Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005199

Physical Location & Seq

Genomic Coordinates Reverse (-)

2669151 .. 2674554

Gene Structure 5404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGAGAATATGCAGTATGCCGAGGAGCTTGTGAGGGAGTTTTTAGTGTTTAGGGGGTTCACGAGCACTTTGCAAGCTTTTGATTCCGAGTTGTCGACAGATATAGGCAAAGGGTTTCAAGTGGAGAAGATAATGGAGTTGATATTCTCGGTGTATGTACCGAAGTTTCAGGCAGAGAAGTTAGTTGGGTTGTTGAGTTTCTTTAAGCAGTGTCTTTCTTCGTCTTCGGAGACTGTGCTTTTGGCTACTTTGTCGAAGATGGAGGTCTCTATTTTGCGGTACTATGTTGTCAATGCCGTAAATGCAGGGAGGAGGGATAAGGTTTTGGAGTTCTTTGGTATGAAGGGGAATGATTTGTTGCGAAGGAGCCAGGATTGGACTCCATGGTTTGCCATTCCATATGTAAAGCAGCCAAGCGCTGATCCTGAGTTTCGTATATATTTCTCAAAGGAATGGGATGAGGCCTTGCGTTTATCTAAAATTCCCTTAACTAAACCACGTATGCCAGCCTTGTTGAAAATTAGCTCAGAGAAGACTACTGTTAACCGTTTAAAAAGAGACATCAAGCAACTGAATCTCAAGTTGTCAGAACTTCAAGCTTTTTTGGAGGAAAAAGATGGTCAGATATACCAGTTAAGAAGTAATGCTTCATCGGTAGTGGATGAAAGCATTGAACGGACCAAGAGCTCATCAAGTGTAGTGCCTGAGGAAAATCATCTTACATCTAAAGATGCTCAGGAAACTAGCCCTCTTGCTACTTTTCAAATCGGGGAAGCAGAGGTTGGTCGAGATCAGGGTGCTGGATCCATTGGAATTCAACCAGAATTAAAAATATCCGAGTCCAATAATGATTTAAACTATTCATCGAGTCTTCGTGTGGGAGTTGGTGGAACTGGTGATACCATTCAACTGTTCCAGGATGGTTCCTATAATGAAAATGGCACGGAAAGCCGTGTAGAAGATTTCCCTGAAGTTGAAGTTGACTTTCAGGAGACATTTTTGGGCCACACAAGTCCGATCAGTTGCTGCCGGTTCTCTGCATCTGGAAACAATATAGCCAGTGCATCTGACGATGGTACAGTGAGGATATGGACATATGACTCATCAACTCCAGCATCCAGAAATGCAACCATTTATTGTGGGGCCAAGATTATGTCACTTGACTGGGAATGTAAATCCGACCGATTGCTTCTCATAGGCACTGCTGATAGAGGCATTAAAGCATGGAATGTCGATGCAAAGAGAGTTGTCTGTGATCTTCAGACAAGTGGACAATTTCCAAGTGTGTTGGATATAAAATGCAGCCCTGTAGAGCCAATTTTTGTTTCTGCTGCAGCATCCAAGGGGCATGGAACGAGTTATGTTGATAGTCTGGGTTTTGCTTCGTTAACTGTGTGGAACATGAGGACATGGAAGGCTATGACAGTCCTTCCTCTTGGTAAAGATCCACCTGCAATTACATCTCTTAGTTTCAATCACAATGGGAAGATCTTAGCAGCCGCTGCAACTGATGGAATGATTCACATGTTTGCTGAGATTTTTGAATGGAGCTTGCAAAACCAAGGTCAAGTCCTTTGGTCAAGGAACTGTAGCAGGTTCTGTGGCCCTGAGAGCTCAAAAGATAGCAGACATGAAATGGCTTTGGATGCTAATGGGAGGAGACTGTTGGTAACTTCTGCTTCAGTAAGAGCACCCGTTTATCAGGTTAGAGGTCATGCTACAAATGGGCTGAGAACTCTCCCACATAGTGCTGCCATAACTACTGATGACTCCGTCGGAGTAGCAGAATCAAAGTCTGTCTATTTGTTCTTGGTGTGCTTGAGGTTGAACGAGGTTCCTTATCGGTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

617

Amino Acids

68.47

Weight (kDa)

5.71

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH_Armc9	PF23138	54 - 158	1.8e-14	Armc9, CTLH-like domain
WD40_Prp19	PF24814	320 - 521	2e-12	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	321 - 510	1.5e-13	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	326 - 417	3.4e-08	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	327 - 445	2e-08	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	328 - 425	6.1e-06	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	329 - 423	6.9e-09	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	331 - 368	3.5e-07	WDR5 beta-propeller domain
