Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005199

Physical Location & Seq

Genomic Coordinates Reverse (-)

51820472 .. 51823014

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0413900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGCCTGCATTCCCATTCTTTCTGGTTCAAGATTTTCTCGTCCTCCTCCAAGGACTCAAAGAAAACCCATTTGATCAAAACATGTGGGAAGTTCAATCGGATTGGTACTCCCCAACTCGCATGAACAGCAGCCCAAATACCCAGTACGAATTTCCGGGTGATCGGTTTATACCCAATAGGAGTTTGATGGATCTTGATCAAGCCCAGAGCTTATTGACGAACAGAACTGTACCGAATCGGAACTCGAATTTCAATGAGGCATACAGACAGAAATTGCAGGACCAACTGACTTTGGATTCAGATGGGAACCCTTTTAAGATGTTGGTTTTTAGGGGAAGCCCAAAATCTAGTAGAAAACCGCTTCGTTGTGTTGATGAGATGCGCCGGAGTGATGAATTTGATAGTAATATGATCAAACCTACTCAGCTTCGAAGTTTGCCTAAGGGAGAAAGTAGAGTTCTGGACGCACCAAACATGAGAAATGACTTTTACATGAACATCATGGACTGGGGAAAGAACAATGTTCTTGCAGTTGCTCTGGGCCCCGATTTATACCTCTGGAACTCGGAGACAGTAAATGTACGTAAGCTGTTTCATGTCAATGAGAATGATCACCCCACAAGTTTAGCTTGGTCTCAAGATGCCAAATATTTGGCAGTTGGATATAAGGGCTCGAAACTCCAACTCTGGGATGCTGAGGCTTCCAAGCTGGTTAGAAGCCTAAAAGGCCATAATCGCAGGGTAGCGACCATTACTTGGAATGGTCACACATTAACATCAGGCAGCCGAGACCGGTCCATTATTAACCATGATGTCAGAGCAAGAAACAATGTGACTTGCCATTTACGTGCACACTCTCAAGAAGTCTGTGGCTTGAAATGGTCGGAAACAGGCAATTTATTAGCAAGCGGTGGCAATGAAAACCTCTTGTACATTTGGGAATCCTCGAGAATGAACTCATCGAAATACTTGTATTGTTTCAAAGACCATTGTGCTGCAGTCAAGGCGCTTGCTTGGTGTCCTTATCAGTCTGGTGTACTTGCCTCTGGAGGAGGCACAGAAGATGGGTGTATTAAGTTATGGAATACACAAATGGGGATCTGTATCAACACCATTGATACCAACTCTCAAGTCTGTGGGTTGGAGTGGAACAGGCATCACAAAGAGATACTGAGTGGCCATGGTTATAGTCCGAGAGAGCAGATCAAGAATCAGCTATGCCTCTGGAGGTATCCTTCCATGGAAAAAGTGGGGAACTTGAAGCGCCACACCTCCAGAGTCCTTCAGCTTTCTCAGAGCCCTGATGGGTTAACTTTAGTATCAGCTGTTGCAGACGGGACTCTTCGGTTTTGGAATATCTTTGGACCCCCATGTGCTGACAATTCAAGGCTCTCAGCTCTGGACAGTTTTTTGTCTAATAAGACTTCTCCAATAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

479

Amino Acids

54.51

Weight (kDa)

8.93

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	154 - 451	3.4e-119	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	165 - 255	1.1e-06	WDHD1 first WD40 domain
Beta-prop_WDR19_1st	PF23389	168 - 288	1.7e-10	WDR19 first beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	173 - 324	2.5e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_Aladin	PF25460	174 - 347	1.5e-07	Aladin seven-bladed propeller
Beta-prop_WDR36-Utp21_1st	PF25171	174 - 313	1.1e-07	WDR36/Utp21 first beta-propeller
WD40_Gbeta	PF25391	174 - 362	1.4e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	176 - 276	3.1e-14	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	182 - 322	6.2e-14	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_IFT140_1st	PF23383	183 - 268	8.7e-06	IFT140 first beta-propeller
