Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Forward (+)

32632191 .. 32633767

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1260400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTGGCAGCGCACGGACCTGGACATCAATGATGTTCAATTAATTATCCAGTGTGAACCCCCACGTGATGTAGAAGATTATATCCATCGATCTGGACTCTCGGGGAGAGCAGGCAATTCTGGAGTTGCTGTCATGCTTTATGATCCCAGAATGTCAAATTTTTCTAAAATCGAGTTAGAGTCGGGGGTGAAATTTGAATACATATCTGCTCCTCAGCCACTTAATATGGCCAAGGCAGTAGTAGGTCATGATGCAACCAAAATCTCTGATAGTGTAATTCCTGCTTTCAAGCCGGTTGCCAAAGAGCTACTTAATACCTCTGGCCTATCTGCAGTAGATCTACTGGCAAAAGCACTTGCTAAAGCTGCTGGTTACACCGAGATAAAGAAGTCACAGTACTTCTTGAGGCTGGAAAGCCCATTTATTCACCGTCCACTAGCTAATAGTGGGAACAATATTGATTGTGTTCTGAAGGAGTCACATTGTGCTTTGTCATTCCAAGAAATTATGAGCTGTTTAAATATAGATATCCCTTTTGCTTCTGGGGTCTTGAGGAGATACTTGCCCGAGGAGAAGGTGGAGTCAGTGAAGGGTATGGCACTAACAGCTGATGGAAATGGTGCAGTCTTTTATGTGGCAGCTGAAGATTTGGATTTGTTTCTTGCTGGTCAGGAAAATGCAGCTAATGTGAGTGTAACGGTGTTGAAATCACTGCCTGATTTACAAGAAAAAGAATCAAGGAATACAAGATTTGGCGGGGGTCATGAAGGAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

260

Amino Acids

28.22

Weight (kDa)

