Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Reverse (-)

71268853 .. 71269820

Gene Structure 968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATTCAGTATGAACCTCCACGTAATGCAGAAGACTATATCCATCGATGTGGATGCACAGGGAGAGCAGGTGAGGATCCTGGATTGTTTCTCTCTTTTGGTATTGAATGGTTGCAATGTATAATGAGTGAAATTCCCGCTTTCGAGTCTATTGCAGAGGAGCTTCTTAACACCTCTGGCCTATATGCAGAAAACTACTGGCAAAGGCCCTTGCTAAGACTGCTGTTCTTGCCCGAGGAGAAGGTTGAGTCACTAAAGGGTATGAAGTTAATAACTGACGGAAAGGGTGAATGTTTTGAAGTAGCTGCTGAGATTTGGATATTCTTGCTGGTTCGAAGAAAGTCGCTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

117

Amino Acids

13.44

Weight (kDa)

4.81

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	59
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	71, 84
AcsI	RAATTY	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	107, 299
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	2 cut(s)	163, 305
AluI	AGCT	2 cut(s)	163, 305
AlwI	GGATC	2 cut(s)	71, 84
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	178, 206
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	83, 299
AsuII	TTCGAA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	233
BamHI	GGATCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	51
BcgI	CGANNNNNNTGC	4 cut(s)	36, 70, 134, 168
BciT130I	CCWGG	1 cut(s)	81
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	39
Bpu14I	TTCGAA	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	173, 251
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	2 cut(s)	180, 208
BshVI	ATCGAT	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	233
BsnI	GGCC	2 cut(s)	180, 208
BsoBI	CYCGRG	1 cut(s)	233
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	180, 208
BspCNI	CTCAG	1 cut(s)	301
BspDI	ATCGAT	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	71, 84
BspT104I	TTCGAA	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	215, 309
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 229
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	180, 208
BsuTUI	ATCGAT	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	46
CviJI	RGCY	4 cut(s)	163, 180, 208, 305
CviKI_1	RGCY	4 cut(s)	163, 180, 208, 305
DdeI	CTNAG	2 cut(s)	215, 309
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	79
FaiI	YATR	6 cut(s)	12, 39, 122, 184, 186, 263
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	180, 208
HinfI	GANTC	3 cut(s)	4, 146, 248
HphI	GGTGA	2 cut(s)	83, 299
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	29, 57, 115, 155, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 229
HpyF3I	CTNAG	2 cut(s)	215, 309
HpySE526I	ACGT	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	45, 54, 66, 93, 162, 184, 314
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	1 cut(s)	44
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	44, 348
MflI	RGATCY	1 cut(s)	76
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	155, 257
MnlI	CCTC	5 cut(s)	27, 67, 151, 184, 229
MseI	TTAA	2 cut(s)	168, 269
MslI	CAYNNNNRTG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	220, 229
NdeII	GATC	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	154, 256
PpsI	GAGTC	2 cut(s)	154, 256
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	168, 269
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	2 cut(s)	155, 257
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	7 cut(s)	19, 25, 73, 165, 176, 246, 307
SfaNI	GCATC	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	3 cut(s)	46, 144, 334
TasI	AATT	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	168, 269
Tru9I	TTAA	2 cut(s)	168, 269
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	27, 278
TspGWI	ACGGA	1 cut(s)	294
XapI	RAATTY	1 cut(s)	132
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.