Beta-prop_WDR5	PF25175	185 - 324	6.9e-20	WDR5 beta-propeller domain
ANAPC4_WD40	PF12894	193 - 254	1.6e-07	Anaphase-promoting complex subunit 4 WD40 domain
WD40_Prp19	PF24814	197 - 350	1e-14	Prp19 WD40 domain
WDR55	PF24796	204 - 393	1.2e-07	WDR55
Beta-prop_THOC3	PF25174	207 - 278	1.4e-09	THOC3 beta-propeller domain
Beta-prop_RIG_2nd	PF23775	208 - 366	5.4e-06	RIG second beta-propeller
Beta-prop_WDR3_2nd	PF25172	208 - 316	3.2e-08	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	209 - 452	9e-08	MABP1/WDR62 second WD40 domain
WD40_Prp19	PF24814	256 - 453	9.2e-16	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	276 - 394	4.3e-14	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	278 - 369	1.9e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	279 - 371	2.3e-06	TEP-1 second beta-propeller
EIF3I	PF24805	282 - 391	7.8e-06	EIF3I
Beta-prop_WDR5	PF25175	282 - 454	9e-20	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	285 - 394	8e-18	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005199)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700
malus_domestica	MD01G1212200.v1.1 MD07G1282600.v1.1
prunus_persica	Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1
pyrus_communis	pycom01g22250
rosa_chinensis	RchiOBHm_Chr1g0379661
rosa_laevigata	RLG00000026372
rosa_multiflora	Rmu_sc0013028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279980
rosa_rugosa	Rorug01G0413900 Rorug01G0414000.1 Rorug01G0414100.1 Rorug01G0414200.1
rosa_samantha	Rh1AG437700 Rh1BG393900 Rh1CG406800 Rh1DG424800
rosa_wichuraiana	Rw1G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	756
AciI	CCGC	2 cut(s)	359, 909
AclWI	GGATC	2 cut(s)	198, 1106
AcoI	YGGCCR	1 cut(s)	1177
AcsI	RAATTY	3 cut(s)	149, 247, 395
AcuI	CTGAAG	1 cut(s)	1268
AfaI	GTAC	6 cut(s)	107, 146, 231, 582, 932, 1038
AfiI	CCNNNNNNNGG	2 cut(s)	688, 756
AflIII	ACRYGT	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	792
AgsI	TTSAA	7 cut(s)	29, 95, 253, 877, 982, 1261, 1386
AluBI	AGCT	9 cut(s)	210, 427, 589, 629, 709, 1216, 1288, 1325, 1397
AluI	AGCT	9 cut(s)	210, 427, 589, 629, 709, 1216, 1288, 1325, 1397
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	3 cut(s)	563, 639, 783
Alw44I	GTGCAC	1 cut(s)	849
AlwI	GGATC	2 cut(s)	198, 1106
Ama87I	CYCGRG	1 cut(s)	946
AoxI	GGCC	3 cut(s)	541, 727, 1177
ApaI	GGGCCC	1 cut(s)	545
ApaLI	GTGCAC	1 cut(s)	849
ApeKI	GCWGC	3 cut(s)	129, 783, 995
ApoI	RAATTY	3 cut(s)	149, 247, 395
AsiGI	ACCGGT	1 cut(s)	792
