Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011594

Physical Location & Seq

Genomic Coordinates Reverse (-)

59815803 .. 59818909

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G031680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTCAAAAGTTTCGAGGTCTAGGTACCCGGAAGGGGAAAAGAGGAGAGGCAATGGTTTTTCAATGCAATTTTCGAGGTTCAAGCTTAATGCTTTAGAGCCATCTTTGCTTGGGATTAATCCTGAGCCACCAGACTGGCCAGAGAGGAGTGAAATTGTTCTAGCAGACATTGCACGAAAGGCAAACAGCCTCGAGTTTCCAATGTCCCTTAGGTTGTTGAAGAAGAAGCATCAACAATGGGAAGAGAGTTCCAGAGAAGTAGGGGAGTACACTGCTTTTAGCTCTTTGAACAAGGCCTTCTCGTCCATGGTGTTTATCATCCATGAGCTTCACAGCTATGCTTTAAGTATAGGGGGATGTCTGTACTGTGAAGACTTTAAGGAAATTATATCCAAGGTGCAGAGAGAAATGAACTTTTCATTTGTGTGGTTGTTTCAGCAGGTCTTTTCAAGGTCACCGACTCTCATGGTGTATGTGATGATCTTGTTGGCGAATTTCACGGTTTATTCAATGAATGGTAAGAATGCTGTTATTCCAGATACCACTCCTATGCCTGATGTGGCTGAGACTTTGGGTCTGTTTCTGTATGAACCGCTGGAACGACCCTGCGTGTATTGGGATGGGGAGGATGAATGTGAGCCGCGCAAAGTGAGCCCCAGTGAAAGTGAGAACAAGGATGGGGCTGGCCTTAGGTTGATCAAGTTTCCAACTGAAGAGATATTTGGTGTTTCGTCATTGAATAATGAGGAGTTGAATGTGTGGAAATCAGTGCTGGAAGAAGCTTCAAATATGCAGGCAGAATTGAGGACCGAGGATCTTGATTATGAAACTGTGCAACAATTTGTGTCACCTGTAACTGTGAATCTCGAAGCAGATGATTATGAGTGCTACTTTAAGACAGATATTTTATACCAGATGGGCTTAGCTCAGGAGCCCGATAATACACTGCTACTGTCAAACTATGCAAAATTCCTCTACCTCGTGGCTCATGATCATGACAGGGCGGAGGAGTGCTTTAGGCGAGCAGTGCAATCTGAGAAACCTGATGCCGAGGCTTTGAGCCTATATGCAGACTTCTTGTGGTATGTAAGGAACGACATTTGGGGTGCGGAAGAGAGATACGTGCAAGCAGTGTCAGCTGAGCCCTCGAGCCCCTATTACGCCTCCAGGTATGCCCGTTTCCTTTGGCACACCGGGGGCACTGACACTTGCTACCCTCTTGAATCCTATGATAAAGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

414

Amino Acids

47.75

Weight (kDa)

