RLG00000027118

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
8728674 .. 8730787
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027118

Sequence Viewer

Length: 1590 bp
ATGGGATCGGGGATTGTTGCTTCTGGGACTTGGCAAAGCATACAGATTCCAGTTTCTCGTTCAGTTTATAGTGCTTCTTCTAGTTCAAAGCCATCGTTTTCGATTTCTTTTTCTTCATTGGCAAAGCCTAGTGGAAGCAATGGAGGTTTGGGGCATGGGTTAGTTCATAGTTTGGTGTTTTCAGGGTCGAGTAAGTTAAAAGGTTGTAGCTTGAAGCAAACTTGTAGAGCTAGTTTTGAGGATTTCTCCTATGATGAAATGTCGGAACAGATGGAGGAATTGGCTGAGAAGTTGGAAATTTGTAGTGATAACGACGAAAATGAAGAGGAGGATACATCTTGGGTTATGTCAAAAGTTTCGAGGTCTAGGTACCCGGAAGGGGAAAAGAGGAGAGGCAATGGTTTTTCAATGCAATTTTCGAGGTTCAAGCTTAATGCTTTAGAGCCATCTCTGCTTGGGATTAATCCTGAGCCACCAGACTGGCCAGAGAGAAGTGAAATTGTTCTAGCAGATATTGCACGAAAGGCAAACAGCCTCGAGTTTCCAATGTCCCTTAGGTTGTTGAAGAAGAAGCATCAACAATGGGAAGAGAGTTCCACAGAAGTAGGGGAGTACACTGCTTTTAGCTCTTTGAACAAGGCCTTCTCTTCCATGGTGTTTATCATCCATGAGCTTCACAGCTATGCTTTAAGTATAGGGGGATGTCTGTACTGTGAAGACTTTAAGGAAATTATATCCAAGGTACAGAGAGAAATGAACTTTTCATTTGTGTGGTTGTTTCAGCATGTCTTTTCAAGGTCACCGACTCTCATGGTGTATGTGATGATCTTGTTGGCGAATTTCACGGTTTATTCAATGAATGGTAAGAATGCTGTTATTCCAGATACCACTCCTATGCCTGATGTGGCTGAGACTTTGGGTCTGTTTCTGTATGAACCGCTGGAACGACCCCGCGTGTATTGGGACGGGGAGGATGAATGTGAGCCGCGCAAAGTGAGCCCCAGTGAAAGTGAGAACAAGGATGGGGCTGGCCTTAGGTTGATCAAGTTTCCAACTGAAGAGATATTTGGTGTTTCGTCATTGAATAATGAGGAGTTGAATGTGTGGAAATCAGTGCTGGAAGAAGCTTCAAATATGCAGGCAGAATTGAGGACCGAGGATCTTGATTATGAAACTGTGCAACAATTTGTGTCACCTGTAACTGTGAATCTCGAAGCAGATGATTATGAGTGCTACTTTAAGACAGATATTTTATACCAGATGGGCTTAGCTCAGGAGCCCGATAATACACTGCTACTGTCAAACTATGCAAAATTCCTCTACCTCGTGGCTCATGATCATGACAGGGCGGAGGAGTGCTTTAGGCGAGCAGTGCAAGCTGAGAAACCTGATGCCGAGGCTTTGAGCCTATATGCAGACTTCTTGTGGTATGTAAGGAACGACATTTGGGGTGCGGAAGAGAGATACCTGCAAGCGGTGTCAGCTGAGCCCTCGAGCCCCTATTACGCCTCCAGGTATGCCCGTTTCCTTTGGCATACCGGGGGCACTGACACTTGCTACCCTCTTGAATCCTATGATAAAGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

530

Amino Acids

60.03

Weight (kDa)

