Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005199

Physical Location & Seq

Genomic Coordinates Forward (+)

34566126 .. 34573712

Gene Structure 7587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1282600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGAGAATATGCAGTATGCTGAGGAGCTTGTGAGGGAGTTTCTTGTGTTTAAAGGATTCACTAACACTTTGCAAGCTTTCGATTCTGAATTATCTACGGATATCAGTAAAGGGTTTCAAGTAGATAGGATAATGGAATTAATCTTCTCAGTGTATGTACCTAAGTTTCAGGCAGAAAAATTAGTTGGTCTGTTCAGTTTTTTCAAGCAGTGTCTCTCTTCATCATCCGAGACAGTACTTTTGACTACTCTTTCGAAACTGGAGGTGTCTATTCTACGCTACTACGTTGTTAATGCCATCCAGTCAGGGAGGAGGGACAAGGTTTTAGAGTTCTTTGGAATGATTGGGAATGATTTGTTGCAAAGGGGCCAGGATTGGACTGCATGGTTTGCCATTCCTTATGTAAAGAAACCAAACTCTGATCCTGAGTTTCGTATATACTTTTCAAAGGAATGGTATGAGGCCTTGCGTTTATCTGTCAGAAATTTCTTTAGTGAGATCTTCAACGTGGGCTGTTCGTCGATCTTGGTACTTGTTGTCACATGGCGCCCAACTATTTTGAAGAAAATGCCCTTAACTAAACCACGCATACCAGCCCTTATGAAAATTAGTTCAGAAAAGACTACTGTCAACCATCTGAAAAAAGACATCAAGCAACTCAAGCTCAAGTTATCAAAACTTCAGGCTTTGTTGGAGGAAAAAGATGGTCAATTATGCCAGTTAAGAAGTTGTTCGTCAGTAACCGATGCAAGCACTGAACGAACCATGAGTTCATCAAGTGTAGTGCATGAGGAAAATCGTCTTATATCTAAGGATACTCAGGAAACTTGCCCTCCTGATACTTTTCAAATAAGGGGAGCAGAGGTGGATCCAGATTGGGTTGTTGCTGGACACATGGGAAACAGACCAGAGTTTAACATATCTAAGTCTGATCCTAATTTAAGTTCTCAATCAACTCCTCGCGTGAGAGATGGTGGAACTGCTGATAGTATTCAGCTATACGAGGATGACCCCTATAATGAAAATGGCAGGGAAAGCCATTTAGAAGACTTCACTGAATTTAAGGTTGACTTCCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGCTGCCGCTTTTCTGCATCTGGAAATAATATAGCCAGCGCATCTGAAGATGGAACAGTAAGGATATGGACCTATGACTCGTCAACTCCGGCATCTAGAAATGCAACCATTTATTGTGGAGCCAAGATTATGTCACTTGACTGGGAGTGCAAATCTGACCGATTGCTTCTGATAGGCACTGCTAATGGAGGCATTAAAGCATGGAATGTCGATGCAAAGAGAGTTGTCTGTGATCTTAGCACGAGTGAAGAATTTCCAAGTATCCTGGATATAAAGTGCAGCCCTGTAGAGCCAATTTTTGTTACTGCAGCAGCATCCAAGGGGCACGGATCAAGTTATGTTGATAGTATGGGGTTCGCTTCATTAACTGTGTGGAATATGAAGACGTGGAAGGCTATGCAACTTATATTCTTAAGCCTTTCATTTCCGACACTTGTAAGTTTAGTGCTTAACCTTTTGGGTTTCGTGAAGACAGTTCTTCCTCTTGGTAAAGATCCACCTGCAATAACATCCCTTAGTTTCAATCACAATGGGAAAGTTTTAGTGGCCGCTGCAACTGATGGAATGATTCACATGTTTGATATGTCTGCCTATCTACAAATAACCGGGTGGCCTGCACATGACTCTGCTATAAGCTCCATTCTTTTCGGCCCTGATGAGACAAGTATTTTCAGTTTGGGAGTAGATGGAAAGGTGTTTGAATGGAGCTTGCAAAACCAAGGTCAAATCCTATGGTCAAGAAACTGTACCAGGTTCTGTGACCCTGAGAGCTCAAAAAGTTGCAGACATGAAATGGCTTTAGATGCTACCGGGAGGAGACTATTGGTAACATCCGGTTCCGTAAGAGCGCCCATATACCAGGTTCGGGGTCATGTGAATGGGTTGAGCCCTCTCCCACACAGTGCTGCTATAACTACTGTAGATTGGCACCCGACTTTACCCATCTTCTTAACAGGATCGGCTGATAACTCTGTCCTGGTAACATCTATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

