Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Forward (+)

18458194 .. 18460313

Gene Structure 2120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19980.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCTTGCTCCAGTTCAGCAAGATCAGAACTTATTCCTGATATCATACGTTGCTACAGCAGTGGAGGCCGCACAATCATTTTCACTGAGACAAAGGAAGCTGCTTCTGGACTTGCTGAGGCGCTGCCTGGAGCCCGGGCTTTGCATGGGGACATACAGCAGGGCCAACGTGAGGTCACGCTTGCTGGTTTCAGGTCTGGCAAGTTTATGACATTAGTAGCCACGAATGTGGCAGCGCGTGGACTGGATATCAATGATGTTCAATTAATTATTCAGTGTGAACCCCCACGTGATGTAGAAGACTATATTCATCGATCTGGACGCACAGGGAGAGCAGGCAATTCTGGAGTTGCAGTCATGCTTTATGATCCCAGAAGGTCAAATTTTTCAAAAATCGAGAGAGAGTCGGGGGTGAAATTTGAACACATTTCTGCTCCTCAGCCACTTGATATTGCCAAAGCAGTTGGTCAAGATGCAGCAGAAATGATAACCAAAATCTCTGACAGTGTAATTCCTGCTTTCAAGTCTGTTGCCGAGGAGCTACTTAACACCTCTGGCCTATCTGCAGTAGATCTACTGGCAAAAGCACTTGCTAAAGCTGCTGGCTACACCGAGATAAAGAAGAGGTCACTTCTTAGCTCTATGGAAAACCATGTCACAGTACTTCTCGAGGCTGGAAAGCCCATTTATTCACCGTCTTTTGCTTTTGGGGTCTTGAGGAGATTCTTGCCAGAGGAGAAGGTTGAGTCAGTGAAGGGTATGGCACTAACAGCTGATGGAAATGGTGCAGTGTTTGATGTAGCAGCTGAAGATTTGGATTTGTTTCTTGCTGGTCAGGAAAATGCAGCTAATGTGAGCATAGAGGTGTTGAAATCACTGCCTGATTTACAAGAAAAAGAATCAAGGAATTCAAGATTTGGCGGTGGTGGAAGGTTTGGCCGTGGTGGTGGAGGTGGAGGTTTTCGAAATGATAGGTATTCCAACAACCGATCCAGTGGTGGTGGGAGGGGTCGCGGCAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

354

Amino Acids

37.74

Weight (kDa)