4.77

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24140 FvH4_7g24140 FvH4_7g24140 FvH4_7g24140
malus_domestica	MD01G1148600.v1.1 MD07G1215600.v1.1
prunus_persica	Prupe.2G247500_v2.0.a1
pyrus_communis	pycom07g19790
rosa_chinensis	RchiOBHm_Chr1g0369571
rosa_laevigata	RLG00000027118
rosa_multiflora	Rmu_sc0001154.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287520
rosa_rugosa	Rorug01G0351200 Rorug01G0351300 Rorug01G0351400
rosa_samantha	Rh1AG359500 Rh1BG323200 Rh1CG336500 Rh1DG354000
rosa_wichuraiana	Rw1G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
Acc65I	GGTACC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	24
AccII	CGCG	1 cut(s)	643
AciI	CCGC	4 cut(s)	593, 641, 1004, 1109
AclWI	GGATC	1 cut(s)	822
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	493, 968
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	3 cut(s)	26, 269, 365
AfiI	CCNNNNNNNGG	1 cut(s)	34
AhdI	GACNNNNNGTC	1 cut(s)	573
AjnI	CCWGG	1 cut(s)	1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	7 cut(s)	85, 282, 328, 336, 782, 926, 1139
AluI	AGCT	7 cut(s)	85, 282, 328, 336, 782, 926, 1139
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	822
Ama87I	CYCGRG	2 cut(s)	191, 1147
AoxI	GGCC	3 cut(s)	137, 294, 685
ApoI	RAATTY	2 cut(s)	493, 968
AseI	ATTAAT	1 cut(s)	117
Asp700I	GAANNNNTTC	1 cut(s)	156
Asp718I	GGTACC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	807
AsuC2I	CCSGG	2 cut(s)	29, 1195
AsuHPI	GGTGA	2 cut(s)	447, 840
AvaI	CYCGRG	2 cut(s)	191, 1147
AvaII	GGWCC	1 cut(s)	807
AxyI	CCTNAGG	2 cut(s)	209, 689
BaeGI	GKGCMC	1 cut(s)	1202
BalI	TGGCCA	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	24
BanII	GRGCYC	4 cut(s)	656, 936, 1146, 1154
BauI	CACGAG	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	378
BccI	CCATC	4 cut(s)	109, 614, 671, 910
BciT130I	CCWGG	1 cut(s)	1168
BclI	TGATCA	2 cut(s)	696, 991
BcnI	CCSGG	2 cut(s)	29, 1195
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	2 cut(s)	21, 161
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	641
BlpI	GCTNAGC	2 cut(s)	922, 1140
BlsI	GCNGC	1 cut(s)	642
Bme1390I	CCNGG	3 cut(s)	29, 1168, 1195
Bme18I	GGWCC	1 cut(s)	807
BmeRI	GACNNNNNGTC	1 cut(s)	573
BmeT110I	CYCGRG	2 cut(s)	191, 1147
BmgT120I	GGNCC	1 cut(s)	807
BmiI	GGNNCC	2 cut(s)	26, 933
BmrFI	CCNGG	3 cut(s)	29, 1168, 1195
BmrI	ACTGGG	1 cut(s)	651
BmsI	GCATC	2 cut(s)	238, 1036
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	1150
Bpu10I	CCTNAGC	2 cut(s)	123, 927
Bpu1102I	GCTNAGC	2 cut(s)	922, 1140
BpuMI	CCSGG	2 cut(s)	29, 1195
BsaAI	YACGTR	1 cut(s)	1123
BsaJI	CCNNGG	5 cut(s)	306, 393, 810, 1050, 1194
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	2 cut(s)	140, 657
Bse21I	CCTNAGG	2 cut(s)	209, 689
Bse3DI	GCAATG	2 cut(s)	58, 168
BseBI	CCWGG	1 cut(s)	1168
BseDI	CCNNGG	5 cut(s)	306, 393, 810, 1050, 1194
BseGI	GGATG	5 cut(s)	318, 362, 625, 634, 682
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	2 cut(s)	58, 168
BseMII	CTCAG	5 cut(s)	114, 555, 941, 1026, 1131
BseNI	ACTGG	2 cut(s)	140, 657
BseRI	GAGGAG	4 cut(s)	58, 160, 761, 1022
BseSI	GKGCMC	1 cut(s)	1202
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	643
BshFI	GGCC	3 cut(s)	139, 296, 687
BshNI	GGYRCC	1 cut(s)	24
BsiHKCI	CYCGRG	2 cut(s)	191, 1147
BsiSI	CCGG	2 cut(s)	29, 1194
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	139, 296, 687
BsoBI	CYCGRG	2 cut(s)	191, 1147
Bsp1286I	GDGCHC	5 cut(s)	656, 936, 1146, 1154, 1202
Bsp143I	GATC	4 cut(s)	480, 696, 814, 991
Bsp1720I	GCTNAGC	2 cut(s)	922, 1140
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	4 cut(s)	593, 641, 1004, 1109
BspANI	GGCC	3 cut(s)	139, 296, 687
BspCNI	CTCAG	5 cut(s)	115, 556, 940, 1027, 1132
BspFNI	CGCG	1 cut(s)	643
BspHI	TCATGA	2 cut(s)	988, 994
