut(s)	762
AvaII	GGWCC	3 cut(s)	186, 329, 764
BanII	GRGCYC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	57, 484
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	762
BcoDI	GTCTC	1 cut(s)	119
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	3 cut(s)	543, 827, 885
BglII	AGATCT	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	327, 762
Bme18I	GGWCC	3 cut(s)	186, 329, 764
BmgT120I	GGNCC	3 cut(s)	186, 329, 764
BmiI	GGNNCC	4 cut(s)	188, 208, 690, 765
BmrFI	CCNGG	2 cut(s)	327, 762
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	4 cut(s)	286, 600, 658, 766
BmuI	ACTGGG	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	438, 657
Bpu10I	CCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	3 cut(s)	145, 624, 926
BpuMI	CCSGG	1 cut(s)	762
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 377, 476, 901
Bse1I	ACTGG	5 cut(s)	25, 382, 455, 674, 767
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	111, 757
BseLI	CCNNNNNNNGG	4 cut(s)	20, 377, 476, 901
BseMII	CTCAG	3 cut(s)	42, 234, 563
BseNI	ACTGG	5 cut(s)	25, 382, 455, 674, 767
BseRI	GAGGAG	4 cut(s)	230, 441, 474, 698
BsgI	GTGCAG	2 cut(s)	513, 860
Bsh1236I	CGCG	1 cut(s)	1014
BshFI	GGCC	3 cut(s)	381, 438, 819
BsiHKAI	GWGCWC	2 cut(s)	57, 484
BsiSI	CCGG	2 cut(s)	761, 902
BslFI	GGGAC	2 cut(s)	17, 777
BslI	CCNNNNNNNGG	4 cut(s)	20, 377, 476, 901
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	17, 777
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	381, 438, 819
Bsp1286I	GDGCHC	2 cut(s)	57, 484
Bsp143I	GATC	4 cut(s)	76, 151, 156, 831
BspACI	CCGC	1 cut(s)	1014
BspANI	GGCC	3 cut(s)	381, 438, 819
BspCNI	CTCAG	3 cut(s)	43, 235, 562
BspFNI	CGCG	1 cut(s)	1014
BspLI	GGNNCC	4 cut(s)	188, 208, 690, 765
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	1 cut(s)	71
BsrI	ACTGG	5 cut(s)	25, 382, 455, 674, 767
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	4 cut(s)	76, 151, 156, 831
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	3 cut(s)	409, 838, 859
Bst6I	CTCTTC	1 cut(s)	1019
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstDEI	CTNAG	6 cut(s)	51, 114, 243, 314, 401, 549
BstEII	GGTNACC	1 cut(s)	806
BstF5I	GGATG	2 cut(s)	111, 757
BstFNI	CGCG	1 cut(s)	1014
BstHHI	GCGC	2 cut(s)	980, 1014
BstKTI	GATC	4 cut(s)	79, 154, 159, 834
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	4 cut(s)	76, 151, 156, 831
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 610, 709
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	806
BstSCI	CCNGG	2 cut(s)	325, 760
BstSFI	CTRYAG	3 cut(s)	543, 827, 885
BstUI	CGCG	1 cut(s)	1014
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	381, 438, 819
BtsCI	GGATG	2 cut(s)	111, 757
BtsIMutI	CAGTG	2 cut(s)	419, 606
CfoI	GCGC	2 cut(s)	980, 1014
Cfr13I	GGNCC	3 cut(s)	186, 329, 764
CviAII	CATG	3 cut(s)	58, 346, 775
DdeI	CTNAG	6 cut(s)	51, 114, 243, 314, 401, 549
DpnI	GATC	4 cut(s)	78, 153, 158, 833
DpnII	GATC	4 cut(s)	76, 151, 156, 831
Eam1104I	CTCTTC	1 cut(s)	1019
EarI	CTCTTC	1 cut(s)	1019
Ecl136II	GAGCTC	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	264
Eco47I	GGWCC	3 cut(s)	186, 329, 764
Eco53kI	GAGCTC	1 cut(s)	482
Eco57I	CTGAAG	2 cut(s)	336, 582
Eco91I	GGTNACC	1 cut(s)	806
EcoICRI	GAGCTC	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	806
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	484
FaeI	CATG	3 cut(s)	61, 349, 778