702

Amino Acids

78.11

Weight (kDa)

6.07

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH_Armc9	PF23138	54 - 169	4.7e-18	Armc9, CTLH-like domain
WD40_CDC20-Fz	PF24807	347 - 502	3.1e-09	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	357 - 446	7.4e-07	TEP-1 second beta-propeller
WD40_WDHD1_1st	PF24817	359 - 454	1.3e-08	WDHD1 first WD40 domain
WD40	PF00400	360 - 393	8.1e-09	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	361 - 440	3.7e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	365 - 609	4.9e-16	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	524 - 688	9.2e-07	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	538 - 609	2.1e-07	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	538 - 610	1.1e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	539 - 682	4.6e-11	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005199)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700
malus_domestica	MD01G1212200.v1.1 MD07G1282600.v1.1
prunus_persica	Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1
pyrus_communis	pycom01g22250
rosa_chinensis	RchiOBHm_Chr1g0379661
rosa_laevigata	RLG00000026372
rosa_multiflora	Rmu_sc0013028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279980
rosa_rugosa	Rorug01G0413900 Rorug01G0414000.1 Rorug01G0414100.1 Rorug01G0414200.1
rosa_samantha	Rh1AG437700 Rh1BG393900 Rh1CG406800 Rh1DG424800
rosa_wichuraiana	Rw1G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1618
Acc36I	ACCTGC	1 cut(s)	1618
AccB1I	GGYRCC	2 cut(s)	546, 2037
AccII	CGCG	1 cut(s)	963
AciI	CCGC	2 cut(s)	1117, 1659
AclWI	GGATC	7 cut(s)	416, 863, 876, 926, 1447, 1598, 2074
AcoI	YGGCCR	1 cut(s)	1656
AcsI	RAATTY	3 cut(s)	484, 1058, 1361
AcuI	CTGAAG	2 cut(s)	665, 1176
AcyI	GRCGYC	1 cut(s)	547
AdeI	CACNNNGTG	1 cut(s)	2012
AfaI	GTAC	4 cut(s)	159, 237, 531, 1858
AfiI	CCNNNNNNNGG	1 cut(s)	1975
AflII	CTTAAG	1 cut(s)	1522
AflIII	ACRYGT	1 cut(s)	1683
AgsI	TTSAA	8 cut(s)	119, 205, 447, 505, 562, 848, 1633, 1811
AjiI	CACGTC	1 cut(s)	1497
AjnI	CCWGG	6 cut(s)	369, 1074, 1374, 1859, 1968, 2085
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	7 cut(s)	28, 77, 664, 997, 1746, 1818, 1881
AluI	AGCT	7 cut(s)	28, 77, 664, 997, 1746, 1818, 1881
Alw21I	GWGCWC	1 cut(s)	1883
Alw26I	GTCTC	5 cut(s)	218, 224, 1073, 1763, 1921