AspLEI	GCGC	3 cut(s)	384, 1009, 1266
AspS9I	GGNCC	5 cut(s)	280, 541, 542, 795, 1364
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	170, 605
AsuII	TTCGAA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	946
AvaII	GGWCC	3 cut(s)	280, 795, 1364
AxyI	CCTNAGG	1 cut(s)	441
BaeGI	GKGCMC	2 cut(s)	545, 853
BaeI	ACNNNNGTAYC	2 cut(s)	1302, 1335
BalI	TGGCCA	1 cut(s)	1179
BanII	GRGCYC	3 cut(s)	545, 674, 1301
Bbv12I	GWGCWC	1 cut(s)	853
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	141, 795, 982
BccI	CCATC	4 cut(s)	181, 296, 1058, 1298
BciVI	GTATCC	1 cut(s)	1242
BclI	TGATCA	4 cut(s)	73, 196, 411, 610
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	3 cut(s)	563, 639, 783
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	2 cut(s)	1010, 1267
BfuI	GTATCC	1 cut(s)	1242
BglI	GCCNNNNNGGC	1 cut(s)	726
BisI	GCNGC	3 cut(s)	130, 784, 996
BlsI	GCNGC	3 cut(s)	131, 785, 997
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	3 cut(s)	280, 795, 1364
BmeT110I	CYCGRG	1 cut(s)	946
BmgT120I	GGNCC	5 cut(s)	280, 541, 542, 795, 1364
BmiI	GGNNCC	4 cut(s)	308, 543, 544, 1366
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	2 cut(s)	136, 517
BmsI	GCATC	4 cut(s)	369, 631, 682, 1165
BmuI	ACTGGG	2 cut(s)	136, 517
BpmI	CTGGAG	3 cut(s)	1068, 1246, 1258
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	3 cut(s)	621, 843, 1113
BpuMI	CCSGG	1 cut(s)	156
BsaAI	YACGTR	2 cut(s)	584, 848
BsaBI	GATNNNNATC	2 cut(s)	195, 1103
BsaI	GGTCTC	2 cut(s)	639, 783
BsaJI	CCNNGG	3 cut(s)	49, 1180, 1239
BsaWI	WCCGGW	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	2 cut(s)	688, 756
Bse118I	RCCGGY	1 cut(s)	792
Bse1I	ACTGG	2 cut(s)	142, 512
Bse21I	CCTNAGG	1 cut(s)	441
Bse3DI	GCAATG	1 cut(s)	922
Bse8I	GATNNNNATC	2 cut(s)	195, 1103
BseDI	CCNNGG	3 cut(s)	49, 1180, 1239
BseGI	GGATG	1 cut(s)	697
BseJI	GATNNNNATC	2 cut(s)	195, 1103
BseLI	CCNNNNNNNGG	2 cut(s)	688, 756
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	5 cut(s)	437, 687, 1163, 1307, 1407
BseNI	ACTGG	2 cut(s)	142, 512
BseRI	GAGGAG	2 cut(s)	35, 1065
BseSI	GKGCMC	2 cut(s)	545, 853
BseXI	GCAGC	3 cut(s)	141, 795, 982
BshFI	GGCC	3 cut(s)	543, 729, 1179
BshTI	ACCGGT	1 cut(s)	792
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	946
BsiSI	CCGG	3 cut(s)	155, 385, 793
BslFI	GGGAC	1 cut(s)	1351
BslI	CCNNNNNNNGG	2 cut(s)	688, 756
BsmAI	GTCTC	3 cut(s)	563, 639, 783
BsmFI	GGGAC	1 cut(s)	1351
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	3 cut(s)	543, 729, 1179
Bso31I	GGTCTC	2 cut(s)	639, 783
BsoBI	CYCGRG	1 cut(s)	946
Bsp119I	TTCGAA	1 cut(s)	430