5.32

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DD_DDX21-DDX50	PF26142	86 - 121	1.1e-12	DDX21/DDX50 dimerisation domain
GUCT	PF08152	176 - 242	8.4e-14	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	756
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	2 cut(s)	157, 191
AcuI	CTGAAG	2 cut(s)	491, 663
AcvI	CACGTG	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	38, 197, 289, 706
AjnI	CCWGG	1 cut(s)	18
AluBI	AGCT	7 cut(s)	307, 365, 440, 513, 608, 641, 683
AluI	AGCT	7 cut(s)	307, 365, 440, 513, 608, 641, 683
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	2 cut(s)	100, 566
AoxI	GGCC	2 cut(s)	228, 322
ApeKI	GCWGC	4 cut(s)	7, 365, 638, 680
ApoI	RAATTY	2 cut(s)	157, 191
AseI	ATTAAT	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	199, 419
AvaI	CYCGRG	2 cut(s)	100, 566
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
BbrPI	CACGTG	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	4 cut(s)	19, 352, 650, 692
BccI	CCATC	2 cut(s)	93, 605
BciT130I	CCWGG	1 cut(s)	20
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	330
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	4 cut(s)	8, 366, 639, 681
BlsI	GCNGC	4 cut(s)	9, 367, 640, 682
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	2 cut(s)	100, 566
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	2 cut(s)	424, 571
Bsa29I	ATCGAT	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	231, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	49, 348
BseBI	CCWGG	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	231, 567
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	49, 348
BseRI	GAGGAG	3 cut(s)	201, 568, 584
BseXI	GCAGC	4 cut(s)	19, 352, 650, 692
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	2 cut(s)	230, 324
BshVI	ATCGAT	1 cut(s)	88
BsiHKCI	CYCGRG	2 cut(s)	100, 566
BsiSI	CCGG	1 cut(s)	293
BsnI	GGCC	2 cut(s)	230, 324
BsoBI	CYCGRG	2 cut(s)	100, 566
Bsp143I	GATC	3 cut(s)	89, 142, 337
BspACI	CCGC	1 cut(s)	756
BspANI	GGCC	2 cut(s)	230, 324
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	88
BspHI	TCATGA	2 cut(s)	247, 763
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	49, 348
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	231, 567
BssMI	GATC	3 cut(s)	89, 142, 337
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	20
Bst4CI	ACNGT	3 cut(s)	396, 431, 700
BstBAI	YACGTR	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	3 cut(s)	92, 145, 340
BstMBI	GATC	3 cut(s)	89, 142, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 605
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	19, 352, 650, 692
BstX2I	RGATCY	1 cut(s)	337
BstXI	CCANNNNNNTGG	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	337
Bsu15I	ATCGAT	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	230, 324
BsuTUI	ATCGAT	1 cut(s)	88
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	3 cut(s)	56, 591, 710
Cac8I	GCNNGC	1 cut(s)	112
CciI	TCATGA	2 cut(s)	247, 763
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	133, 248, 764
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	91, 144, 339
DpnII	GATC	3 cut(s)	89, 142, 337
DraI	TTTAAA	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	491, 663
Eco72I	CACGTG	1 cut(s)	65
Eco88I	CYCGRG	2 cut(s)	100, 566
EcoRII	CCWGG	1 cut(s)	18
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	136, 251, 767
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	132, 247, 763
FauI	CCCGC	1 cut(s)	749
Fnu4HI	GCNGC	4 cut(s)	8, 366, 639, 681
Fsp4HI	GCNGC	4 cut(s)	8, 366, 639, 681
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	4 cut(s)	8, 366, 639, 681
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	230, 324
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	136, 251, 767
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	5 cut(s)	96, 179, 476, 581, 734
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	199, 419
Hpy166II	GTNNAC	2 cut(s)	56, 434
Hpy188I	TCNGA	2 cut(s)	268, 471
Hpy188III	TCNNGA	7 cut(s)	93, 120, 248, 403, 550, 671, 764
Hpy8I	GTNNAC	2 cut(s)	56, 434
HpyAV	CCTTC	4 cut(s)	466, 568, 583, 761
HpyCH4III	ACNGT	3 cut(s)	396, 431, 700
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	4 cut(s)	254, 332, 623, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 605
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	136, 251, 767
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	89, 142, 337
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	4 cut(s)	19, 352, 650, 692
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	4 cut(s)	371, 390, 477, 694
MalI	GATC	3 cut(s)	91, 144, 339
MboI	GATC	3 cut(s)	89, 142, 337
MboII	GAAGA	2 cut(s)	86, 656
MflI	RGATCY	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	230
MluCI	AATT	7 cut(s)	38, 42, 115, 157, 191, 276, 504
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	4 cut(s)	90, 188, 485, 590
MnlI	CCTC	6 cut(s)	222, 328, 399, 546, 562, 764
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	4 cut(s)	41, 222, 312, 518
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	608, 641
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	365, 605
NdeII	GATC	3 cut(s)	89, 142, 337
NlaIII	CATG	3 cut(s)	136, 251, 767
NmuCI	GTSAC	2 cut(s)	390, 477
PagI	TCATGA	2 cut(s)	247, 763
PfeI	GAWTC	1 cut(s)	734
PkrI	GCNGC	4 cut(s)	9, 367, 640, 682
PleI	GAGTC	4 cut(s)	90, 187, 484, 589
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	4 cut(s)	90, 187, 484, 589
Ppu21I	YACGTR	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	18
PspCI	CACGTG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	2 cut(s)	608, 641
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	4 cut(s)	41, 222, 312, 518
SatI	GCNGC	4 cut(s)	8, 366, 639, 681
Sau3AI	GATC	3 cut(s)	89, 142, 337
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	4 cut(s)	90, 188, 485, 590
ScrFI	CCNGG	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	403, 550
SmoI	CTYRAG	2 cut(s)	403, 550
Sse9I	AATT	7 cut(s)	38, 42, 115, 157, 191, 276, 504
SsiI	CCGC	1 cut(s)	756
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	396, 431, 700
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	88, 171
TasI	AATT	7 cut(s)	38, 42, 115, 157, 191, 276, 504
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	734
Tru1I	TTAA	4 cut(s)	41, 222, 312, 518
Tru9I	TTAA	4 cut(s)	41, 222, 312, 518
TscAI	CASTG	3 cut(s)	56, 591, 717
TseFI	GTSAC	2 cut(s)	390, 477
TseI	GCWGC	4 cut(s)	7, 365, 638, 680
Tsp45I	GTSAC	2 cut(s)	390, 477
TspDTI	ATGAA	1 cut(s)	780
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	3 cut(s)	56, 591, 717
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	2 cut(s)	157, 191
XspI	CTAG	1 cut(s)	437
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.