AlwI	GGATC	7 cut(s)	416, 863, 876, 926, 1447, 1598, 2074
AlwNI	CAGNNNCTG	2 cut(s)	1113, 1866
AoxI	GGCC	6 cut(s)	367, 462, 1090, 1656, 1721, 1759
ApeKI	GCWGC	6 cut(s)	1113, 1389, 1418, 1421, 1661, 2015
ApoI	RAATTY	3 cut(s)	484, 1058, 1361
ArsI	GACNNNNNNTTYG	6 cut(s)	223, 235, 255, 267, 1816, 1848
AseI	ATTAAT	1 cut(s)	140
Asp700I	GAANNNNTTC	2 cut(s)	730, 1362
AspLEI	GCGC	3 cut(s)	549, 1151, 1960
AspS9I	GGNCC	4 cut(s)	367, 1090, 1179, 1760
AsuC2I	CCSGG	2 cut(s)	1717, 1921
AsuII	TTCGAA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	1179
BaeGI	GKGCMC	1 cut(s)	1437
BamHI	GGATCC	1 cut(s)	868
BanI	GGYRCC	2 cut(s)	546, 2037
BanII	GRGCYC	2 cut(s)	1883, 2000
BauI	CACGAG	1 cut(s)	1351
BbsI	GAAGAC	3 cut(s)	1053, 1499, 1586
Bbv12I	GWGCWC	1 cut(s)	1883
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	6 cut(s)	1100, 1401, 1430, 1433, 1648, 2002
BccI	CCATC	8 cut(s)	305, 642, 698, 965, 1154, 1664, 1790, 2060
BciT130I	CCWGG	6 cut(s)	371, 1076, 1376, 1861, 1970, 2087
BciVI	GTATCC	2 cut(s)	808, 1382
BcnI	CCSGG	2 cut(s)	1717, 1921
BcoDI	GTCTC	5 cut(s)	218, 224, 1073, 1763, 1921
BfaI	CTAG	1 cut(s)	1206
BfmI	CTRYAG	3 cut(s)	1395, 1416, 2028
BfoI	RGCGCY	2 cut(s)	550, 1961
BfrI	CTTAAG	1 cut(s)	1522
BfuAI	ACCTGC	1 cut(s)	1618
BfuI	GTATCC	2 cut(s)	808, 1382
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	8 cut(s)	1114, 1117, 1390, 1419, 1422, 1659, 1662, 2016
BlsI	GCNGC	8 cut(s)	1115, 1118, 1391, 1420, 1423, 1660, 1663, 2017
BmcAI	AGTACT	1 cut(s)	237
Bme1390I	CCNGG	8 cut(s)	371, 1076, 1376, 1717, 1861, 1921, 1970, 2087
Bme18I	GGWCC	1 cut(s)	1179
BmgBI	CACGTC	1 cut(s)	1497
BmgT120I	GGNCC	4 cut(s)	367, 1090, 1179, 1760
BmiI	GGNNCC	6 cut(s)	368, 548, 870, 1231, 1948, 2039
BmrFI	CCNGG	8 cut(s)	371, 1076, 1376, 1717, 1861, 1921, 1970, 2087
BmrI	ACTGGG	1 cut(s)	1261
BmsI	GCATC	7 cut(s)	736, 1136, 1160, 1211, 1312, 1433, 1903
BmuI	ACTGGG	1 cut(s)	1261
BoxI	GACNNNNGTC	1 cut(s)	626
BpiI	GAAGAC	3 cut(s)	1053, 1499, 1586
BpmI	CTGGAG	1 cut(s)	281
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	644, 650
BpuMI	CCSGG	2 cut(s)	1717, 1921
BsaHI	GRCGYC	1 cut(s)	547
BsaJI	CCNNGG	2 cut(s)	1428, 1828
BsaWI	WCCGGW	1 cut(s)	1943
BsaXI	ACNNNNNCTCC	4 cut(s)	817, 847, 849, 879
Bsc4I	CCNNNNNNNGG	1 cut(s)	1975
Bse1I	ACTGG	4 cut(s)	264, 301, 718, 1256
BseBI	CCWGG	6 cut(s)	371, 1076, 1376, 1861, 1970, 2087
BseDI	CCNNGG	2 cut(s)	1428, 1828
