Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0019291

Physical Location & Seq

Genomic Coordinates Forward (+)

24298375 .. 24298802

Gene Structure 428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCACTAACAGCTGATGGAAATGGTGCAGTTTTTGATGTGGCATCTGAAGATTTGGATTTGTTTCTTGCTGGTCAGGAAAATGCAGCTAATGTGAGCATAACGGTGTTGAAATCACTGCCTGATTTACAAGAAAAAGAATCAAGGAATACAAGATTTGGCGGTGGTGGAAGGTTTGGCCGTGGAGGTGGAGGAGGTTTTCGAAATGATAGGTATTCCAACAACCGATCCGGTGGTGGTGGTGGTGGTGGGAGAGGTGGCGGCAACAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017151 GO:0019899 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD GUCT Helicase_C

Protein Analysis

92

Amino Acids

9.31

Weight (kDa)

8.25

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUCT	PF08152	1 - 44	1.2e-10	GUCT (NUC152) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019291)

Species	Orthologous Gene IDs
malus_domestica	MD07G1260400.v1.1 MD07G1261300.v1.1
pyrus_communis	pycom01g19980 pycom07g23340 pycom07g23730
rosa_chinensis	RchiOBHm_Chr5g0065421
rosa_laevigata	RLG00000026666
rosa_samantha	Rh5DG457200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 261
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	2 cut(s)	14, 89
AluI	AGCT	2 cut(s)	14, 89
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	11, 264
BceAI	ACGGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	87, 262
BlsI	GCNGC	2 cut(s)	88, 263
BmsI	GCATC	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	231
BsnI	GGCC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	227
BspACI	CCGC	2 cut(s)	162, 261
BspANI	GGCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	181
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
CviJI	RGCY	3 cut(s)	14, 89, 180
CviKI_1	RGCY	3 cut(s)	14, 89, 180
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	69
FaiI	YATR	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	87, 262
Fsp4HI	GCNGC	2 cut(s)	87, 262
GluI	GCNGC	2 cut(s)	87, 262
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	231
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	29, 86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	227
LpnPI	CCDG	4 cut(s)	57, 62, 135, 244
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	53
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	179, 185, 188, 248
MslI	CAYNNNNRTG	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	88, 263
PvuII	CAGCTG	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	104
SatI	GCNGC	2 cut(s)	87, 262
Sau3AI	GATC	1 cut(s)	227
SetI	ASST	7 cut(s)	16, 91, 176, 190, 199, 215, 259
SfaNI	GCATC	1 cut(s)	53
SfuI	TTCGAA	1 cut(s)	202
SgeI	CNNG	9 cut(s)	80, 84, 89, 134, 143, 156, 165, 194, 243
SmiMI	CAYNNNNRTG	1 cut(s)	104
SsiI	CCGC	2 cut(s)	162, 261
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	202
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	86
TspRI	CASTG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.