BspLI	GGNNCC	2 cut(s)	26, 933
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	822
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	2 cut(s)	58, 168
BsrI	ACTGG	2 cut(s)	140, 657
BssECI	CCNNGG	5 cut(s)	306, 393, 810, 1050, 1194
BssMI	GATC	4 cut(s)	480, 696, 814, 991
BssSI	CACGAG	1 cut(s)	980
BssT1I	CCWWGG	2 cut(s)	306, 393
Bst2BI	CACGAG	1 cut(s)	980
Bst2UI	CCWGG	1 cut(s)	1168
Bst4CI	ACNGT	5 cut(s)	368, 502, 832, 859, 954
Bst6I	CTCTTC	3 cut(s)	237, 708, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	1123
BstC8I	GCNNGC	4 cut(s)	685, 795, 1023, 1128
BstDEI	CTNAG	8 cut(s)	123, 209, 564, 689, 922, 927, 1035, 1140
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	453
BstF5I	GGATG	5 cut(s)	318, 362, 625, 634, 682
BstFNI	CGCG	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	4 cut(s)	483, 699, 817, 994
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	4 cut(s)	480, 696, 814, 991
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 170, 179, 651, 1027, 1136
BstNI	CCWGG	1 cut(s)	1168
BstPI	GGTNACC	1 cut(s)	453
BstSCI	CCNGG	3 cut(s)	27, 1166, 1193
BstSLI	GKGCMC	1 cut(s)	1202
BstUI	CGCG	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	814
BstXI	CCANNNNNNTGG	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	814
Bsu36I	CCTNAGG	2 cut(s)	209, 689
BsuRI	GGCC	3 cut(s)	139, 296, 687
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	5 cut(s)	318, 362, 625, 634, 682
BtsI	GCAGTG	4 cut(s)	270, 944, 1032, 1137
BtsIMutI	CAGTG	7 cut(s)	270, 664, 774, 944, 1032, 1137, 1200
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	4 cut(s)	685, 795, 1023, 1128
CciI	TCATGA	2 cut(s)	988, 994
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	807
Csp6I	GTAC	3 cut(s)	25, 268, 364
CviAII	CATG	5 cut(s)	307, 323, 466, 989, 995
CviQI	GTAC	3 cut(s)	25, 268, 364
DdeI	CTNAG	8 cut(s)	123, 209, 564, 689, 922, 927, 1035, 1140
DpnI	GATC	4 cut(s)	482, 698, 816, 993
DpnII	GATC	4 cut(s)	480, 696, 814, 991
DriI	GACNNNNNGTC	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	137
Eam1104I	CTCTTC	3 cut(s)	237, 708, 1107
Eam1105I	GACNNNNNGTC	1 cut(s)	573
EarI	CTCTTC	3 cut(s)	237, 708, 1107
EciI	GGCGGA	1 cut(s)	1019
Eco130I	CCWWGG	2 cut(s)	306, 393
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	4 cut(s)	656, 936, 1146, 1154
Eco47I	GGWCC	1 cut(s)	807
Eco57I	CTGAAG	1 cut(s)	732
Eco81I	CCTNAGG	2 cut(s)	209, 689
Eco88I	CYCGRG	2 cut(s)	191, 1147
Eco91I	GGTNACC	1 cut(s)	453
EcoO65I	GGTNACC	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	1166
EcoT14I	CCWWGG	2 cut(s)	306, 393
EcoT38I	GRGCYC	4 cut(s)	656, 936, 1146, 1154
ErhI	CCWWGG	2 cut(s)	306, 393
FaeI	CATG	5 cut(s)	310, 326, 469, 992, 998
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	5 cut(s)	306, 322, 465, 988, 994
FbaI	TGATCA	2 cut(s)	696, 991
Fnu4HI	GCNGC	1 cut(s)	641
FokI	GGATG	5 cut(s)	305, 369, 632, 641, 689
FriOI	GRGCYC	4 cut(s)	656, 936, 1146, 1154
Fsp4HI	GCNGC	1 cut(s)	641
FspBI	CTAG	2 cut(s)	21, 161
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	1150
HaeIII	GGCC	3 cut(s)	139, 296, 687
HapII	CCGG	2 cut(s)	29, 1194
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	5 cut(s)	310, 326, 469, 992, 998
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HindIII	AAGCTT	2 cut(s)	83, 780
HinfI	GANTC	3 cut(s)	460, 862, 1223
HpaII	CCGG	2 cut(s)	29, 1194
HphI	GGTGA	2 cut(s)	447, 840
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	1036
Hpy188III	TCNNGA	9 cut(s)	122, 252, 536, 818, 866, 929, 989, 995, 1220
Hpy8I	GTNNAC	1 cut(s)	270
HpyAV	CCTTC	2 cut(s)	26, 307
HpyCH4III	ACNGT	5 cut(s)	368, 502, 832, 859, 954
HpyCH4IV	ACGT	1 cut(s)	1122
HpyCH4V	TGCA	9 cut(s)	67, 173, 400, 793, 835, 965, 1030, 1070, 1126
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 170, 179, 651, 1027, 1136