WD40	PF00400	331 - 364	2e-10	WD domain, G-beta repeat
Beta-prop_THOC3	PF25174	336 - 425	6.9e-12	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005199)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700
malus_domestica	MD01G1212200.v1.1 MD07G1282600.v1.1
prunus_persica	Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1
pyrus_communis	pycom01g22250
rosa_chinensis	RchiOBHm_Chr1g0379661
rosa_laevigata	RLG00000026372
rosa_multiflora	Rmu_sc0013028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279980
rosa_rugosa	Rorug01G0413900 Rorug01G0414000.1 Rorug01G0414100.1 Rorug01G0414200.1
rosa_samantha	Rh1AG437700 Rh1BG393900 Rh1CG406800 Rh1DG424800
rosa_wichuraiana	Rw1G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1459
Acc36I	ACCTGC	2 cut(s)	1459, 1584
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	2 cut(s)	277, 1500
AclWI	GGATC	4 cut(s)	416, 798, 811, 1439
AcsI	RAATTY	2 cut(s)	480, 813
AcuI	CTGAAG	3 cut(s)	990, 1244, 1665
AdeI	CACNNNGTG	1 cut(s)	1748
AfaI	GTAC	3 cut(s)	159, 281, 1078
AfeI	AGCGCT	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	1524
AjnI	CCWGG	2 cut(s)	369, 915
AjuI	GAANNNNNNNTTGG	4 cut(s)	765, 797, 1309, 1341
AluBI	AGCT	7 cut(s)	28, 77, 525, 599, 687, 1551, 1614
AluI	AGCT	7 cut(s)	28, 77, 525, 599, 687, 1551, 1614
Alw21I	GWGCWC	4 cut(s)	68, 689, 1616, 1693
Alw26I	GTCTC	5 cut(s)	224, 271, 552, 986, 1654
AlwI	GGATC	4 cut(s)	416, 798, 811, 1439
AlwNI	CAGNNNCTG	3 cut(s)	1026, 1502, 1599
Aor51HI	AGCGCT	1 cut(s)	418
AoxI	GGCC	4 cut(s)	462, 1003, 1143, 1603
ApeKI	GCWGC	8 cut(s)	409, 1026, 1302, 1331, 1334, 1496, 1502, 1751
ApoI	RAATTY	2 cut(s)	480, 813
ArsI	GACNNNNNNTTYG	4 cut(s)	223, 255, 1549, 1581
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	4 cut(s)	678, 1003, 1143, 1604
AsuHPI	GGTGA	1 cut(s)	908
AvaII	GGWCC	1 cut(s)	678
AxyI	CCTNAGG	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	803
BanII	GRGCYC	2 cut(s)	689, 1616
BauI	CACGAG	1 cut(s)	61
BbsI	GAAGAC	3 cut(s)	216, 539, 863
Bbv12I	GWGCWC	4 cut(s)	68, 689, 1616, 1693
BbvI	GCAGC	8 cut(s)	421, 1013, 1314, 1318, 1346, 1489, 1508, 1738
BccI	CCATC	5 cut(s)	253, 611, 914, 1067, 1505
BceAI	ACGGC	2 cut(s)	281, 936
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	2 cut(s)	371, 917
BcoDI	GTCTC	5 cut(s)	224, 271, 552, 986, 1654
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	3 cut(s)	1308, 1332, 1588
