Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011594

Physical Location & Seq

Genomic Coordinates Reverse (-)

46860773 .. 46861771

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATGATGATAGGTTCCATCTTACCCTTACCAGCTCCTCCTGCAAAATCAGTTGCCACGCATACCAAGGCTATTGGTATCATACCTCCTCCTCCAGGAATCAAAGTCGTCATTGATAAAACTTCTCAGTTCGTGGCAAAGAACGGACCCCAATTTGAACAGGTCATAGCGAAGAATCTAGACATAGCAAAATCAAATCTAAGCTTTTTGATTTCCTCAAATCCCTACAATGCATATTATAAGCGCCGGGTGTCTGAATTCCTTGCCCAGCCTGATCAGTCTTATGAAGAGCCAGCTCCAGTTGTAGATGTTGAAGTTGGAGCACCAAAACCTGATTCTCCCTCCCAGCTTAGACCTGAATGCAAAGTGCCTGAACCATCAGAACCCGAAGAGTTTACTGTTCGGCTTCCTGAAGGAATTTGTGGAGAAGAACTAGATGTTATTAAACTCACAGCCCAGTTTGTAGCTCGGAATAGGAAATCGTTTTTGACAGGATTGAGAAGCAGAGAGATAAACAACCCCCTGTTCTATTTTCTCAAGCCTAATCATAGCATGTTCAACTTTTTCACTTCTCTGGCAGATGCATATTCAAAGGTGTTGATGCCACCAGAAGGATTGACAGGGAAACTCAAGAAGAGCGTGGCAGACATGTCTACTGTGCTAGAACGGTGTGTGCATCGGCTGGAGTGGGAGGCTTATCAAAAGAAGGCAAAGCAGAAGGCCGAAGATGAGATTGAGCAGGAAAGGTTACCAATGGCTGCAATTGATTGGCACAATAATGTCTTGGTCGAAGTCATAGACTTTGATGATGTTGAGGATGACTGTTTACCTCCTCCACTGAGCATCGAAGAGGTTATAAGGGGAAGCAAAGTTGTTATGGAAGCAGATGATAATGTCGAAATGGATATGGATGAAGAAGAGATGCAACTTGTTGAAGATGGAAAGAGGGTAACAAAGGTGGATCCAGAACAACCACCAATGAGAATTGTGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

37.33

Weight (kDa)

4.9

Isoelectric Point (pI)

