DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1260400.v1.1 MD07G1261300.v1.1 |
| pyrus_communis | pycom01g19980 pycom07g23340 pycom07g23730 |
| rosa_chinensis | RchiOBHm_Chr5g0065421 |
| rosa_laevigata | RLG00000026666 |
| rosa_samantha | Rh5DG457200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 243 |
| AdeI | CACNNNGTG | 1 cut(s) | 113 |
| AfaI | GTAC | 1 cut(s) | 11 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 49 |
| AgeI | ACCGGT | 1 cut(s) | 178 |
| AgsI | TTSAA | 3 cut(s) | 176, 195, 253 |
| AsiGI | ACCGGT | 1 cut(s) | 178 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 257 |
| AsuC2I | CCSGG | 1 cut(s) | 44 |
| AxyI | CCTNAGG | 1 cut(s) | 267 |
| BanII | GRGCYC | 1 cut(s) | 33 |
| BclI | TGATCA | 1 cut(s) | 120 |
| BcnI | CCSGG | 1 cut(s) | 44 |
| Bme1390I | CCNGG | 1 cut(s) | 44 |
| BmiI | GGNNCC | 1 cut(s) | 150 |
| BmrFI | CCNGG | 1 cut(s) | 44 |
| BpuEI | CTTGAG | 1 cut(s) | 37 |
| BpuMI | CCSGG | 1 cut(s) | 44 |
| BsaJI | CCNNGG | 1 cut(s) | 43 |
| BsaWI | WCCGGW | 1 cut(s) | 178 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 49 |
| Bse118I | RCCGGY | 1 cut(s) | 178 |
| Bse21I | CCTNAGG | 1 cut(s) | 267 |
| Bse3DI | GCAATG | 1 cut(s) | 330 |
| BseDI | CCNNGG | 1 cut(s) | 43 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BseMI | GCAATG | 1 cut(s) | 330 |
| BseMII | CTCAG | 1 cut(s) | 258 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BshTI | ACCGGT | 1 cut(s) | 178 |
| BsiSI | CCGG | 2 cut(s) | 43, 179 |
| BslFI | GGGAC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 49 |
| BsmFI | GGGAC | 1 cut(s) | 70 |
| Bsp1286I | GDGCHC | 1 cut(s) | 33 |
| Bsp143I | GATC | 2 cut(s) | 120, 139 |
| BspCNI | CTCAG | 1 cut(s) | 259 |
| BspLI | GGNNCC | 1 cut(s) | 150 |
| BspQI | GCTCTTC | 1 cut(s) | 21 |
| BsrDI | GCAATG | 1 cut(s) | 330 |
| BsrFI | RCCGGY | 1 cut(s) | 178 |
| BssAI | RCCGGY | 1 cut(s) | 178 |
| BssECI | CCNNGG | 1 cut(s) | 43 |
| BssMI | GATC | 2 cut(s) | 120, 139 |
| Bst4CI | ACNGT | 2 cut(s) | 9, 172 |
| Bst6I | CTCTTC | 2 cut(s) | 21, 248 |
| BstDEI | CTNAG | 2 cut(s) | 136, 267 |
| BstKTI | GATC | 2 cut(s) | 123, 142 |
| BstMBI | GATC | 2 cut(s) | 120, 139 |
| BstSCI | CCNGG | 1 cut(s) | 42 |
| Bsu36I | CCTNAGG | 1 cut(s) | 267 |
| BtsI | GCAGTG | 1 cut(s) | 107 |
| BtsIMutI | CAGTG | 1 cut(s) | 107 |
| Cfr10I | RCCGGY | 1 cut(s) | 178 |
| Csp6I | GTAC | 1 cut(s) | 10 |
| CspAI | ACCGGT | 1 cut(s) | 178 |
| CviJI | RGCY | 1 cut(s) | 31 |
| CviKI_1 | RGCY | 1 cut(s) | 31 |
| CviQI | GTAC | 1 cut(s) | 10 |
| DdeI | CTNAG | 2 cut(s) | 136, 267 |
| DpnI | GATC | 2 cut(s) | 122, 141 |
| DpnII | GATC | 2 cut(s) | 120, 139 |
| DraIII | CACNNNGTG | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 2 cut(s) | 21, 248 |
| EarI | CTCTTC | 2 cut(s) | 21, 248 |