BfoI	RGCGCY	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	1459, 1584
BglII	AGATCT	1 cut(s)	1488
BisI	GCNGC	9 cut(s)	410, 1027, 1303, 1332, 1335, 1497, 1500, 1503, 1752
BlsI	GCNGC	9 cut(s)	411, 1028, 1304, 1333, 1336, 1498, 1501, 1504, 1753
Bme1390I	CCNGG	2 cut(s)	371, 917
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	4 cut(s)	678, 1003, 1143, 1604
BmiI	GGNNCC	5 cut(s)	368, 805, 925, 1144, 1836
BmrFI	CCNGG	2 cut(s)	371, 917
BmrI	ACTGGG	1 cut(s)	1174
BmsI	GCATC	7 cut(s)	721, 1049, 1073, 1124, 1225, 1346, 1636
BmuI	ACTGGG	1 cut(s)	1174
BpiI	GAAGAC	3 cut(s)	216, 539, 863
BpmI	CTGGAG	1 cut(s)	1095
Bpu10I	CCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	563, 1840
BsaAI	YACGTR	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	4 cut(s)	21, 383, 1341, 1561
Bse118I	RCCGGY	1 cut(s)	1029
Bse1I	ACTGG	4 cut(s)	631, 898, 1059, 1169
Bse21I	CCTNAGG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	371, 917
BseDI	CCNNGG	4 cut(s)	21, 383, 1341, 1561
BseGI	GGATG	6 cut(s)	463, 667, 925, 1115, 1337, 1651
BseMII	CTCAG	7 cut(s)	417, 540, 696, 749, 1524, 1599, 1721
BseNI	ACTGG	4 cut(s)	631, 898, 1059, 1169
BseRI	GAGGAG	3 cut(s)	38, 325, 1672
BseXI	GCAGC	8 cut(s)	421, 1013, 1314, 1318, 1346, 1489, 1508, 1738
Bsh1285I	CGRYCG	1 cut(s)	1183
BshFI	GGCC	4 cut(s)	464, 1005, 1145, 1605
BsiEI	CGRYCG	1 cut(s)	1183
BsiHKAI	GWGCWC	4 cut(s)	68, 689, 1616, 1693
BsiSI	CCGG	1 cut(s)	1030
BsmAI	GTCTC	5 cut(s)	224, 271, 552, 986, 1654
BsnI	GGCC	4 cut(s)	464, 1005, 1145, 1605
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	4 cut(s)	68, 689, 1616, 1693
Bsp143I	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	2 cut(s)	277, 1500
BspANI	GGCC	4 cut(s)	464, 1005, 1145, 1605
BspCNI	CTCAG	7 cut(s)	418, 539, 697, 748, 1525, 1600, 1722
BspLI	GGNNCC	5 cut(s)	368, 805, 925, 1144, 1836
BspMAI	CTGCAG	1 cut(s)	1336
BspMI	ACCTGC	2 cut(s)	1459, 1584
BspPI	GGATC	4 cut(s)	416, 798, 811, 1439
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	1029
BsrI	ACTGG	4 cut(s)	631, 898, 1059, 1169
BssAI	RCCGGY	1 cut(s)	1029
BssECI	CCNNGG	4 cut(s)	21, 383, 1341, 1561
BssMI	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	3 cut(s)	383, 1341, 1561
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	371, 917
Bst4CI	ACNGT	9 cut(s)	235, 541, 548, 912, 1081, 1393, 1426, 1589, 1665
BstAPI	GCANNNNNTGC	1 cut(s)	1502
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	75, 507, 1553
BstDEI	CTNAG	9 cut(s)	426, 526, 705, 735, 1466, 1492, 1533, 1608, 1730
BstDSI	CCRYGG	1 cut(s)	383
BstF5I	GGATG	6 cut(s)	463, 667, 925, 1115, 1337, 1651