4.75

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1476
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AccII CGCG 2 cut(s) 954, 988
AciI CCGC 6 cut(s) 938, 952, 986, 1349, 1454, 1475
AclWI GGATC 2 cut(s) 13, 1167
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 3 cut(s) 297, 838, 1313
AcuI CTGAAG 1 cut(s) 1077
AfaI GTAC 4 cut(s) 371, 614, 710, 744
AfiI CCNNNNNNNGG 2 cut(s) 379, 1474
AhdI GACNNNNNGTC 1 cut(s) 918
AjnI CCWGG 1 cut(s) 1511
AjuI GAANNNNNNNTTGG 2 cut(s) 1050, 1082
Alw26I GTCTC 1 cut(s) 905
AlwI GGATC 2 cut(s) 13, 1167
Ama87I CYCGRG 2 cut(s) 536, 1492
AoxI GGCC 3 cut(s) 482, 639, 1030
ApoI RAATTY 3 cut(s) 297, 838, 1313
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 501
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 990
AspS9I GGNCC 1 cut(s) 1152
AsuC2I CCSGG 2 cut(s) 374, 1540
AsuHPI GGTGA 2 cut(s) 792, 1185
AvaI CYCGRG 2 cut(s) 536, 1492
AvaII GGWCC 1 cut(s) 1152
AxyI CCTNAGG 2 cut(s) 554, 1034
BaeGI GKGCMC 1 cut(s) 1547
BalI TGGCCA 1 cut(s) 484
BanI GGYRCC 1 cut(s) 369
BanII GRGCYC 4 cut(s) 1001, 1281, 1491, 1499
BauI CACGAG 1 cut(s) 1325
BbsI GAAGAC 1 cut(s) 723
BccI CCATC 5 cut(s) 100, 265, 454, 1016, 1255
BciT130I CCWGG 1 cut(s) 1513
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 2 cut(s) 1041, 1336
BcnI CCSGG 2 cut(s) 374, 1540
BcoDI GTCTC 1 cut(s) 905
BfaI CTAG 5 cut(s) 81, 129, 231, 366, 506
BfuAI ACCTGC 1 cut(s) 1476
BfuI GTATCC 1 cut(s) 325
BisI GCNGC 1 cut(s) 986
BlpI GCTNAGC 2 cut(s) 1267, 1485
BlsI GCNGC 1 cut(s) 987
Bme1390I CCNGG 3 cut(s) 374, 1513, 1540
Bme18I GGWCC 1 cut(s) 1152
BmeRI GACNNNNNGTC 1 cut(s) 918
BmeT110I CYCGRG 2 cut(s) 536, 1492
BmgT120I GGNCC 1 cut(s) 1152
BmiI GGNNCC 2 cut(s) 371, 1278
BmrFI CCNGG 3 cut(s) 374, 1513, 1540
BmrI ACTGGG 1 cut(s) 996
BmsI GCATC 2 cut(s) 583, 1381
BmuI ACTGGG 1 cut(s) 996
BpiI GAAGAC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 1495
Bpu10I CCTNAGC 2 cut(s) 468, 1272
Bpu1102I GCTNAGC 2 cut(s) 1267, 1485
BpuMI CCSGG 2 cut(s) 374, 1540
BsaJI CCNNGG 5 cut(s) 651, 738, 1155, 1395, 1539
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 1474
Bse1I ACTGG 3 cut(s) 50, 485, 1002
Bse21I CCTNAGG 2 cut(s) 554, 1034
Bse3DI GCAATG 2 cut(s) 145, 403
BseBI CCWGG 1 cut(s) 1513
BseDI CCNNGG 5 cut(s) 651, 738, 1155, 1395, 1539
BseGI GGATG 4 cut(s) 663, 707, 979, 1027
BseLI CCNNNNNNNGG 2 cut(s) 379, 1474
BseMI GCAATG 2 cut(s) 145, 403
BseMII CTCAG 6 cut(s) 276, 459, 900, 1286, 1371, 1476
BseNI ACTGG 3 cut(s) 50, 485, 1002
BseRI GAGGAG 4 cut(s) 341, 403, 1106, 1367
BseSI GKGCMC 1 cut(s) 1547
Bsh1236I CGCG 2 cut(s) 954, 988
BshFI GGCC 3 cut(s) 484, 641, 1032
BshNI GGYRCC 1 cut(s) 369
BsiHKCI CYCGRG 2 cut(s) 536, 1492
BsiSI CCGG 2 cut(s) 374, 1539
BslFI GGGAC 3 cut(s) 40, 535, 977