BseGI	GGATG	6 cut(s)	224, 297, 1012, 1424, 1619, 1940
BseLI	CCNNNNNNNGG	1 cut(s)	1975
BseMII	CTCAG	5 cut(s)	12, 162, 417, 833, 1866
BseNI	ACTGG	4 cut(s)	264, 301, 718, 1256
BseRI	GAGGAG	4 cut(s)	38, 325, 948, 1939
BseSI	GKGCMC	1 cut(s)	1437
BseXI	GCAGC	6 cut(s)	1100, 1401, 1430, 1433, 1648, 2002
BsgI	GTGCAG	2 cut(s)	1408, 1710
Bsh1236I	CGCG	1 cut(s)	963
BshFI	GGCC	6 cut(s)	369, 464, 1092, 1658, 1723, 1761
BshNI	GGYRCC	2 cut(s)	546, 2037
BsiHKAI	GWGCWC	1 cut(s)	1883
BsiSI	CCGG	4 cut(s)	1199, 1716, 1920, 1944
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	1975
BsmAI	GTCTC	5 cut(s)	218, 224, 1073, 1763, 1921
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	6 cut(s)	369, 464, 1092, 1658, 1723, 1761
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	1437, 1883, 2000
Bsp143I	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
BspACI	CCGC	2 cut(s)	1117, 1659
BspANI	GGCC	6 cut(s)	369, 464, 1092, 1658, 1723, 1761
BspCNI	CTCAG	5 cut(s)	13, 161, 418, 832, 1867
BspFNI	CGCG	1 cut(s)	963
BspLI	GGNNCC	6 cut(s)	368, 548, 870, 1231, 1948, 2039
BspMAI	CTGCAG	1 cut(s)	1420
BspMI	ACCTGC	1 cut(s)	1618
BspPI	GGATC	7 cut(s)	416, 863, 876, 926, 1447, 1598, 2074
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	546, 2037
BspTI	CTTAAG	1 cut(s)	1522
BsrI	ACTGG	4 cut(s)	264, 301, 718, 1256
BssECI	CCNNGG	2 cut(s)	1428, 1828
BssMI	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
BssNI	GRCGYC	1 cut(s)	547
BssSI	CACGAG	1 cut(s)	1351
BssT1I	CCWWGG	2 cut(s)	1428, 1828
Bst2BI	CACGAG	1 cut(s)	1351
Bst2UI	CCWGG	6 cut(s)	371, 1076, 1376, 1861, 1970, 2087
Bst4CI	ACNGT	8 cut(s)	235, 628, 1168, 1480, 1585, 1856, 2012, 2029
Bst6I	CTCTTC	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	547
BstAFI	CTTAAG	1 cut(s)	1522
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	5 cut(s)	75, 751, 1147, 1725, 1820
BstF5I	GGATG	6 cut(s)	224, 297, 1012, 1424, 1619, 1940
BstFNI	CGCG	1 cut(s)	963
BstH2I	RGCGCY	2 cut(s)	550, 1961
BstHHI	GCGC	3 cut(s)	549, 1151, 1960
BstKTI	GATC	9 cut(s)	424, 501, 525, 871, 934, 1345, 1442, 1606, 2069
BstMAI	GTCTC	5 cut(s)	218, 224, 1073, 1763, 1921
BstMBI	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 661, 1035, 1913
BstNI	CCWGG	6 cut(s)	371, 1076, 1376, 1861, 1970, 2087
BstNSI	RCATGY	1 cut(s)	1687
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSCI	CCNGG	8 cut(s)	369, 1074, 1374, 1715, 1859, 1919, 1968, 2085