8.9

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	271, 1047
AciI	CCGC	3 cut(s)	103, 954, 1047
AclWI	GGATC	2 cut(s)	395, 1017
AcoI	YGGCCR	1 cut(s)	970
AcsI	RAATTY	3 cut(s)	415, 449, 940
AcuI	CTGAAG	1 cut(s)	861
AcvI	CACGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	696
AfiI	CCNNNNNNNGG	2 cut(s)	21, 205
AgsI	TTSAA	6 cut(s)	296, 423, 455, 556, 904, 945
AjnI	CCWGG	1 cut(s)	160
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	7 cut(s)	134, 574, 632, 672, 806, 839, 881
AluI	AGCT	7 cut(s)	134, 574, 632, 672, 806, 839, 881
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	395, 1017
Ama87I	CYCGRG	2 cut(s)	168, 701
AoxI	GGCC	5 cut(s)	6, 100, 196, 589, 970
ApeKI	GCWGC	7 cut(s)	134, 157, 266, 509, 632, 836, 878
ApoI	RAATTY	3 cut(s)	415, 449, 940
AseI	ATTAAT	1 cut(s)	299
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	2 cut(s)	157, 271
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	2 cut(s)	169, 170
AsuHPI	GGTGA	2 cut(s)	457, 717
AsuII	TTCGAA	1 cut(s)	997
AvaI	CYCGRG	2 cut(s)	168, 701
BanII	GRGCYC	1 cut(s)	169
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	339
BbvCI	CCTCAGC	2 cut(s)	150, 471
BbvI	GCAGC	7 cut(s)	121, 144, 278, 521, 619, 848, 890
BccI	CCATC	2 cut(s)	803, 1050
BceAI	ACGGC	1 cut(s)	957
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	2 cut(s)	169, 170
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	88, 597
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	9 cut(s)	103, 135, 158, 267, 510, 633, 837, 879, 1048
BlsI	GCNGC	9 cut(s)	104, 136, 159, 268, 511, 634, 838, 880, 1049
BmcAI	AGTACT	1 cut(s)	696
Bme1390I	CCNGG	3 cut(s)	162, 169, 170
BmeT110I	CYCGRG	2 cut(s)	168, 701
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	3 cut(s)	162, 169, 170
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	3 cut(s)	28, 183, 399
Bpu10I	CCTNAGC	2 cut(s)	150, 471
Bpu14I	TTCGAA	1 cut(s)	997
BpuEI	CTTGAG	1 cut(s)	769
BpuMI	CCSGG	2 cut(s)	169, 170
Bsa29I	ATCGAT	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	168, 567, 973
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 205
Bse1I	ACTGG	4 cut(s)	45, 282, 615, 1026
BseBI	CCWGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	346
BseDI	CCNNGG	3 cut(s)	168, 567, 973
BseLI	CCNNNNNNNGG	2 cut(s)	21, 205
BseMII	CTCAG	3 cut(s)	111, 141, 485
BseNI	ACTGG	4 cut(s)	45, 282, 615, 1026
BseRI	GAGGAG	4 cut(s)	459, 584, 766, 782
BseXI	GCAGC	7 cut(s)	121, 144, 278, 521, 619, 848, 890
BsgI	GTGCAG	1 cut(s)	840
Bsh1236I	CGCG	2 cut(s)	271, 1047
BshFI	GGCC	5 cut(s)	8, 102, 198, 591, 972
BshVI	ATCGAT	1 cut(s)	346
BsiHKCI	CYCGRG	2 cut(s)	168, 701
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	21, 205
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	5 cut(s)	8, 102, 198, 591, 972
BsoBI	CYCGRG	2 cut(s)	168, 701
Bsp119I	TTCGAA	1 cut(s)	997
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	5 cut(s)	56, 347, 400, 604, 1022
BspACI	CCGC	3 cut(s)	103, 954, 1047
BspANI	GGCC	5 cut(s)	8, 102, 198, 591, 972
BspCNI	CTCAG	3 cut(s)	112, 142, 484
BspDI	ATCGAT	1 cut(s)	346
BspFNI	CGCG	2 cut(s)	271, 1047
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	2 cut(s)	395, 1017
BspT104I	TTCGAA	1 cut(s)	997
BsrI	ACTGG	4 cut(s)	45, 282, 615, 1026
BssECI	CCNNGG	3 cut(s)	168, 567, 973
BssMI	GATC	5 cut(s)	56, 347, 400, 604, 1022
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	539, 694, 729
Bst6I	CTCTTC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	997
BstC8I	GCNNGC	4 cut(s)	10, 216, 370, 637
BstDEI	CTNAG	4 cut(s)	120, 150, 471, 668
BstDSI	CCRYGG	1 cut(s)	973
BstFNI	CGCG	2 cut(s)	271, 1047
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 271
BstKTI	GATC	5 cut(s)	59, 350, 403, 607, 1025
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	56, 347, 400, 604, 1022
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 632, 803
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	3 cut(s)	160, 167, 168
BstSFI	CTRYAG	2 cut(s)	88, 597
BstUI	CGCG	2 cut(s)	271, 1047
BstV1I	GCAGC	7 cut(s)	121, 144, 278, 521, 619, 848, 890
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	5 cut(s)	8, 102, 198, 591, 972
BsuTUI	ATCGAT	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	973
BtsI	GCAGTG	3 cut(s)	100, 828, 908
BtsIMutI	CAGTG	8 cut(s)	100, 117, 314, 544, 789, 828, 908, 1033
Cac8I	GCNNGC	4 cut(s)	10, 216, 370, 637
CfoI	GCGC	2 cut(s)	157, 271
Cfr13I	GGNCC	1 cut(s)	196
Cfr9I	CCCGGG	1 cut(s)	168
ClaI	ATCGAT	1 cut(s)	346
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	695
CviAII	CATG	3 cut(s)	179, 391, 686
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	4 cut(s)	120, 150, 471, 668
DpnI	GATC	5 cut(s)	58, 349, 402, 606, 1024