BslI CCNNNNNNNGG 2 cut(s) 379, 1474
BsmAI GTCTC 1 cut(s) 905
BsmFI GGGAC 3 cut(s) 40, 535, 977
BsmI GAATGC 1 cut(s) 874
BsnI GGCC 3 cut(s) 484, 641, 1032
BsoBI CYCGRG 2 cut(s) 536, 1492
Bsp1286I GDGCHC 5 cut(s) 1001, 1281, 1491, 1499, 1547
Bsp143I GATC 5 cut(s) 5, 825, 1041, 1159, 1336
Bsp1720I GCTNAGC 2 cut(s) 1267, 1485
Bsp19I CCATGG 1 cut(s) 651
BspACI CCGC 6 cut(s) 938, 952, 986, 1349, 1454, 1475
BspANI GGCC 3 cut(s) 484, 641, 1032
BspCNI CTCAG 6 cut(s) 277, 460, 901, 1285, 1372, 1477
BspFNI CGCG 2 cut(s) 954, 988
BspHI TCATGA 2 cut(s) 1333, 1339
BspLI GGNNCC 2 cut(s) 371, 1278
BspMI ACCTGC 1 cut(s) 1476
BspPI GGATC 2 cut(s) 13, 1167
BspT107I GGYRCC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 145, 403
BsrI ACTGG 3 cut(s) 50, 485, 1002
BssECI CCNNGG 5 cut(s) 651, 738, 1155, 1395, 1539
BssMI GATC 5 cut(s) 5, 825, 1041, 1159, 1336
BssSI CACGAG 1 cut(s) 1325
BssT1I CCWWGG 2 cut(s) 651, 738
Bst2BI CACGAG 1 cut(s) 1325
Bst2UI CCWGG 1 cut(s) 1513
Bst4CI ACNGT 5 cut(s) 713, 847, 1177, 1204, 1299
Bst6I CTCTTC 5 cut(s) 318, 582, 652, 1053, 1452
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 1030, 1140, 1368, 1377, 1473
BstDEI CTNAG 9 cut(s) 285, 468, 554, 909, 1034, 1267, 1272, 1380, 1485
BstDSI CCRYGG 1 cut(s) 651
BstEII GGTNACC 1 cut(s) 798
BstF5I GGATG 4 cut(s) 663, 707, 979, 1027
BstFNI CGCG 2 cut(s) 954, 988
BstHHI GCGC 1 cut(s) 990
BstKTI GATC 5 cut(s) 8, 828, 1044, 1162, 1339
BstMAI GTCTC 1 cut(s) 905
BstMBI GATC 5 cut(s) 5, 825, 1041, 1159, 1336
BstMWI GCNNNNNNNGC 7 cut(s) 451, 515, 524, 996, 1372, 1376, 1481
BstNI CCWGG 1 cut(s) 1513
BstNSI RCATGY 1 cut(s) 788
BstPI GGTNACC 1 cut(s) 798
BstSCI CCNGG 3 cut(s) 372, 1511, 1538
BstSLI GKGCMC 1 cut(s) 1547
BstUI CGCG 2 cut(s) 954, 988
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 1159
BstXI CCANNNNNNTGG 1 cut(s) 480
BstYI RGATCY 1 cut(s) 1159
Bsu36I CCTNAGG 2 cut(s) 554, 1034
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 3 cut(s) 484, 641, 1032
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 4 cut(s) 663, 707, 979, 1027
BtsI GCAGTG 3 cut(s) 615, 1289, 1377
BtsIMutI CAGTG 6 cut(s) 615, 1009, 1119, 1289, 1377, 1545
BveI ACCTGC 1 cut(s) 1476
Cac8I GCNNGC 5 cut(s) 1030, 1140, 1368, 1377, 1473
CciI TCATGA 2 cut(s) 1333, 1339
CfoI GCGC 1 cut(s) 990
Cfr13I GGNCC 1 cut(s) 1152
Csp6I GTAC 4 cut(s) 370, 613, 709, 743
CviAII CATG 7 cut(s) 155, 652, 668, 785, 811, 1334, 1340
CviQI GTAC 4 cut(s) 370, 613, 709, 743
DdeI CTNAG 9 cut(s) 285, 468, 554, 909, 1034, 1267, 1272, 1380, 1485
DpnI GATC 5 cut(s) 7, 827, 1043, 1161, 1338
DpnII GATC 5 cut(s) 5, 825, 1041, 1159, 1336
DriI GACNNNNNGTC 1 cut(s) 918
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 5 cut(s) 318, 582, 652, 1053, 1452
Eam1105I GACNNNNNGTC 1 cut(s) 918