Bsp120I	GGGCCC	1 cut(s)	541
Bsp1286I	GDGCHC	4 cut(s)	545, 674, 853, 1301
Bsp1407I	TGTACA	1 cut(s)	930
Bsp143I	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
Bsp19I	CCATGG	2 cut(s)	1180, 1239
BspACI	CCGC	2 cut(s)	359, 909
BspANI	GGCC	3 cut(s)	543, 729, 1179
BspCNI	CTCAG	5 cut(s)	436, 688, 1164, 1306, 1406
BspLI	GGNNCC	4 cut(s)	308, 543, 544, 1366
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	2 cut(s)	198, 1106
BspT104I	TTCGAA	1 cut(s)	430
BspTNI	GGTCTC	2 cut(s)	639, 783
BsrDI	GCAATG	1 cut(s)	922
BsrFI	RCCGGY	1 cut(s)	792
BsrGI	TGTACA	1 cut(s)	930
BsrI	ACTGG	2 cut(s)	142, 512
BssAI	RCCGGY	1 cut(s)	792
BssECI	CCNNGG	3 cut(s)	49, 1180, 1239
BssMI	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
BssT1I	CCWWGG	3 cut(s)	49, 1180, 1239
Bst4CI	ACNGT	3 cut(s)	229, 574, 1406
Bst6I	CTCTTC	1 cut(s)	1347
BstAUI	TGTACA	1 cut(s)	930
BstBAI	YACGTR	2 cut(s)	584, 848
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	6, 907, 1011
BstDEI	CTNAG	6 cut(s)	423, 441, 696, 1172, 1293, 1393
BstDSI	CCRYGG	2 cut(s)	1180, 1239
BstF5I	GGATG	1 cut(s)	697
BstH2I	RGCGCY	2 cut(s)	1010, 1267
BstHHI	GCGC	3 cut(s)	384, 1009, 1266
BstKTI	GATC	8 cut(s)	76, 163, 193, 199, 414, 613, 1101, 1206
BstMAI	GTCTC	3 cut(s)	563, 639, 783
BstMBI	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 726, 735, 1004
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	996
BstSLI	GKGCMC	2 cut(s)	545, 853
BstSNI	TACGTA	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	141, 795, 982
BstX2I	RGATCY	2 cut(s)	190, 1098
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	2 cut(s)	190, 1098
Bsu36I	CCTNAGG	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	1242
BsuRI	GGCC	3 cut(s)	543, 729, 1179
BtgI	CCRYGG	2 cut(s)	1180, 1239
BtsCI	GGATG	1 cut(s)	697
Cac8I	GCNNGC	3 cut(s)	6, 907, 1011
CfoI	GCGC	3 cut(s)	384, 1009, 1266
Cfr10I	RCCGGY	1 cut(s)	792
Cfr13I	GGNCC	5 cut(s)	280, 541, 542, 795, 1364
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	6 cut(s)	106, 145, 230, 581, 931, 1037
CspAI	ACCGGT	1 cut(s)	792
CspCI	CAANNNNNGTGG	2 cut(s)	65, 100
CviQI	GTAC	6 cut(s)	106, 145, 230, 581, 931, 1037
DdeI	CTNAG	6 cut(s)	423, 441, 696, 1172, 1293, 1393
DpnI	GATC	8 cut(s)	75, 162, 192, 198, 413, 612, 1100, 1205
DpnII	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
EaeI	YGGCCR	1 cut(s)	1177
Eam1104I	CTCTTC	1 cut(s)	1347
EarI	CTCTTC	1 cut(s)	1347
Eco105I	TACGTA	1 cut(s)	584
Eco130I	CCWWGG	3 cut(s)	49, 1180, 1239
Eco24I	GRGCYC	3 cut(s)	545, 674, 1301
Eco31I	GGTCTC	2 cut(s)	639, 783
Eco47I	GGWCC	3 cut(s)	280, 795, 1364
