Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Reverse (-)

4757110 .. 4758197

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026666

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTGGCTCGAGCTAACATCATGGAAGAGGCACTAGCTATATATCAGGACTTTTGCTTATTCGGCCTTGTGGAGGTTCTTGCCGGAAGAGAAGGTCGAGTCAGTGAAGGGTATATATGGCGCCAACAACTGATGGAAAGGGTGCAGTTTGATGTAGCTGCTGAAGATTTGGATATGTTTCTTACTAATACTAAATACCTGTTTTCTTTCTTTAACTCATTTGTTGATTTTCTCGTGGATATTCACCAAGCAGCTTTGTGTTCAGGTTCGCAAAATGCAGCTGGTATCAGCATACAGGTCTTGGACTCTTTGCCGAGTTTACAAGAAAAAGAAGCAAGGAGAGGAAGATTTGGCGGTGGTGGCCGTGGTGGTAGTAGGTTTGGTGGAAGAGGAGGTGGCAGGGGTGGTGGTGGTTTCTCTAATGGAAGAAATGATAGGTTTGGTGGCCGCGGCAATTACAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

157

Amino Acids

17.16

Weight (kDa)

7.8

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	120
AccII	CGCG	1 cut(s)	450
AciI	CCGC	3 cut(s)	354, 448, 450
AcoI	YGGCCR	2 cut(s)	361, 445
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	73
AluBI	AGCT	5 cut(s)	14, 38, 158, 254, 281
AluI	AGCT	5 cut(s)	14, 38, 158, 254, 281
Ama87I	CYCGRG	1 cut(s)	9
AoxI	GGCC	3 cut(s)	64, 361, 445
ApeKI	GCWGC	3 cut(s)	158, 251, 278
AspLEI	GCGC	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	145, 263, 290
BccI	CCATC	2 cut(s)	127, 459
BceAI	ACGGC	1 cut(s)	348
BfaI	CTAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	5 cut(s)	159, 252, 279, 448, 451
BlsI	GCNGC	5 cut(s)	160, 253, 280, 449, 452
BmeT110I	CYCGRG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	364, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	364, 448
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	145, 263, 290
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	66, 363, 447
BshNI	GGYRCC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	73
BsnI	GGCC	3 cut(s)	66, 363, 447
BsoBI	CYCGRG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	354, 448, 450
BspANI	GGCC	3 cut(s)	66, 363, 447
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	364, 448
BssNI	GRCGYC	1 cut(s)	121
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst6I	CTCTTC	3 cut(s)	21, 82, 382
BstACI	GRCGYC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	2 cut(s)	364, 448
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	450
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 360
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	3 cut(s)	145, 263, 290
BsuRI	GGCC	3 cut(s)	66, 363, 447
BtgI	CCRYGG	2 cut(s)	364, 448
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	123
Cfr42I	CCGCGG	1 cut(s)	451
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	9 cut(s)	8, 14, 38, 66, 158, 254, 281, 363, 447
CviKI_1	RGCY	9 cut(s)	8, 14, 38, 66, 158, 254, 281, 363, 447
DinI	GGCGCC	1 cut(s)	122
EaeI	YGGCCR	2 cut(s)	361, 445
Eam1104I	CTCTTC	3 cut(s)	21, 82, 382
EarI	CTCTTC	3 cut(s)	21, 82, 382
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
FaeI	CATG	1 cut(s)	25
FaiI	YATR	8 cut(s)	23, 41, 43, 114, 116, 118, 176, 293
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	5 cut(s)	159, 252, 279, 448, 451
Fsp4HI	GCNGC	5 cut(s)	159, 252, 279, 448, 451
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	5 cut(s)	159, 252, 279, 448, 451
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	66, 363, 447
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	99, 305
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	86, 101
HpyCH4V	TGCA	2 cut(s)	145, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 360
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	121
KasI	GGCGCC	1 cut(s)	120
KspI	CCGCGG	1 cut(s)	451
LpnPI	CCDG	7 cut(s)	32, 97, 212, 249, 267, 281, 385
Lsp1109I	GCAGC	3 cut(s)	145, 263, 290
MaeI	CTAG	1 cut(s)	35
MboII	GAAGA	6 cut(s)	38, 99, 176, 357, 399, 438
MluCI	AATT	1 cut(s)	454
Mly113I	GGCGCC	1 cut(s)	121
MlyI	GAGTC	2 cut(s)	108, 299
MnlI	CCTC	5 cut(s)	22, 67, 335, 383, 386
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	281, 450
MspI	CCGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	63, 360
NarI	GGCGCC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	122
NmeAIII	GCCGAG	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	9
PkrI	GCNGC	5 cut(s)	160, 253, 280, 449, 452
PleI	GAGTC	2 cut(s)	107, 299
PluTI	GGCGCC	1 cut(s)	124
PpsI	GAGTC	2 cut(s)	107, 299
PspN4I	GGNNCC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	281
SacII	CCGCGG	1 cut(s)	451
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	5 cut(s)	159, 252, 279, 448, 451
SchI	GAGTC	2 cut(s)	108, 299
SfoI	GGCGCC	1 cut(s)	122
Sfr274I	CTCGAG	1 cut(s)	9
Sfr303I	CCGCGG	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	454
SsiI	CCGC	3 cut(s)	354, 448, 450
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	35
TaqI	TCGA	2 cut(s)	10, 97
TasI	AATT	1 cut(s)	454
TauI	GCSGC	2 cut(s)	450, 453
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	3 cut(s)	158, 251, 278
TspRI	CASTG	1 cut(s)	109
XagI	CCTNNNNNAGG	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	9
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.