BstSFI	CTRYAG	3 cut(s)	1395, 1416, 2028
BstSLI	GKGCMC	1 cut(s)	1437
BstUI	CGCG	1 cut(s)	963
BstV1I	GCAGC	6 cut(s)	1100, 1401, 1430, 1433, 1648, 2002
BstV2I	GAAGAC	3 cut(s)	1053, 1499, 1586
BstX2I	RGATCY	3 cut(s)	498, 868, 1603
BstYI	RGATCY	3 cut(s)	498, 868, 1603
BsuI	GTATCC	2 cut(s)	808, 1382
BsuRI	GGCC	6 cut(s)	369, 464, 1092, 1658, 1723, 1761
BtrI	CACGTC	1 cut(s)	1497
BtsCI	GGATG	6 cut(s)	224, 297, 1012, 1424, 1619, 1940
BtsI	GCAGTG	2 cut(s)	215, 1287
BtsIMutI	CAGTG	6 cut(s)	156, 215, 753, 1053, 1287, 2017
BveI	ACCTGC	1 cut(s)	1618
Cac8I	GCNNGC	5 cut(s)	75, 751, 1147, 1725, 1820
CaiI	CAGNNNCTG	2 cut(s)	1113, 1866
CfoI	GCGC	3 cut(s)	549, 1151, 1960
Cfr13I	GGNCC	4 cut(s)	367, 1090, 1179, 1760
CsiI	ACCWGGT	2 cut(s)	1859, 1968
Csp6I	GTAC	4 cut(s)	158, 236, 530, 1857
CviQI	GTAC	4 cut(s)	158, 236, 530, 1857
DinI	GGCGCC	1 cut(s)	548
DpnI	GATC	9 cut(s)	423, 500, 524, 870, 933, 1344, 1441, 1605, 2068
DpnII	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
DraI	TTTAAA	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	2012
EaeI	YGGCCR	1 cut(s)	1656
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	1881
Eco130I	CCWWGG	2 cut(s)	1428, 1828
Eco147I	AGGCCT	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	1883, 2000
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	1179
Eco53kI	GAGCTC	1 cut(s)	1881
Eco57I	CTGAAG	2 cut(s)	665, 1176
EcoICRI	GAGCTC	1 cut(s)	1881
EcoRII	CCWGG	6 cut(s)	369, 1074, 1374, 1859, 1968, 2085
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	2 cut(s)	1428, 1828
EcoT38I	GRGCYC	2 cut(s)	1883, 2000
EgeI	GGCGCC	1 cut(s)	548
EheI	GGCGCC	1 cut(s)	548
ErhI	CCWWGG	2 cut(s)	1428, 1828
FalI	AAGNNNNNCTT	2 cut(s)	1055, 1087
FaqI	GGGAC	1 cut(s)	329
Fnu4HI	GCNGC	8 cut(s)	1114, 1117, 1390, 1419, 1422, 1659, 1662, 2016
FokI	GGATG	6 cut(s)	211, 284, 1019, 1411, 1606, 1927
FriOI	GRGCYC	2 cut(s)	1883, 2000
Fsp4HI	GCNGC	8 cut(s)	1114, 1117, 1390, 1419, 1422, 1659, 1662, 2016
FspBI	CTAG	1 cut(s)	1206
GlaI	GCGC	3 cut(s)	548, 1150, 1959
GluI	GCNGC	8 cut(s)	1114, 1117, 1390, 1419, 1422, 1659, 1662, 2016
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	2 cut(s)	550, 1961
HaeIII	GGCC	6 cut(s)	369, 464, 1092, 1658, 1723, 1761
HapII	CCGG	4 cut(s)	1199, 1716, 1920, 1944
HhaI	GCGC	3 cut(s)	549, 1151, 1960
Hin1I	GRCGYC	1 cut(s)	547
Hin6I	GCGC	3 cut(s)	547, 1149, 1958
HinP1I	GCGC	3 cut(s)	547, 1149, 1958
HincII	GTYRAC	3 cut(s)	631, 1069, 1194