53.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	37 - 87	4.8e-14	Surp module
Surp	PF01805	145 - 196	2.6e-15	Surp module
PRP21_like_P	PF12230	215 - 319	4.6e-22	Pre-mRNA splicing factor PRP21 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011594)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g24140 FvH4_7g24140 FvH4_7g24140 FvH4_7g24140
malus_domestica	MD01G1148600.v1.1 MD07G1215600.v1.1
prunus_persica	Prupe.2G247500_v2.0.a1
pyrus_communis	pycom07g19790
rosa_chinensis	RchiOBHm_Chr1g0369571
rosa_laevigata	RLG00000027118
rosa_multiflora	Rmu_sc0001154.1_g000004
rosa_roxburghii	Rroxscaffold_4G00287520
rosa_rugosa	Rorug01G0351200 Rorug01G0351300 Rorug01G0351400
rosa_samantha	Rh1AG359500 Rh1BG323200 Rh1CG336500 Rh1DG354000
rosa_wichuraiana	Rw1G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	240, 857
AccI	GTMKAC	1 cut(s)	653
AclWI	GGATC	2 cut(s)	956, 969
AcsI	RAATTY	2 cut(s)	257, 417
AcuI	CTGAAG	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	95, 611
AflIII	ACRYGT	1 cut(s)	648
AgsI	TTSAA	5 cut(s)	158, 314, 559, 591, 935
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AluBI	AGCT	5 cut(s)	35, 204, 296, 349, 467
AluI	AGCT	5 cut(s)	35, 204, 296, 349, 467
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	956, 969
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	2 cut(s)	257, 417
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	961
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	3 cut(s)	26, 385, 932
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	4 cut(s)	179, 434, 662, 997
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	2 cut(s)	96, 248
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	16, 148, 963
BmrFI	CCNGG	2 cut(s)	96, 248
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	5 cut(s)	571, 591, 685, 852, 912
BmuI	ACTGGG	1 cut(s)	451
BpmI	CTGGAG	3 cut(s)	78, 282, 704
BpuEI	CTTGAG	2 cut(s)	521, 614
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 611
Bse1I	ACTGG	2 cut(s)	299, 457
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	823, 916
BseLI	CCNNNNNNNGG	2 cut(s)	95, 611
BseMII	CTCAG	2 cut(s)	140, 830
BseNI	ACTGG	2 cut(s)	299, 457
BseRI	GAGGAG	4 cut(s)	27, 78, 81, 822
BseXI	GCAGC	1 cut(s)	745
BseYI	CCCAGC	2 cut(s)	267, 345
BshFI	GGCC	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	95, 611
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	2 cut(s)	274, 961
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	2 cut(s)	139, 831
BspLI	GGNNCC	3 cut(s)	16, 148, 963
BspPI	GGATC	2 cut(s)	956, 969
BspQI	GCTCTTC	2 cut(s)	282, 629
BsrI	ACTGG	2 cut(s)	299, 457
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	274, 961
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	4 cut(s)	400, 658, 669, 824
Bst6I	CTCTTC	5 cut(s)	282, 384, 629, 843, 912
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	126, 200, 350, 839
BstEII	GGTNACC	1 cut(s)	747
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	823, 916
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	277, 964
BstMBI	GATC	2 cut(s)	274, 961
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	2 cut(s)	556, 652
BstPI	GGTNACC	1 cut(s)	747
BstSCI	CCNGG	2 cut(s)	94, 246
BstV1I	GCAGC	1 cut(s)	745
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BsuRI	GGCC	1 cut(s)	722
BtsCI	GGATG	2 cut(s)	823, 916
BtsIMutI	CAGTG	1 cut(s)	836
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	146
CviAII	CATG	2 cut(s)	553, 649
DdeI	CTNAG	4 cut(s)	126, 200, 350, 839
DpnI	GATC	2 cut(s)	276, 963
DpnII	GATC	2 cut(s)	274, 961
Eam1104I	CTCTTC	5 cut(s)	282, 384, 629, 843, 912
EarI	CTCTTC	5 cut(s)	282, 384, 629, 843, 912
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO65I	GGTNACC	1 cut(s)	747
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	2 cut(s)	235, 586
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	556, 652
FatI	CATG	2 cut(s)	552, 648
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	653
Fnu4HI	GCNGC	1 cut(s)	759
FokI	GGATG	2 cut(s)	830, 923
Fsp4HI	GCNGC	1 cut(s)	759
FspBI	CTAG	4 cut(s)	179, 434, 662, 997
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	759
GsaI	CCCAGC	2 cut(s)	271, 349
GsuI	CTGGAG	3 cut(s)	78, 282, 704
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	556, 652
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	3 cut(s)	99, 175, 335
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	396, 654, 827
Hpy188I	TCNGA	3 cut(s)	256, 382, 471
Hpy188III	TCNNGA	4 cut(s)	179, 410, 631, 965
Hpy8I	GTNNAC	3 cut(s)	396, 654, 827
HpyAV	CCTTC	4 cut(s)	407, 605, 700, 712
HpyCH4III	ACNGT	4 cut(s)	400, 658, 669, 824
HpyCH4V	TGCA	7 cut(s)	44, 233, 363, 584, 676, 761, 925
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	4 cut(s)	126, 200, 350, 839
Hsp92II	CATG	2 cut(s)	556, 652
HspAI	GCGC	1 cut(s)	244
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	274, 961
LguI	GCTCTTC	2 cut(s)	282, 629
LmnI	GCTCC	3 cut(s)	40, 301, 320
Lsp1109I	GCAGC	1 cut(s)	745
LweI	GCATC	5 cut(s)	571, 591, 685, 852, 912
MaeI	CTAG	4 cut(s)	179, 434, 662, 997
MaeIII	GTNAC	2 cut(s)	747, 949
MalI	GATC	2 cut(s)	276, 963
MboI	GATC	2 cut(s)	274, 961
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	5 cut(s)	152, 257, 417, 762, 984
MmeI	TCCRAC	1 cut(s)	298
Mph1103I	ATGCAT	2 cut(s)	235, 586
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	777
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	96, 248
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	248
NdeII	GATC	2 cut(s)	274, 961
NlaIII	CATG	2 cut(s)	556, 652
NlaIV	GGNNCC	3 cut(s)	16, 148, 963
NsiI	ATGCAT	2 cut(s)	235, 586
NspI	RCATGY	2 cut(s)	556, 652
PciI	ACATGT	1 cut(s)	648
PciSI	GCTCTTC	2 cut(s)	282, 629
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	99, 175, 335
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	760
PscI	ACATGT	1 cut(s)	648
PsiI	TTATAA	2 cut(s)	240, 857
Psp6I	CCWGG	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	747
PspFI	CCCAGC	2 cut(s)	267, 345
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	16, 148, 963
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	961
RseI	CAYNNNNRTG	1 cut(s)	777
SapI	GCTCTTC	2 cut(s)	282, 629
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	2 cut(s)	274, 961
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	96, 248
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	5 cut(s)	571, 591, 685, 852, 912
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	2 cut(s)	536, 629
SmoI	CTYRAG	2 cut(s)	536, 629
Sse9I	AATT	5 cut(s)	152, 257, 417, 762, 984
SspMI	CTAG	4 cut(s)	179, 434, 662, 997
StyD4I	CCNGG	2 cut(s)	94, 246
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	4 cut(s)	400, 658, 669, 824
TaqI	TCGA	3 cut(s)	789, 846, 897
TasI	AATT	5 cut(s)	152, 257, 417, 762, 984
TfiI	GAWTC	3 cut(s)	99, 175, 335
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	843
TseI	GCWGC	1 cut(s)	758
TspDTI	ATGAA	2 cut(s)	300, 927
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	1 cut(s)	843
VpaK11BI	GGWCC	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	2 cut(s)	257, 417
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	2 cut(s)	556, 652
XmiI	GTMKAC	1 cut(s)	653
XspI	CTAG	4 cut(s)	179, 434, 662, 997
Zsp2I	ATGCAT	2 cut(s)	235, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.