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	7 cut(s)	424, 793, 806, 1020, 1258, 1447, 1491
BstMAI	GTCTC	5 cut(s)	224, 271, 552, 986, 1654
BstMBI	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
BstMCI	CGRYCG	1 cut(s)	1183
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 948, 1502, 1611, 1646
BstNI	CCWGG	2 cut(s)	371, 917
BstNSI	RCATGY	1 cut(s)	1528
BstSCI	CCNGG	2 cut(s)	369, 915
BstSFI	CTRYAG	3 cut(s)	1308, 1332, 1588
BstV1I	GCAGC	8 cut(s)	421, 1013, 1314, 1318, 1346, 1489, 1508, 1738
BstV2I	GAAGAC	3 cut(s)	216, 539, 863
BstX2I	RGATCY	3 cut(s)	803, 1444, 1488
BstYI	RGATCY	3 cut(s)	803, 1444, 1488
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	4 cut(s)	464, 1005, 1145, 1605
BtgI	CCRYGG	1 cut(s)	383
BtsCI	GGATG	6 cut(s)	463, 667, 925, 1115, 1337, 1651
BtsI	GCAGTG	2 cut(s)	215, 1200
BtsIMutI	CAGTG	4 cut(s)	215, 1066, 1086, 1200
BveI	ACCTGC	2 cut(s)	1459, 1584
Cac8I	GCNNGC	3 cut(s)	75, 507, 1553
CaiI	CAGNNNCTG	3 cut(s)	1026, 1502, 1599
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	1029
Cfr13I	GGNCC	4 cut(s)	678, 1003, 1143, 1604
Csp6I	GTAC	3 cut(s)	158, 280, 1077
CviAII	CATG	8 cut(s)	384, 1224, 1349, 1402, 1410, 1525, 1631, 1715
CviQI	GTAC	3 cut(s)	158, 280, 1077
DdeI	CTNAG	9 cut(s)	426, 526, 705, 735, 1466, 1492, 1533, 1608, 1730
DpnI	GATC	7 cut(s)	423, 792, 805, 1019, 1257, 1446, 1490
DpnII	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
DraI	TTTAAA	2 cut(s)	552, 855
DraIII	CACNNNGTG	1 cut(s)	1748
Ecl136II	GAGCTC	2 cut(s)	687, 1614
Eco130I	CCWWGG	3 cut(s)	383, 1341, 1561
Eco147I	AGGCCT	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	689, 1616
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	678
Eco47III	AGCGCT	1 cut(s)	418
Eco53kI	GAGCTC	2 cut(s)	687, 1614
Eco57I	CTGAAG	3 cut(s)	990, 1244, 1665
Eco81I	CCTNAGG	1 cut(s)	705
EcoICRI	GAGCTC	2 cut(s)	687, 1614
EcoRI	GAATTC	1 cut(s)	813
EcoRII	CCWGG	2 cut(s)	369, 915
EcoT14I	CCWWGG	3 cut(s)	383, 1341, 1561
EcoT38I	GRGCYC	2 cut(s)	689, 1616
ErhI	CCWWGG	3 cut(s)	383, 1341, 1561
FaeI	CATG	8 cut(s)	387, 1227, 1352, 1405, 1413, 1528, 1634, 1718
FalI	AAGNNNNNCTT	2 cut(s)	631, 663
FatI	CATG	8 cut(s)	383, 1223, 1348, 1401, 1409, 1524, 1630, 1714
FauNDI	CATATG	2 cut(s)	400, 1096
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	9 cut(s)	410, 1027, 1303, 1332, 1335, 1497, 1500, 1503, 1752
FokI	GGATG	6 cut(s)	470, 674, 932, 1102, 1324, 1658
FriOI	GRGCYC	2 cut(s)	689, 1616
Fsp4HI	GCNGC	9 cut(s)	410, 1027, 1303, 1332, 1335, 1497, 1500, 1503, 1752
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	9 cut(s)	410, 1027, 1303, 1332, 1335, 1497, 1500, 1503, 1752