Eco57I	CTGAAG	1 cut(s)	1268
Eco81I	CCTNAGG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	542
EcoT14I	CCWWGG	3 cut(s)	49, 1180, 1239
EcoT38I	GRGCYC	3 cut(s)	545, 674, 1301
ErhI	CCWWGG	3 cut(s)	49, 1180, 1239
FalI	AAGNNNNNCTT	2 cut(s)	613, 645
FaqI	GGGAC	1 cut(s)	1351
FbaI	TGATCA	4 cut(s)	73, 196, 411, 610
Fnu4HI	GCNGC	3 cut(s)	130, 784, 996
FokI	GGATG	1 cut(s)	704
FriOI	GRGCYC	3 cut(s)	545, 674, 1301
Fsp4HI	GCNGC	3 cut(s)	130, 784, 996
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	3 cut(s)	383, 1008, 1265
GluI	GCNGC	3 cut(s)	130, 784, 996
GsuI	CTGGAG	3 cut(s)	1068, 1246, 1258
HaeII	RGCGCY	2 cut(s)	1010, 1267
HaeIII	GGCC	3 cut(s)	543, 729, 1179
HapII	CCGG	3 cut(s)	155, 385, 793
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	3 cut(s)	384, 1009, 1266
Hin6I	GCGC	3 cut(s)	382, 1007, 1264
HinP1I	GCGC	3 cut(s)	382, 1007, 1264
HincII	GTYRAC	1 cut(s)	1311
HindII	GTYRAC	1 cut(s)	1311
HinfI	GANTC	7 cut(s)	54, 235, 296, 941, 1210, 1278, 1339
HpaI	GTTAAC	1 cut(s)	1311
HpaII	CCGG	3 cut(s)	155, 385, 793
HphI	GGTGA	2 cut(s)	170, 605
Hpy166II	GTNNAC	3 cut(s)	851, 1037, 1311
Hpy188I	TCNGA	8 cut(s)	100, 240, 301, 568, 818, 886, 1194, 1296
Hpy8I	GTNNAC	3 cut(s)	851, 1037, 1311
HpyAV	CCTTC	2 cut(s)	1245, 1292
HpyCH4III	ACNGT	3 cut(s)	229, 574, 1406
HpyCH4IV	ACGT	2 cut(s)	583, 847
HpyCH4V	TGCA	6 cut(s)	8, 277, 530, 851, 998, 1331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 726, 735, 1004
HpyF3I	CTNAG	6 cut(s)	423, 441, 696, 1172, 1293, 1393
HpySE526I	ACGT	2 cut(s)	583, 847
HspAI	GCGC	3 cut(s)	382, 1007, 1264
Ksp22I	TGATCA	4 cut(s)	73, 196, 411, 610
KspAI	GTTAAC	1 cut(s)	1311
Kzo9I	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
Lsp1109I	GCAGC	3 cut(s)	141, 795, 982
LweI	GCATC	4 cut(s)	369, 631, 682, 1165
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	2 cut(s)	583, 847
MaeIII	GTNAC	2 cut(s)	764, 832
MalI	GATC	8 cut(s)	75, 162, 192, 198, 413, 612, 1100, 1205
MboI	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
MboII	GAAGA	2 cut(s)	1073, 1334
MflI	RGATCY	2 cut(s)	190, 1098
MhlI	GDGCHC	4 cut(s)	545, 674, 853, 1301
MlsI	TGGCCA	1 cut(s)	1179
MluCI	AATT	6 cut(s)	149, 247, 272, 395, 895, 1381
MluNI	TGGCCA	1 cut(s)	1179
MlyI	GAGTC	3 cut(s)	48, 1287, 1333
MmeI	TCCRAC	4 cut(s)	640, 706, 864, 1122
Mox20I	TGGCCA	1 cut(s)	1179
MscI	TGGCCA	1 cut(s)	1179
MseI	TTAA	5 cut(s)	315, 773, 804, 1074, 1310
MslI	CAYNNNNRTG	2 cut(s)	600, 846
Msp20I	TGGCCA	1 cut(s)	1179
MspA1I	CMGCKG	1 cut(s)	1325
MspI	CCGG	3 cut(s)	155, 385, 793
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	126, 726, 735, 1004