| Eco24I | GRGCYC | 1 cut(s) | 33 |
| Eco81I | CCTNAGG | 1 cut(s) | 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 33 |
| FaiI | YATR | 7 cut(s) | 130, 132, 144, 146, 199, 243, 296 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 18, 50, 245, 277 |
| FaqI | GGGAC | 1 cut(s) | 70 |
| FauNDI | CATATG | 1 cut(s) | 144 |
| FbaI | TGATCA | 1 cut(s) | 120 |
| FriOI | GRGCYC | 1 cut(s) | 33 |
| HapII | CCGG | 2 cut(s) | 43, 179 |
| HincII | GTYRAC | 1 cut(s) | 303 |
| HindII | GTYRAC | 1 cut(s) | 303 |
| HinfI | GANTC | 1 cut(s) | 281 |
| HpaI | GTTAAC | 1 cut(s) | 303 |
| HpaII | CCGG | 2 cut(s) | 43, 179 |
| Hpy166II | GTNNAC | 1 cut(s) | 303 |
| Hpy188I | TCNGA | 1 cut(s) | 153 |
| Hpy188III | TCNNGA | 1 cut(s) | 250 |
| Hpy8I | GTNNAC | 1 cut(s) | 303 |
| HpyAV | CCTTC | 1 cut(s) | 268 |
| HpyCH4III | ACNGT | 2 cut(s) | 9, 172 |
| HpyCH4V | TGCA | 1 cut(s) | 323 |
| HpyF3I | CTNAG | 2 cut(s) | 136, 267 |
| Ksp22I | TGATCA | 1 cut(s) | 120 |
| KspAI | GTTAAC | 1 cut(s) | 303 |
| Kzo9I | GATC | 2 cut(s) | 120, 139 |
| LguI | GCTCTTC | 1 cut(s) | 21 |
| LpnPI | CCDG | 3 cut(s) | 56, 192, 279 |
| MaeIII | GTNAC | 2 cut(s) | 3, 282 |
| MalI | GATC | 2 cut(s) | 122, 141 |
| MboI | GATC | 2 cut(s) | 120, 139 |
| MboII | GAAGA | 2 cut(s) | 38, 265 |
| MhlI | GDGCHC | 1 cut(s) | 33 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MnlI | CCTC | 2 cut(s) | 249, 262 |
| MroXI | GAANNNNTTC | 1 cut(s) | 257 |
| MseI | TTAA | 2 cut(s) | 81, 302 |
| MspI | CCGG | 2 cut(s) | 43, 179 |
| MspR9I | CCNGG | 1 cut(s) | 44 |
| NciI | CCSGG | 1 cut(s) | 44 |
| NdeI | CATATG | 1 cut(s) | 144 |
| NdeII | GATC | 2 cut(s) | 120, 139 |
| NlaIV | GGNNCC | 1 cut(s) | 150 |
| NmuCI | GTSAC | 2 cut(s) | 3, 282 |
| PciSI | GCTCTTC | 1 cut(s) | 21 |
| PdmI | GAANNNNTTC | 1 cut(s) | 257 |
| PinAI | ACCGGT | 1 cut(s) | 178 |
| PleI | GAGTC | 1 cut(s) | 289 |
| PpsI | GAGTC | 1 cut(s) | 289 |
| PsiI | TTATAA | 1 cut(s) | 243 |
| PspN4I | GGNNCC | 1 cut(s) | 150 |
| RsaI | GTAC | 1 cut(s) | 11 |
| RsaNI | GTAC | 1 cut(s) | 10 |
| SapI | GCTCTTC | 1 cut(s) | 21 |
| SaqAI | TTAA | 2 cut(s) | 81, 302 |
| Sau3AI | GATC | 2 cut(s) | 120, 139 |
| SchI | GAGTC | 1 cut(s) | 290 |
| ScrFI | CCNGG | 1 cut(s) | 44 |
| SduI | GDGCHC | 1 cut(s) | 33 |
| SetI | ASST | 3 cut(s) | 222, 260, 279 |
| SmlI | CTYRAG | 1 cut(s) | 16 |
| SmoI | CTYRAG | 1 cut(s) | 16 |
| StyD4I | CCNGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 2 cut(s) | 9, 172 |
| Tru1I | TTAA | 2 cut(s) | 81, 302 |
| Tru9I | TTAA | 2 cut(s) | 81, 302 |
| TscAI | CASTG | 1 cut(s) | 114 |
| TseFI | GTSAC | 2 cut(s) | 3, 282 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 282 |
| TspDTI | ATGAA | 1 cut(s) | 311 |
| TspGWI | ACGGA | 1 cut(s) | 327 |
| TspRI | CASTG | 1 cut(s) | 114 |
| XmnI | GAANNNNTTC | 1 cut(s) | 257 |