EarI CTCTTC 5 cut(s) 318, 582, 652, 1053, 1452
EciI GGCGGA 1 cut(s) 1364
Eco130I CCWWGG 2 cut(s) 651, 738
Eco147I AGGCCT 1 cut(s) 641
Eco24I GRGCYC 4 cut(s) 1001, 1281, 1491, 1499
Eco47I GGWCC 1 cut(s) 1152
Eco57I CTGAAG 1 cut(s) 1077
Eco81I CCTNAGG 2 cut(s) 554, 1034
Eco88I CYCGRG 2 cut(s) 536, 1492
Eco91I GGTNACC 1 cut(s) 798
EcoO65I GGTNACC 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 1511
EcoT14I CCWWGG 2 cut(s) 651, 738
EcoT38I GRGCYC 4 cut(s) 1001, 1281, 1491, 1499
ErhI CCWWGG 2 cut(s) 651, 738
FaeI CATG 7 cut(s) 158, 655, 671, 788, 814, 1337, 1343
FaqI GGGAC 3 cut(s) 40, 535, 977
FatI CATG 7 cut(s) 154, 651, 667, 784, 810, 1333, 1339
FauI CCCGC 1 cut(s) 959
FbaI TGATCA 2 cut(s) 1041, 1336
Fnu4HI GCNGC 1 cut(s) 986
FokI GGATG 4 cut(s) 650, 714, 986, 1034
FriOI GRGCYC 4 cut(s) 1001, 1281, 1491, 1499
Fsp4HI GCNGC 1 cut(s) 986
FspBI CTAG 5 cut(s) 81, 129, 231, 366, 506
GlaI GCGC 1 cut(s) 989
GluI GCNGC 1 cut(s) 986
GsuI CTGGAG 1 cut(s) 1495
HaeIII GGCC 3 cut(s) 484, 641, 1032
HapII CCGG 2 cut(s) 374, 1539
HhaI GCGC 1 cut(s) 990
Hin1II CATG 7 cut(s) 158, 655, 671, 788, 814, 1337, 1343
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HindIII AAGCTT 2 cut(s) 428, 1125
HinfI GANTC 4 cut(s) 46, 805, 1207, 1568
HpaII CCGG 2 cut(s) 374, 1539
HphI GGTGA 2 cut(s) 792, 1185
Hpy166II GTNNAC 1 cut(s) 615
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 8 cut(s) 467, 881, 1163, 1211, 1274, 1334, 1340, 1565
Hpy8I GTNNAC 1 cut(s) 615
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 371, 652
HpyCH4III ACNGT 5 cut(s) 713, 847, 1177, 1204, 1299
HpyCH4V TGCA 8 cut(s) 412, 518, 1138, 1180, 1310, 1375, 1415, 1471
HpyF10VI GCNNNNNNNGC 7 cut(s) 451, 515, 524, 996, 1372, 1376, 1481
HpyF3I CTNAG 9 cut(s) 285, 468, 554, 909, 1034, 1267, 1272, 1380, 1485
Hsp92II CATG 7 cut(s) 158, 655, 671, 788, 814, 1337, 1343
HspAI GCGC 1 cut(s) 988
KpnI GGTACC 1 cut(s) 373
Ksp22I TGATCA 2 cut(s) 1041, 1336
Kzo9I GATC 5 cut(s) 5, 825, 1041, 1159, 1336
LmnI GCTCC 1 cut(s) 1276
LweI GCATC 2 cut(s) 583, 1381
MaeI CTAG 5 cut(s) 81, 129, 231, 366, 506
MaeIII GTNAC 3 cut(s) 798, 1191, 1198
MalI GATC 5 cut(s) 7, 827, 1043, 1161, 1338
MboI GATC 5 cut(s) 5, 825, 1041, 1159, 1336
MflI RGATCY 1 cut(s) 1159
MhlI GDGCHC 5 cut(s) 1001, 1281, 1491, 1499, 1547
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 9 cut(s) 278, 297, 413, 498, 729, 838, 1145, 1184, 1313
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 3 cut(s) 243, 273, 1076
Mox20I TGGCCA 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 484
MseI TTAA 6 cut(s) 197, 432, 462, 689, 723, 1239
MslI CAYNNNNRTG 4 cut(s) 681, 769, 893, 1338
Msp20I TGGCCA 1 cut(s) 484
MspA1I CMGCKG 2 cut(s) 940, 1484
MspI CCGG 2 cut(s) 374, 1539
MspR9I CCNGG 3 cut(s) 374, 1513, 1540