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 882, 914
FaqI	GGGAC	2 cut(s)	17, 777
FatI	CATG	3 cut(s)	57, 345, 774
FauNDI	CATATG	1 cut(s)	606
FokI	GGATG	2 cut(s)	118, 744
FriOI	GRGCYC	1 cut(s)	484
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	979, 1013
GsuI	CTGGAG	2 cut(s)	438, 657
HaeIII	GGCC	3 cut(s)	381, 438, 819
HapII	CCGG	2 cut(s)	761, 902
HhaI	GCGC	2 cut(s)	980, 1014
Hin1II	CATG	3 cut(s)	61, 349, 778
Hin6I	GCGC	2 cut(s)	978, 1012
HinP1I	GCGC	2 cut(s)	978, 1012
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	934
HinfI	GANTC	3 cut(s)	118, 247, 719
HpaII	CCGG	2 cut(s)	761, 902
Hpy166II	GTNNAC	4 cut(s)	175, 304, 555, 772
Hpy188I	TCNGA	4 cut(s)	52, 156, 853, 870
Hpy188III	TCNNGA	5 cut(s)	122, 162, 194, 641, 734
Hpy8I	GTNNAC	4 cut(s)	175, 304, 555, 772
HpyAV	CCTTC	5 cut(s)	360, 392, 606, 797, 1014
HpyCH4III	ACNGT	3 cut(s)	409, 838, 859
HpyCH4IV	ACGT	1 cut(s)	474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 610, 709
HpyF3I	CTNAG	6 cut(s)	51, 114, 243, 314, 401, 549
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	61, 349, 778
HspAI	GCGC	2 cut(s)	978, 1012
Kzo9I	GATC	4 cut(s)	76, 151, 156, 831
LmnI	GCTCC	5 cut(s)	25, 427, 479, 487, 793
LweI	GCATC	4 cut(s)	286, 600, 658, 766
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	806
MalI	GATC	4 cut(s)	78, 153, 158, 833
MboI	GATC	4 cut(s)	76, 151, 156, 831
MboII	GAAGA	3 cut(s)	73, 377, 749
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	57, 484
MluCI	AATT	7 cut(s)	6, 464, 580, 743, 879, 917, 949
MmeI	TCCRAC	2 cut(s)	457, 919
Mph1103I	ATGCAT	1 cut(s)	651
MspI	CCGG	2 cut(s)	761, 902
MspR9I	CCNGG	2 cut(s)	327, 762
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	1014
MwoI	GCNNNNNNNGC	3 cut(s)	239, 610, 709
NciI	CCSGG	1 cut(s)	762
NdeI	CATATG	1 cut(s)	606
NdeII	GATC	4 cut(s)	76, 151, 156, 831
NlaIII	CATG	3 cut(s)	61, 349, 778
NlaIV	GGNNCC	4 cut(s)	188, 208, 690, 765
NsiI	ATGCAT	1 cut(s)	651
NspI	RCATGY	1 cut(s)	349
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	3 cut(s)	118, 247, 719
PflMI	CCANNNNNTGG	2 cut(s)	377, 476
PfoI	TCCNGGA	1 cut(s)	760
Psp124BI	GAGCTC	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	4 cut(s)	188, 208, 690, 765
PspPI	GGNCC	3 cut(s)	186, 329, 764
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	484
Sau3AI	GATC	4 cut(s)	76, 151, 156, 831
Sau96I	GGNCC	3 cut(s)	186, 329, 764
ScrFI	CCNGG	2 cut(s)	327, 762
SduI	GDGCHC	2 cut(s)	57, 484
SfaNI	GCATC	4 cut(s)	286, 600, 658, 766
SfcI	CTRYAG	3 cut(s)	543, 827, 885
SinI	GGWCC	3 cut(s)	186, 329, 764
SmlI	CTYRAG	3 cut(s)	160, 639, 941
SmoI	CTYRAG	3 cut(s)	160, 639, 941
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	7 cut(s)	6, 464, 580, 743, 879, 917, 949
SsiI	CCGC	1 cut(s)	1014
SspI	AATATT	2 cut(s)	504, 523
SspMI	CTAG	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	484
StyD4I	CCNGG	2 cut(s)	325, 760
TaaI	ACNGT	3 cut(s)	409, 838, 859
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	358, 714
TasI	AATT	7 cut(s)	6, 464, 580, 743, 879, 917, 949
TfiI	GAWTC	3 cut(s)	118, 247, 719
TscAI	CASTG	2 cut(s)	419, 606
TspDTI	ATGAA	3 cut(s)	74, 791, 816
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	419, 606
Van91I	CCANNNNNTGG	2 cut(s)	377, 476
VpaK11BI	GGWCC	3 cut(s)	186, 329, 764
XapI	RAATTY	2 cut(s)	743, 879
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.