GsuI	CTGGAG	1 cut(s)	1095
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	464, 1005, 1145, 1605
HapII	CCGG	1 cut(s)	1030
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	8 cut(s)	387, 1227, 1352, 1405, 1413, 1528, 1634, 1718
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	4 cut(s)	96, 544, 982, 1389
HindII	GTYRAC	4 cut(s)	96, 544, 982, 1389
HindIII	AAGCTT	2 cut(s)	75, 597
HinfI	GANTC	9 cut(s)	83, 379, 574, 839, 868, 1100, 1519, 1769, 1787
HpaI	GTTAAC	2 cut(s)	544, 1389
HpaII	CCGG	1 cut(s)	1030
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	6 cut(s)	60, 96, 544, 982, 1271, 1389
Hpy188III	TCNNGA	7 cut(s)	61, 425, 737, 788, 989, 1044, 1119
Hpy8I	GTNNAC	6 cut(s)	60, 96, 544, 982, 1271, 1389
Hpy99I	CGWCG	1 cut(s)	1778
HpyAV	CCTTC	4 cut(s)	337, 357, 1408, 1439
HpyCH4III	ACNGT	9 cut(s)	235, 541, 548, 912, 1081, 1393, 1426, 1589, 1665
HpyCH4IV	ACGT	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 948, 1502, 1611, 1646
HpyF3I	CTNAG	9 cut(s)	426, 526, 705, 735, 1466, 1492, 1533, 1608, 1730
HpySE526I	ACGT	1 cut(s)	499
Hsp92II	CATG	8 cut(s)	387, 1227, 1352, 1405, 1413, 1528, 1634, 1718
HspAI	GCGC	1 cut(s)	417
KspAI	GTTAAC	2 cut(s)	544, 1389
Kzo9I	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
LmnI	GCTCC	3 cut(s)	25, 366, 1548
Lsp1109I	GCAGC	8 cut(s)	421, 1013, 1314, 1318, 1346, 1489, 1508, 1738
LweI	GCATC	7 cut(s)	721, 1049, 1073, 1124, 1225, 1346, 1636
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	1155, 1669
MalI	GATC	7 cut(s)	423, 792, 805, 1019, 1257, 1446, 1490
MboI	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
MboII	GAAGA	9 cut(s)	139, 210, 216, 268, 544, 863, 971, 1250, 1498
MflI	RGATCY	3 cut(s)	803, 1444, 1488
MhlI	GDGCHC	4 cut(s)	68, 689, 1616, 1693
MluCI	AATT	7 cut(s)	480, 519, 813, 824, 1274, 1317, 1455
MlyI	GAGTC	5 cut(s)	373, 848, 877, 1094, 1763
MmeI	TCCRAC	3 cut(s)	1203, 1269, 1756
MseI	TTAA	9 cut(s)	204, 488, 543, 551, 635, 827, 854, 1218, 1388
MspA1I	CMGCKG	1 cut(s)	1502
MspI	CCGG	1 cut(s)	1030
MspR9I	CCNGG	2 cut(s)	371, 917
MvaI	CCWGG	2 cut(s)	371, 917
MwoI	GCNNNNNNNGC	5 cut(s)	302, 948, 1502, 1611, 1646
NcoI	CCATGG	1 cut(s)	383
NdeI	CATATG	2 cut(s)	400, 1096
NdeII	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
NlaIII	CATG	8 cut(s)	387, 1227, 1352, 1405, 1413, 1528, 1634, 1718
NlaIV	GGNNCC	5 cut(s)	368, 805, 925, 1144, 1836
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	1155
NspI	RCATGY	1 cut(s)	1528
PaqCI	CACCTGC	1 cut(s)	1459
PceI	AGGCCT	1 cut(s)	464
PciI	ACATGT	1 cut(s)	1524