DpnII	GATC	5 cut(s)	56, 347, 400, 604, 1022
EaeI	YGGCCR	1 cut(s)	970
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	169
Eco32I	GATATC	2 cut(s)	76, 283
Eco57I	CTGAAG	1 cut(s)	861
Eco72I	CACGTG	1 cut(s)	323
Eco88I	CYCGRG	2 cut(s)	168, 701
EcoRI	GAATTC	1 cut(s)	940
EcoRII	CCWGG	1 cut(s)	160
EcoRV	GATATC	2 cut(s)	76, 283
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	3 cut(s)	182, 394, 689
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	178, 390, 685
Fnu4HI	GCNGC	9 cut(s)	103, 135, 158, 267, 510, 633, 837, 879, 1048
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	9 cut(s)	103, 135, 158, 267, 510, 633, 837, 879, 1048
GlaI	GCGC	2 cut(s)	156, 270
GluI	GCNGC	9 cut(s)	103, 135, 158, 267, 510, 633, 837, 879, 1048
GsuI	CTGGAG	3 cut(s)	28, 183, 399
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	5 cut(s)	8, 102, 198, 591, 972
HapII	CCGG	1 cut(s)	169
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	2 cut(s)	157, 271
Hin1II	CATG	3 cut(s)	182, 394, 689
Hin6I	GCGC	2 cut(s)	155, 269
HinP1I	GCGC	2 cut(s)	155, 269
HinfI	GANTC	4 cut(s)	437, 756, 779, 932
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	2 cut(s)	457, 717
Hpy166II	GTNNAC	2 cut(s)	275, 314
Hpy188I	TCNGA	2 cut(s)	61, 535
Hpy8I	GTNNAC	2 cut(s)	275, 314
HpyAV	CCTTC	4 cut(s)	402, 766, 781, 957
HpyCH4III	ACNGT	3 cut(s)	539, 694, 729
HpyCH4IV	ACGT	3 cut(s)	82, 202, 322
HpyCH4V	TGCA	6 cut(s)	178, 386, 509, 599, 821, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 632, 803
HpyF3I	CTNAG	4 cut(s)	120, 150, 471, 668
HpySE526I	ACGT	3 cut(s)	82, 202, 322
Hsp92II	CATG	3 cut(s)	182, 394, 689
HspAI	GCGC	2 cut(s)	155, 269
Kzo9I	GATC	5 cut(s)	56, 347, 400, 604, 1022
LmnI	GCTCC	4 cut(s)	47, 164, 472, 571
Lsp1109I	GCAGC	7 cut(s)	121, 144, 278, 521, 619, 848, 890
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	3 cut(s)	82, 202, 322
MaeIII	GTNAC	3 cut(s)	208, 660, 688
MalI	GATC	5 cut(s)	58, 349, 402, 606, 1024
MboI	GATC	5 cut(s)	56, 347, 400, 604, 1022
MboII	GAAGA	4 cut(s)	26, 344, 667, 854
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	7 cut(s)	296, 300, 373, 415, 449, 543, 940
MlyI	GAGTC	2 cut(s)	446, 788
MmeI	TCCRAC	1 cut(s)	1038
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	299, 579
MslI	CAYNNNNRTG	2 cut(s)	260, 896
MspA1I	CMGCKG	2 cut(s)	806, 839
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	3 cut(s)	162, 169, 170
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	2 cut(s)	271, 1047
MwoI	GCNNNNNNNGC	3 cut(s)	99, 632, 803
NciI	CCSGG	2 cut(s)	169, 170
NdeII	GATC	5 cut(s)	56, 347, 400, 604, 1022
NlaIII	CATG	3 cut(s)	182, 394, 689
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	592
NmuCI	GTSAC	3 cut(s)	208, 660, 688
NspV	TTCGAA	1 cut(s)	997
OliI	CACNNNNGTG	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	756, 932
PkrI	GCNGC	9 cut(s)	104, 136, 159, 268, 511, 634, 838, 880, 1049
PleI	GAGTC	2 cut(s)	445, 787
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	2 cut(s)	445, 787
Ppu21I	YACGTR	1 cut(s)	323
PshBI	ATTAAT	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	604
PvuII	CAGCTG	2 cut(s)	806, 839
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
RseI	CAYNNNNRTG	2 cut(s)	260, 896
SaqAI	TTAA	2 cut(s)	299, 579
SatI	GCNGC	9 cut(s)	103, 135, 158, 267, 510, 633, 837, 879, 1048
Sau3AI	GATC	5 cut(s)	56, 347, 400, 604, 1022
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	696
SchI	GAGTC	2 cut(s)	446, 788
ScrFI	CCNGG	3 cut(s)	162, 169, 170
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	2 cut(s)	88, 597
Sfr274I	CTCGAG	1 cut(s)	701
SfuI	TTCGAA	1 cut(s)	997
SlaI	CTCGAG	1 cut(s)	701
SmaI	CCCGGG	1 cut(s)	170
SmiMI	CAYNNNNRTG	2 cut(s)	260, 896
SmlI	CTYRAG	2 cut(s)	701, 748
SmoI	CTYRAG	2 cut(s)	701, 748
SrfI	GCCCGGGC	1 cut(s)	170
Sse9I	AATT	7 cut(s)	296, 300, 373, 415, 449, 543, 940
SsiI	CCGC	3 cut(s)	103, 954, 1047
StyD4I	CCNGG	3 cut(s)	160, 167, 168
TaaI	ACNGT	3 cut(s)	539, 694, 729
TaiI	ACGT	3 cut(s)	85, 205, 325
TaqI	TCGA	4 cut(s)	346, 429, 702, 997
TasI	AATT	7 cut(s)	296, 300, 373, 415, 449, 543, 940
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	2 cut(s)	105, 1050
TfiI	GAWTC	2 cut(s)	756, 932
Tru1I	TTAA	2 cut(s)	299, 579
Tru9I	TTAA	2 cut(s)	299, 579
TscAI	CASTG	8 cut(s)	100, 124, 314, 544, 789, 828, 915, 1033
TseFI	GTSAC	3 cut(s)	208, 660, 688
TseI	GCWGC	7 cut(s)	134, 157, 266, 509, 632, 836, 878
Tsp45I	GTSAC	3 cut(s)	208, 660, 688
TspDTI	ATGAA	2 cut(s)	17, 332
TspMI	CCCGGG	1 cut(s)	168
TspRI	CASTG	8 cut(s)	100, 124, 314, 544, 789, 828, 915, 1033
VspI	ATTAAT	1 cut(s)	299
XapI	RAATTY	3 cut(s)	415, 449, 940
XhoI	CTCGAG	1 cut(s)	701
XmaI	CCCGGG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.