Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Forward (+)

24566988 .. 24567802

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATCCAAGGTCAAATTTTTCAAAAAATCGAGAGGGAGTCGGGGGTTAAATTTGAACACATTTCTGCTCCGCAGCCACTTGATATAGCTAAAGCAGGTCATGATGCAGCAGAAATGATAACCAAAATCACTGATAGTGTAATTCCTGCTTTCAAGTCTTTTGCCGAGGAGCTACTTAACACTTCTGGCCTATCTGCAGTAGATCTATTGTCGAAAGCACTTGCTAAAGCTGCCGGCTACACCGAGATTCTTAGCTCTATGGAGAACCATGTCACAGTACTTCTTGAGGCTGGAAAGCCCATTTATTCACCGTCTTTTGCTTTTGCGGTCTTGAGGAGATTCTTGCCCGAGAAGAAGGTTGAATCAGTGAAGGGCATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

128

Amino Acids

13.76

Weight (kDa)

6.29

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DD_DDX21-DDX50	PF26142	25 - 76	1.3e-16	DDX21/DDX50 dimerisation domain
GUCT	PF08152	83 - 126	4.9e-08	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AciI	CCGC	2 cut(s)	71, 326
AcsI	RAATTY	2 cut(s)	15, 50
AfaI	GTAC	1 cut(s)	279
AgsI	TTSAA	4 cut(s)	23, 56, 154, 362
AluBI	AGCT	4 cut(s)	89, 172, 230, 255
AluI	AGCT	4 cut(s)	89, 172, 230, 255
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	187, 378
ApeKI	GCWGC	3 cut(s)	73, 107, 230
ApoI	RAATTY	2 cut(s)	15, 50
AsuHPI	GGTGA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	347
BbvI	GCAGC	3 cut(s)	85, 119, 217
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	74, 108, 231
BlsI	GCNGC	3 cut(s)	75, 109, 232
BmcAI	AGTACT	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	2 cut(s)	305, 352
BsaJI	CCNNGG	2 cut(s)	7, 165
Bse118I	RCCGGY	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	7, 165
BseRI	GAGGAG	2 cut(s)	182, 349
BseXI	GCAGC	3 cut(s)	85, 119, 217
BshFI	GGCC	2 cut(s)	189, 380
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	234
BsnI	GGCC	2 cut(s)	189, 380
BsoBI	CYCGRG	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	3, 202
BspACI	CCGC	2 cut(s)	71, 326
BspANI	GGCC	2 cut(s)	189, 380
BspHI	TCATGA	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	7, 165
BssMI	GATC	2 cut(s)	3, 202
BssT1I	CCWWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	277, 312
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	6, 205
BstMBI	GATC	2 cut(s)	3, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	85, 119, 217
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	189, 380
BtsIMutI	CAGTG	2 cut(s)	129, 372
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	235
CciI	TCATGA	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	3 cut(s)	101, 269, 376
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	5, 204
DpnII	GATC	2 cut(s)	3, 202
Eco130I	CCWWGG	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	7
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	3 cut(s)	104, 272, 379
FaiI	YATR	5 cut(s)	86, 102, 260, 270, 377
FatI	CATG	3 cut(s)	100, 268, 375
Fnu4HI	GCNGC	3 cut(s)	74, 108, 231
Fsp4HI	GCNGC	3 cut(s)	74, 108, 231
GluI	GCNGC	3 cut(s)	74, 108, 231
HaeIII	GGCC	2 cut(s)	189, 380
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	3 cut(s)	104, 272, 379
HinfI	GANTC	4 cut(s)	38, 247, 339, 362
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	300
Hpy188III	TCNNGA	4 cut(s)	31, 101, 284, 331
HpyAV	CCTTC	2 cut(s)	349, 364
HpyCH4III	ACNGT	2 cut(s)	277, 312
HpyCH4V	TGCA	2 cut(s)	107, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	104, 272, 379
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	3, 202
LmnI	GCTCC	2 cut(s)	73, 169
LpnPI	CCDG	5 cut(s)	81, 159, 171, 247, 276
Lsp1109I	GCAGC	3 cut(s)	85, 119, 217
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	5, 204
MboI	GATC	2 cut(s)	3, 202
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	3 cut(s)	15, 50, 141
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	27, 160, 280, 327
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	2 cut(s)	48, 177
MspI	CCGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	230
NaeI	GCCGGC	1 cut(s)	235
NdeII	GATC	2 cut(s)	3, 202
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	104, 272, 379
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	247, 339, 362
PkrI	GCNGC	3 cut(s)	75, 109, 232
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	48, 177
SatI	GCNGC	3 cut(s)	74, 108, 231
Sau3AI	GATC	2 cut(s)	3, 202
ScaI	AGTACT	1 cut(s)	279
SchI	GAGTC	1 cut(s)	47
SetI	ASST	7 cut(s)	13, 91, 100, 174, 232, 257, 360
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	284, 331
SmoI	CTYRAG	2 cut(s)	284, 331
Sse9I	AATT	3 cut(s)	15, 50, 141
SsiI	CCGC	2 cut(s)	71, 326
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	277, 312
TaqI	TCGA	2 cut(s)	30, 212
TasI	AATT	3 cut(s)	15, 50, 141
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	247, 339, 362
Tru1I	TTAA	2 cut(s)	48, 177
Tru9I	TTAA	2 cut(s)	48, 177
TscAI	CASTG	2 cut(s)	136, 372
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	73, 107, 230
Tsp45I	GTSAC	1 cut(s)	271
TspRI	CASTG	2 cut(s)	136, 372
XapI	RAATTY	2 cut(s)	15, 50
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.