PfeI	GAWTC	4 cut(s)	83, 574, 1519, 1787
PflFI	GACNNNGTC	1 cut(s)	1772
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	9 cut(s)	411, 1028, 1304, 1333, 1336, 1498, 1501, 1504, 1753
PleI	GAGTC	5 cut(s)	373, 847, 876, 1094, 1763
PpsI	GAGTC	5 cut(s)	373, 847, 876, 1094, 1763
Ppu21I	YACGTR	1 cut(s)	500
PscI	ACATGT	1 cut(s)	1524
Psp124BI	GAGCTC	2 cut(s)	689, 1616
Psp6I	CCWGG	2 cut(s)	369, 915
PspGI	CCWGG	2 cut(s)	369, 915
PspN4I	GGNNCC	5 cut(s)	368, 805, 925, 1144, 1836
PspPI	GGNCC	4 cut(s)	678, 1003, 1143, 1604
PsrI	GAACNNNNNNTAC	2 cut(s)	883, 915
PstI	CTGCAG	1 cut(s)	1336
PstNI	CAGNNNCTG	3 cut(s)	1026, 1502, 1599
PsuI	RGATCY	3 cut(s)	803, 1444, 1488
PsyI	GACNNNGTC	1 cut(s)	1772
RsaI	GTAC	3 cut(s)	159, 281, 1078
RsaNI	GTAC	3 cut(s)	158, 280, 1077
SacI	GAGCTC	2 cut(s)	689, 1616
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	9 cut(s)	204, 488, 543, 551, 635, 827, 854, 1218, 1388
SatI	GCNGC	9 cut(s)	410, 1027, 1303, 1332, 1335, 1497, 1500, 1503, 1752
Sau3AI	GATC	7 cut(s)	421, 790, 803, 1017, 1255, 1444, 1488
Sau96I	GGNCC	4 cut(s)	678, 1003, 1143, 1604
SchI	GAGTC	5 cut(s)	373, 848, 877, 1094, 1763
ScrFI	CCNGG	2 cut(s)	371, 917
SduI	GDGCHC	4 cut(s)	68, 689, 1616, 1693
SfaNI	GCATC	7 cut(s)	721, 1049, 1073, 1124, 1225, 1346, 1636
SfcI	CTRYAG	3 cut(s)	1308, 1332, 1588
SinI	GGWCC	1 cut(s)	678
SmlI	CTYRAG	2 cut(s)	578, 1819
SmoI	CTYRAG	2 cut(s)	578, 1819
Sse9I	AATT	7 cut(s)	480, 519, 813, 824, 1274, 1317, 1455
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	2 cut(s)	277, 1500
SspMI	CTAG	1 cut(s)	744
SstI	GAGCTC	2 cut(s)	689, 1616
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	369, 915
StyI	CCWWGG	3 cut(s)	383, 1341, 1561
TaaI	ACNGT	9 cut(s)	235, 541, 548, 912, 1081, 1393, 1426, 1589, 1665
TaiI	ACGT	1 cut(s)	502
TaqI	TCGA	5 cut(s)	95, 254, 787, 866, 1233
TaqII	GACCGA	1 cut(s)	1197
TasI	AATT	7 cut(s)	480, 519, 813, 824, 1274, 1317, 1455
TauI	GCSGC	1 cut(s)	1502
TfiI	GAWTC	4 cut(s)	83, 574, 1519, 1787
Tru1I	TTAA	9 cut(s)	204, 488, 543, 551, 635, 827, 854, 1218, 1388
Tru9I	TTAA	9 cut(s)	204, 488, 543, 551, 635, 827, 854, 1218, 1388
TscAI	CASTG	4 cut(s)	215, 1066, 1086, 1207
TseFI	GTSAC	1 cut(s)	1155
TseI	GCWGC	8 cut(s)	409, 1026, 1302, 1331, 1334, 1496, 1502, 1751
Tsp45I	GTSAC	1 cut(s)	1155
TspDTI	ATGAA	6 cut(s)	356, 639, 678, 852, 948, 1647
TspGWI	ACGGA	3 cut(s)	691, 959, 1762
TspRI	CASTG	4 cut(s)	215, 1066, 1086, 1207
Tth111I	GACNNNGTC	1 cut(s)	1772
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	2 cut(s)	480, 813
XceI	RCATGY	1 cut(s)	1528
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.