Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Forward (+)

32689564 .. 32697936

Gene Structure 8373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1261300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCAATCAAGTTCTTATATTAATTATCAATACATTTTTCTTTTCAGTGTAATTCCTGCTTTCAAGTCTGTTGCCGAGGAGCTACTTAACACCTCTGGCCTATCTGCAGTAGATCTGCTGTCAAAAGCACTTGCTAAAGCTGCTGGCTACACCGAGATAAAGAAGAGATCACTTCTGAGCTCAATGGAGAACCATGTCACAGTTCTTCTCGAGGCTGGAAAGCCCATTTATTCGCCGTCTTTTGCTTTTGGGGTCTTGAATATATTCTTGCTTGAGGAGAAGGTTGAGTCAGTGAAGGGTATGGCACTAACAGCTGATGGAAATGGTGCAGTTTTTGATTTGGCAGCCGAAGATTTGGATTTGTTTCTTGCTGGTCAGGAAAATGCAGGTGCAGCTAATGTGAGCATAACGGTGTTGAAATCACTGCCTGATTTACAAGAACAAGAATCAAGGAATACAAGATTTGGTGGTGGAGGAAGGTTTGGCCGTGGTAGTGGTGGAGGTTTTCGAAGTGATAGGTATTCCAACAACCGATCCTGTGGTGGTGGGAGAGGTCGCGGCAACAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

191

Amino Acids

20.26

Weight (kDa)

7.73

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DD_DDX21-DDX50	PF26142	16 - 46	7e-10	DDX21/DDX50 dimerisation domain
GUCT	PF08152	49 - 146	6.8e-28	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
AccII	CGCG	1 cut(s)	558
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	64, 259, 418
AluBI	AGCT	5 cut(s)	82, 140, 180, 314, 395
AluI	AGCT	5 cut(s)	82, 140, 180, 314, 395
Alw21I	GWGCWC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	528
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	2 cut(s)	97, 484
ApeKI	GCWGC	3 cut(s)	140, 344, 392
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	3 cut(s)	127, 356, 404
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	2 cut(s)	220, 471
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	4 cut(s)	141, 345, 393, 559
BlsI	GCNGC	4 cut(s)	142, 346, 394, 560
BmeT110I	CYCGRG	1 cut(s)	209
Bpu14I	TTCGAA	1 cut(s)	508
BpuEI	CTTGAG	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	75, 487
BseDI	CCNNGG	2 cut(s)	75, 487
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	2 cut(s)	92, 290
BseXI	GCAGC	3 cut(s)	127, 356, 404
BsgI	GTGCAG	2 cut(s)	348, 411
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	99, 486
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	209
BsnI	GGCC	2 cut(s)	99, 486
BsoBI	CYCGRG	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	112, 167, 533
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	99, 486
BspCNI	CTCAG	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	109
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	528
BspT104I	TTCGAA	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	75, 487
BssMI	GATC	3 cut(s)	112, 167, 533
Bst4CI	ACNGT	2 cut(s)	202, 412
Bst6I	CTCTTC	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	176
BstDSI	CCRYGG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	3 cut(s)	115, 170, 536
BstMBI	GATC	3 cut(s)	112, 167, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 311, 392
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	3 cut(s)	127, 356, 404
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	99, 486
BtgI	CCRYGG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	52, 297, 422
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	3 cut(s)	114, 169, 535
DpnII	GATC	3 cut(s)	112, 167, 533
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	182
FaeI	CATG	1 cut(s)	197
FaiI	YATR	5 cut(s)	18, 195, 263, 302, 407
FatI	CATG	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	141, 345, 393, 559
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	4 cut(s)	141, 345, 393, 559
GluI	GCNGC	4 cut(s)	141, 345, 393, 559
HaeIII	GGCC	2 cut(s)	99, 486
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	2 cut(s)	287, 446
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	3 cut(s)	209, 256, 377
HpyAV	CCTTC	3 cut(s)	274, 289, 471
HpyCH4III	ACNGT	2 cut(s)	202, 412
HpyCH4V	TGCA	5 cut(s)	4, 107, 329, 386, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 311, 392
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	3 cut(s)	112, 167, 533
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	9 cut(s)	69, 81, 129, 201, 357, 362, 372, 441, 550
Lsp1109I	GCAGC	3 cut(s)	127, 356, 404
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	3 cut(s)	114, 169, 535
MboI	GATC	3 cut(s)	112, 167, 533
MboII	GAAGA	3 cut(s)	175, 197, 362
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	2 cut(s)	22, 51
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	7 cut(s)	70, 103, 205, 268, 467, 494, 545
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	21, 87
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	140, 311, 392
NdeII	GATC	3 cut(s)	112, 167, 533
NlaIII	CATG	1 cut(s)	197
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	209
PaqCI	CACCTGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	142, 346, 394, 560
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PshBI	ATTAAT	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	21, 87
SatI	GCNGC	4 cut(s)	141, 345, 393, 559
Sau3AI	GATC	3 cut(s)	112, 167, 533
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	105
Sfr274I	CTCGAG	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	508
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	2 cut(s)	209, 272
SmoI	CTYRAG	2 cut(s)	209, 272
Sse9I	AATT	2 cut(s)	22, 51
SsiI	CCGC	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	202, 412
TaqI	TCGA	2 cut(s)	210, 508
TasI	AATT	2 cut(s)	22, 51
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	21, 87
Tru9I	TTAA	2 cut(s)	21, 87
TscAI	CASTG	3 cut(s)	52, 297, 429
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	140, 344, 392
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	3 cut(s)	52, 297, 429
VspI	ATTAAT	1 cut(s)	21
XhoI	CTCGAG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.