HpyF3I	CTNAG	8 cut(s)	123, 209, 564, 689, 922, 927, 1035, 1140
HpySE526I	ACGT	1 cut(s)	1122
Hsp92II	CATG	5 cut(s)	310, 326, 469, 992, 998
HspAI	GCGC	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	28
Ksp22I	TGATCA	2 cut(s)	696, 991
Kzo9I	GATC	4 cut(s)	480, 696, 814, 991
LmnI	GCTCC	1 cut(s)	931
LweI	GCATC	2 cut(s)	238, 1036
MaeI	CTAG	2 cut(s)	21, 161
MaeII	ACGT	1 cut(s)	1122
MaeIII	GTNAC	3 cut(s)	453, 846, 853
MalI	GATC	4 cut(s)	482, 698, 816, 993
MboI	GATC	4 cut(s)	480, 696, 814, 991
MboII	GAAGA	7 cut(s)	232, 235, 254, 383, 725, 788, 1124
MflI	RGATCY	1 cut(s)	814
MhlI	GDGCHC	5 cut(s)	656, 936, 1146, 1154, 1202
MlsI	TGGCCA	1 cut(s)	139
MluCI	AATT	7 cut(s)	68, 153, 384, 493, 800, 839, 968
MluNI	TGGCCA	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	1 cut(s)	731
Mox20I	TGGCCA	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	139
MseI	TTAA	5 cut(s)	87, 117, 344, 378, 894
MslI	CAYNNNNRTG	4 cut(s)	336, 424, 548, 993
Msp20I	TGGCCA	1 cut(s)	139
MspA1I	CMGCKG	2 cut(s)	595, 1139
MspI	CCGG	2 cut(s)	29, 1194
MspR9I	CCNGG	3 cut(s)	29, 1168, 1195
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	1168
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	6 cut(s)	106, 170, 179, 651, 1027, 1136
NciI	CCSGG	2 cut(s)	29, 1195
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	4 cut(s)	480, 696, 814, 991
NlaIII	CATG	5 cut(s)	310, 326, 469, 992, 998
NlaIV	GGNNCC	2 cut(s)	26, 933
NmeAIII	GCCGAG	1 cut(s)	1075
NmuCI	GTSAC	2 cut(s)	453, 846
PaeR7I	CTCGAG	2 cut(s)	191, 1147
PagI	TCATGA	2 cut(s)	988, 994
PceI	AGGCCT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	862, 1223
PkrI	GCNGC	1 cut(s)	642
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	1123
PshBI	ATTAAT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	1166
PspEI	GGTNACC	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	1166
PspN4I	GGNNCC	2 cut(s)	26, 933
PspPI	GGNCC	1 cut(s)	807
PspXI	VCTCGAGB	2 cut(s)	191, 1147
PsuI	RGATCY	1 cut(s)	814
PvuII	CAGCTG	1 cut(s)	1139
RsaI	GTAC	3 cut(s)	26, 269, 365
RsaNI	GTAC	3 cut(s)	25, 268, 364
RseI	CAYNNNNRTG	4 cut(s)	336, 424, 548, 993
SaqAI	TTAA	5 cut(s)	87, 117, 344, 378, 894
SatI	GCNGC	1 cut(s)	641
Sau3AI	GATC	4 cut(s)	480, 696, 814, 991
Sau96I	GGNCC	1 cut(s)	807
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	3 cut(s)	29, 1168, 1195
SduI	GDGCHC	5 cut(s)	656, 936, 1146, 1154, 1202
SfaNI	GCATC	2 cut(s)	238, 1036
Sfr274I	CTCGAG	2 cut(s)	191, 1147
SinI	GGWCC	1 cut(s)	807
SlaI	CTCGAG	2 cut(s)	191, 1147
SmiMI	CAYNNNNRTG	4 cut(s)	336, 424, 548, 993
SmlI	CTYRAG	2 cut(s)	191, 1147
SmoI	CTYRAG	2 cut(s)	191, 1147
Sse9I	AATT	7 cut(s)	68, 153, 384, 493, 800, 839, 968
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	4 cut(s)	593, 641, 1004, 1109
SspMI	CTAG	2 cut(s)	21, 161
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	27, 1166, 1193
StyI	CCWWGG	2 cut(s)	306, 393
TaaI	ACNGT	5 cut(s)	368, 502, 832, 859, 954
TaiI	ACGT	1 cut(s)	1125
TaqI	TCGA	5 cut(s)	14, 74, 192, 867, 1148
TaqII	GACCGA	1 cut(s)	824
TasI	AATT	7 cut(s)	68, 153, 384, 493, 800, 839, 968
TatI	WGTACW	2 cut(s)	267, 363
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	2 cut(s)	862, 1223
Tru1I	TTAA	5 cut(s)	87, 117, 344, 378, 894
Tru9I	TTAA	5 cut(s)	87, 117, 344, 378, 894
TscAI	CASTG	7 cut(s)	277, 664, 774, 951, 1032, 1137, 1207
TseFI	GTSAC	2 cut(s)	453, 846
Tsp45I	GTSAC	2 cut(s)	453, 846
TspDTI	ATGAA	6 cut(s)	408, 425, 527, 603, 645, 840
TspRI	CASTG	7 cut(s)	277, 664, 774, 951, 1032, 1137, 1207
VpaK11BI	GGWCC	1 cut(s)	807
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	2 cut(s)	493, 968
XhoI	CTCGAG	2 cut(s)	191, 1147
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	21, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.