HindII	GTYRAC	3 cut(s)	631, 1069, 1194
HindIII	AAGCTT	1 cut(s)	75
HinfI	GANTC	5 cut(s)	57, 83, 1187, 1678, 1733
HpaII	CCGG	4 cut(s)	1199, 1716, 1920, 1944
Hpy166II	GTNNAC	3 cut(s)	631, 1069, 1194
Hpy188III	TCNNGA	8 cut(s)	425, 821, 836, 872, 1131, 1206, 1576, 1848
Hpy8I	GTNNAC	3 cut(s)	631, 1069, 1194
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	1 cut(s)	1495
HpyCH4III	ACNGT	8 cut(s)	235, 628, 1168, 1480, 1585, 1856, 2012, 2029
HpyCH4IV	ACGT	3 cut(s)	285, 507, 1496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 661, 1035, 1913
HpySE526I	ACGT	3 cut(s)	285, 507, 1496
Hsp92I	GRCGYC	1 cut(s)	547
HspAI	GCGC	3 cut(s)	547, 1149, 1958
KasI	GGCGCC	1 cut(s)	546
Kzo9I	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
LmnI	GCTCC	5 cut(s)	25, 857, 1229, 1751, 1815
Lsp1109I	GCAGC	6 cut(s)	1100, 1401, 1430, 1433, 1648, 2002
LweI	GCATC	7 cut(s)	736, 1136, 1160, 1211, 1312, 1433, 1903
MabI	ACCWGGT	2 cut(s)	1859, 1968
MaeI	CTAG	1 cut(s)	1206
MaeII	ACGT	3 cut(s)	285, 507, 1496
MaeIII	GTNAC	7 cut(s)	538, 739, 1242, 1411, 1868, 1936, 2089
MalI	GATC	9 cut(s)	423, 500, 524, 870, 933, 1344, 1441, 1605, 2068
MboI	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
MflI	RGATCY	3 cut(s)	498, 868, 1603
MhlI	GDGCHC	3 cut(s)	1437, 1883, 2000
Mly113I	GGCGCC	1 cut(s)	547
MlyI	GAGTC	2 cut(s)	1181, 1727
MmeI	TCCRAC	2 cut(s)	672, 1562
MroXI	GAANNNNTTC	2 cut(s)	730, 1362
MslI	CAYNNNNRTG	1 cut(s)	1986
MspA1I	CMGCKG	1 cut(s)	1661
MspCI	CTTAAG	1 cut(s)	1522
MspI	CCGG	4 cut(s)	1199, 1716, 1920, 1944
MspR9I	CCNGG	8 cut(s)	371, 1076, 1376, 1717, 1861, 1921, 1970, 2087
MvaI	CCWGG	6 cut(s)	371, 1076, 1376, 1861, 1970, 2087
MvnI	CGCG	1 cut(s)	963
MwoI	GCNNNNNNNGC	4 cut(s)	389, 661, 1035, 1913
NarI	GGCGCC	1 cut(s)	547
NciI	CCSGG	2 cut(s)	1717, 1921
NdeII	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
NlaIV	GGNNCC	6 cut(s)	368, 548, 870, 1231, 1948, 2039
NmuCI	GTSAC	3 cut(s)	538, 1242, 1868
NspI	RCATGY	1 cut(s)	1687
NspV	TTCGAA	1 cut(s)	254
PaqCI	CACCTGC	1 cut(s)	1618
PceI	AGGCCT	1 cut(s)	464
PciI	ACATGT	1 cut(s)	1683
PdmI	GAANNNNTTC	2 cut(s)	730, 1362
PfeI	GAWTC	3 cut(s)	57, 83, 1678
PfoI	TCCNGGA	2 cut(s)	1074, 1374
PkrI	GCNGC	8 cut(s)	1115, 1118, 1391, 1420, 1423, 1660, 1663, 2017
PleI	GAGTC	2 cut(s)	1181, 1727
PluTI	GGCGCC	1 cut(s)	550
PpsI	GAGTC	2 cut(s)	1181, 1727
PscI	ACATGT	1 cut(s)	1683
PshAI	GACNNNNGTC	1 cut(s)	626