Mva1269I GAATGC 1 cut(s) 874
MvaI CCWGG 1 cut(s) 1513
MvnI CGCG 2 cut(s) 954, 988
MwoI GCNNNNNNNGC 7 cut(s) 451, 515, 524, 996, 1372, 1376, 1481
NciI CCSGG 2 cut(s) 374, 1540
NcoI CCATGG 1 cut(s) 651
NdeII GATC 5 cut(s) 5, 825, 1041, 1159, 1336
NlaIII CATG 7 cut(s) 158, 655, 671, 788, 814, 1337, 1343
NlaIV GGNNCC 2 cut(s) 371, 1278
NmeAIII GCCGAG 1 cut(s) 1420
NmuCI GTSAC 2 cut(s) 798, 1191
NspI RCATGY 1 cut(s) 788
PaeR7I CTCGAG 2 cut(s) 536, 1492
PagI TCATGA 2 cut(s) 1333, 1339
PceI AGGCCT 1 cut(s) 641
PctI GAATGC 1 cut(s) 874
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 3 cut(s) 46, 1207, 1568
PkrI GCNGC 1 cut(s) 987
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
PshBI ATTAAT 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 1511
PspEI GGTNACC 1 cut(s) 798
PspGI CCWGG 1 cut(s) 1511
PspN4I GGNNCC 2 cut(s) 371, 1278
PspPI GGNCC 1 cut(s) 1152
PspXI VCTCGAGB 2 cut(s) 536, 1492
PsuI RGATCY 1 cut(s) 1159
PvuII CAGCTG 1 cut(s) 1484
RsaI GTAC 4 cut(s) 371, 614, 710, 744
RsaNI GTAC 4 cut(s) 370, 613, 709, 743
RseI CAYNNNNRTG 4 cut(s) 681, 769, 893, 1338
SaqAI TTAA 6 cut(s) 197, 432, 462, 689, 723, 1239
SatI GCNGC 1 cut(s) 986
Sau3AI GATC 5 cut(s) 5, 825, 1041, 1159, 1336
Sau96I GGNCC 1 cut(s) 1152
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 3 cut(s) 374, 1513, 1540
SduI GDGCHC 5 cut(s) 1001, 1281, 1491, 1499, 1547
SfaNI GCATC 2 cut(s) 583, 1381
Sfr274I CTCGAG 2 cut(s) 536, 1492
SinI GGWCC 1 cut(s) 1152
SlaI CTCGAG 2 cut(s) 536, 1492
SmiMI CAYNNNNRTG 4 cut(s) 681, 769, 893, 1338
SmlI CTYRAG 2 cut(s) 536, 1492
SmoI CTYRAG 2 cut(s) 536, 1492
Sse9I AATT 9 cut(s) 278, 297, 413, 498, 729, 838, 1145, 1184, 1313
SseBI AGGCCT 1 cut(s) 641
SsiI CCGC 6 cut(s) 938, 952, 986, 1349, 1454, 1475
SspMI CTAG 5 cut(s) 81, 129, 231, 366, 506
StuI AGGCCT 1 cut(s) 641
StyD4I CCNGG 3 cut(s) 372, 1511, 1538
StyI CCWWGG 2 cut(s) 651, 738
TaaI ACNGT 5 cut(s) 713, 847, 1177, 1204, 1299
TaqI TCGA 7 cut(s) 101, 188, 359, 419, 537, 1212, 1493
TaqII GACCGA 1 cut(s) 1169
TasI AATT 9 cut(s) 278, 297, 413, 498, 729, 838, 1145, 1184, 1313
TatI WGTACW 2 cut(s) 612, 708
TauI GCSGC 1 cut(s) 988
TfiI GAWTC 3 cut(s) 46, 1207, 1568
Tru1I TTAA 6 cut(s) 197, 432, 462, 689, 723, 1239
Tru9I TTAA 6 cut(s) 197, 432, 462, 689, 723, 1239
TscAI CASTG 6 cut(s) 622, 1009, 1119, 1296, 1377, 1552
TseFI GTSAC 2 cut(s) 798, 1191
Tsp45I GTSAC 2 cut(s) 798, 1191
TspRI CASTG 6 cut(s) 622, 1009, 1119, 1296, 1377, 1552
VpaK11BI GGWCC 1 cut(s) 1152
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 3 cut(s) 297, 838, 1313
XceI RCATGY 1 cut(s) 788
XhoI CTCGAG 2 cut(s) 536, 1492
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 5 cut(s) 81, 129, 231, 366, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.