NciI	CCSGG	1 cut(s)	156
NcoI	CCATGG	2 cut(s)	1180, 1239
NdeII	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
NlaIV	GGNNCC	4 cut(s)	308, 543, 544, 1366
NmeAIII	GCCGAG	1 cut(s)	812
NmuCI	GTSAC	2 cut(s)	764, 832
NspI	RCATGY	1 cut(s)	85
NspV	TTCGAA	1 cut(s)	430
PaeR7I	CTCGAG	1 cut(s)	946
PciI	ACATGT	1 cut(s)	81
PctI	GAATGC	1 cut(s)	8
PfeI	GAWTC	4 cut(s)	235, 296, 941, 1210
PflMI	CCANNNNNTGG	1 cut(s)	756
PinAI	ACCGGT	1 cut(s)	792
PkrI	GCNGC	3 cut(s)	131, 785, 997
PleI	GAGTC	3 cut(s)	48, 1286, 1333
PpsI	GAGTC	3 cut(s)	48, 1286, 1333
Ppu21I	YACGTR	2 cut(s)	584, 848
PscI	ACATGT	1 cut(s)	81
PspN4I	GGNNCC	4 cut(s)	308, 543, 544, 1366
PspOMI	GGGCCC	1 cut(s)	541
PspPI	GGNCC	5 cut(s)	280, 541, 542, 795, 1364
PstI	CTGCAG	1 cut(s)	1000
PsuI	RGATCY	2 cut(s)	190, 1098
PvuII	CAGCTG	1 cut(s)	1325
RsaI	GTAC	6 cut(s)	107, 146, 231, 582, 932, 1038
RsaNI	GTAC	6 cut(s)	106, 145, 230, 581, 931, 1037
RseI	CAYNNNNRTG	2 cut(s)	600, 846
SaqAI	TTAA	5 cut(s)	315, 773, 804, 1074, 1310
SatI	GCNGC	3 cut(s)	130, 784, 996
Sau3AI	GATC	8 cut(s)	73, 160, 190, 196, 411, 610, 1098, 1203
Sau96I	GGNCC	5 cut(s)	280, 541, 542, 795, 1364
SchI	GAGTC	3 cut(s)	48, 1287, 1333
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	4 cut(s)	545, 674, 853, 1301
SfaNI	GCATC	4 cut(s)	369, 631, 682, 1165
SfcI	CTRYAG	1 cut(s)	996
Sfr274I	CTCGAG	1 cut(s)	946
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	3 cut(s)	280, 795, 1364
SlaI	CTCGAG	1 cut(s)	946
SmiMI	CAYNNNNRTG	2 cut(s)	600, 846
SmlI	CTYRAG	4 cut(s)	636, 858, 946, 1128
SmoI	CTYRAG	4 cut(s)	636, 858, 946, 1128
SnaBI	TACGTA	1 cut(s)	584
Sse9I	AATT	6 cut(s)	149, 247, 272, 395, 895, 1381
SsiI	CCGC	2 cut(s)	359, 909
SspI	AATATT	1 cut(s)	650
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	3 cut(s)	49, 1180, 1239
TaaI	ACNGT	3 cut(s)	229, 574, 1406
TaiI	ACGT	2 cut(s)	586, 850
TaqI	TCGA	5 cut(s)	245, 430, 674, 947, 962
TasI	AATT	6 cut(s)	149, 247, 272, 395, 895, 1381
TatI	WGTACW	2 cut(s)	930, 1036
TfiI	GAWTC	4 cut(s)	235, 296, 941, 1210
Tru1I	TTAA	5 cut(s)	315, 773, 804, 1074, 1310
Tru9I	TTAA	5 cut(s)	315, 773, 804, 1074, 1310
TseFI	GTSAC	2 cut(s)	764, 832
TseI	GCWGC	3 cut(s)	129, 783, 995
Tsp45I	GTSAC	2 cut(s)	764, 832
TspDTI	ATGAA	6 cut(s)	137, 408, 509, 584, 933, 968
Van91I	CCANNNNNTGG	1 cut(s)	756
VneI	GTGCAC	1 cut(s)	849
VpaK11BI	GGWCC	3 cut(s)	280, 795, 1364
XapI	RAATTY	3 cut(s)	149, 247, 395
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1246
XhoI	CTCGAG	1 cut(s)	946
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.