PshBI	ATTAAT	1 cut(s)	140
Psp124BI	GAGCTC	1 cut(s)	1883
Psp6I	CCWGG	6 cut(s)	369, 1074, 1374, 1859, 1968, 2085
PspGI	CCWGG	6 cut(s)	369, 1074, 1374, 1859, 1968, 2085
PspN4I	GGNNCC	6 cut(s)	368, 548, 870, 1231, 1948, 2039
PspPI	GGNCC	4 cut(s)	367, 1090, 1179, 1760
PstI	CTGCAG	1 cut(s)	1420
PstNI	CAGNNNCTG	2 cut(s)	1113, 1866
PsuI	RGATCY	3 cut(s)	498, 868, 1603
RsaI	GTAC	4 cut(s)	159, 237, 531, 1858
RsaNI	GTAC	4 cut(s)	158, 236, 530, 1857
RseI	CAYNNNNRTG	1 cut(s)	1986
SacI	GAGCTC	1 cut(s)	1883
SatI	GCNGC	8 cut(s)	1114, 1117, 1390, 1419, 1422, 1659, 1662, 2016
Sau3AI	GATC	9 cut(s)	421, 498, 522, 868, 931, 1342, 1439, 1603, 2066
Sau96I	GGNCC	4 cut(s)	367, 1090, 1179, 1760
ScaI	AGTACT	1 cut(s)	237
SchI	GAGTC	2 cut(s)	1181, 1727
ScrFI	CCNGG	8 cut(s)	371, 1076, 1376, 1717, 1861, 1921, 1970, 2087
SduI	GDGCHC	3 cut(s)	1437, 1883, 2000
SexAI	ACCWGGT	2 cut(s)	1859, 1968
SfaNI	GCATC	7 cut(s)	736, 1136, 1160, 1211, 1312, 1433, 1903
SfcI	CTRYAG	3 cut(s)	1395, 1416, 2028
SfoI	GGCGCC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	254
SinI	GGWCC	1 cut(s)	1179
SmiMI	CAYNNNNRTG	1 cut(s)	1986
SmlI	CTYRAG	3 cut(s)	659, 665, 1522
SmoI	CTYRAG	3 cut(s)	659, 665, 1522
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	1117, 1659
SspDI	GGCGCC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	1206
SstI	GAGCTC	1 cut(s)	1883
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	8 cut(s)	369, 1074, 1374, 1715, 1859, 1919, 1968, 2085
StyI	CCWWGG	2 cut(s)	1428, 1828
TaaI	ACNGT	8 cut(s)	235, 628, 1168, 1480, 1585, 1856, 2012, 2029
TaiI	ACGT	3 cut(s)	288, 510, 1499
TaqI	TCGA	4 cut(s)	81, 254, 521, 1320
TaqII	GACCGA	1 cut(s)	1284
TatI	WGTACW	1 cut(s)	235
TauI	GCSGC	2 cut(s)	1119, 1661
TfiI	GAWTC	3 cut(s)	57, 83, 1678
TscAI	CASTG	6 cut(s)	156, 215, 760, 1060, 1294, 2017
TseFI	GTSAC	3 cut(s)	538, 1242, 1868
TseI	GCWGC	6 cut(s)	1113, 1389, 1418, 1421, 1661, 2015
Tsp45I	GTSAC	3 cut(s)	538, 1242, 1868
TspDTI	ATGAA	8 cut(s)	210, 617, 762, 1035, 1461, 1505, 1521, 1914
TspGWI	ACGGA	3 cut(s)	113, 1452, 1939
TspRI	CASTG	6 cut(s)	156, 215, 760, 1060, 1294, 2017
Vha464I	CTTAAG	1 cut(s)	1522
VpaK11BI	GGWCC	1 cut(s)	1179
VspI	ATTAAT	1 cut(s)	140
XapI	RAATTY	3 cut(s)	484, 1058, 1361
XbaI	TCTAGA	1 cut(s)	1205
XceI	RCATGY	1 cut(s)	1687
XmnI	GAANNNNTTC	2 cut(s)	730, 1362
XspI	CTAG	1 cut(s)	1206
ZrmI	AGTACT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.