Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005199

Physical Location & Seq

Genomic Coordinates Forward (+)

66143331 .. 66149493

Gene Structure 6163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGGAGAATATGCAGTATGCTGAGGAGCTTGTGAGGGAGTTTCTAGTGTTTAGGGGGTTTACTAGCACTTTGCAAGCTTTTGATTCCGAGTTGTCGACGGATATAGGCAAAGGGTTTCAAGTGGAGAAGATAATGGAGTTGATATTCTCGGTGTATGTACCGAAGTTTCAGGCAGAGAAGTTAGTTGGGTTGTTGAGTTTCTTCAAGCAGTGTCTTTCTTCATCGCCGGAGACTGTGCTTTTGGCTACTTTGTCGAAGATGGAGGTCTCTATTTTGCGGTACTATGTTGTAAATGCCGTAAATGCAGGGAGGAGGGATAAGGTTTTGGAGTTCTTTGGTATGAAGGGGAATGATTTGTTGCAAAGGAGCCAGGATTGGACTCCATGGTTTGCCATTCCATATGTAAAGAAGCCAAGCGCTGATCCTGAGTTTCGTATATATTTCTCAAAGGAATGGTATGAGGCCTTGCGTTTATCTGTGAGGAATTTTTTTAGTGAGATCTTCAATGGTACTCATATCCTTCAATATACCTTGTTGAAAATTAGCTCAGAGAAGACTACTGTTAACCGTTTAAAAAGAGACATCAAGCAACTGAATCTCAAGTTGTCAGAACTTCAAGCTTTGTTGGAGGAAAAAGATGGTCAGATATACCAGTTAAGAAGTAATGCTTCATCAGTAGTGGATGAAAGCATCGAACGAACCAAGAGCTCATCAAGTGTAGTGCCCGAGGAAAATCATCTTTCATCTAAAGATACTCAGGAAACTAGCCCTCTTGCTACTTTTCAAATCGGGGAAGCAGAGGTTGGTCGAGATCAGGGTGCTGGATCCATTGGAATTCAACCAGAATTAAAAATATCTGAGTCCAATAATGATTCAAACTATTCATCGAGTCTTCGTGTGGGAGTTGGTGGAACTGGTGATACCATTCAACTGTTCCAGGATGGTTCCTATAATGAAAATGGCACGGAAAGCCGTGTAGAAGATTTCCCTGAAGTTGAAGTTGACTTTCAGGAGACATTTTTGGGCCACACAAGTCCGATCAGTTGCTGCCGGTTCTCTGCATCTGGAAACAATATAGCCAGTGCATCTGACGATGGTACAGTGAGGATATGGACATATGACTCATCAACTCCAGCATCCAGAAATGCAACCATTTATTGTGGAGCCAAGATTATGTCACTTGACTGGGAATGTAAATCTGACCGATTGCTTCTCATAGGCACTGCTGATAGAGGCATTAAAGCATGGAATGTCGATGCAAAGAGAGTTGTCTGTGATCTTCAGACAAGTGGACAATTTCCAAGTGTGTTGGATATAAAATGCAGCCCTGTAGAGCCAATTTTTGTTTCTGCTGCAGCATCCAAGGGGCATGGAACGAGTTATGTTGATAGTCTGGGTTTTGCTTCATTAACTGTGTGGAACATGAGGACATGGAAGGCTATGACAGTCCTTCCTCTTGGTAAAGATCCACCTGCAATTACATCTCTTAGTTTCAATCACAATGGGAAGATCTTAGCAGCCGCTGCAACTGATGGAATGATTCACATGTTTGATATGTCTGCGGGTCAACAAATAACTGGGTGGCCTGCACATGACTCTGCTATAAGCTCCATTCTTTTTGGGCCTGATGAGACTAGCATTTTCAGTTTGGGAGTGGATGGAAAGATTTTTGAATGGAGCTTGCAAAACCAAGGTCAAGTCCTTTGGTCAAGGAACTGTAGCAGGTTCTGTGGCCCTGAGAGCTCAAAAGATTGCAGACATGAAATGGCTTTGGATGCTAATGGGAGGAGACTATTGGTAACTTCTGCTTCAGTAAGAGCACCCATTTATCAGGTTAGAGGTCATGCTACAAATGGGTTGAGAACTCTCCCACACAGTGCTGCCATAACTACTGTAGATTGGCACCCAACTTTGCCCATTTTCTTAACAGGATCTGCTGATAACTCTGTCCGAAACCATAGACAACAAACAAGCCTCAGAAACCCTGACTTCAAAAAACTGAAACCTCCCGCATTAGAGCCTGCTCGGACTTCAAGCTCTCGAGTAAGATCCTTTCCCCACACTCTAGCAGCTTCTAAGATTATGTCAAAACAAGACAATCTACCACTCATAACTACGAACCGCACGAATATAAGTATGGTCTTGACTCTTGAACCTAAGAACGCTGAGATGCCAATGACTTTGAACTTTGAAGAGCTAATTCGTCATAAGTTGCTCACTTCCTCTACTGAGTTTCTGAACAGGTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005829 GO:0006810 GO:0008150 GO:0010008 GO:0012505 GO:0016020 GO:0016192 GO:0016482 GO:0019207 GO:0019216 GO:0019220 GO:0019222 GO:0019898 GO:0030234 GO:0031090 GO:0031312 GO:0031313 GO:0031323 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0035014 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043549 GO:0043550 GO:0043551 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051174 GO:0051179 GO:0051234 GO:0051338 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0080090 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098927 GO:1903725

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

750

Amino Acids

83.42

Weight (kDa)

6.13

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH_Armc9	PF23138	54 - 169	9.7e-18	Armc9, CTLH-like domain
WD40_CDC20-Fz	PF24807	328 - 436	3.5e-10	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	328 - 519	6.8e-13	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	333 - 425	2.6e-08	TEP-1 second beta-propeller
Beta-prop_WDR3_1st	PF25173	334 - 452	2.7e-08	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	337 - 562	6.3e-11	Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st	PF24817	337 - 430	9.8e-09	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	338 - 375	4.4e-07	WDR5 beta-propeller domain
WD40	PF00400	338 - 371	2.5e-10	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	341 - 564	1.1e-07	Aladin seven-bladed propeller
Beta-prop_THOC3	PF25174	343 - 562	9.4e-22	THOC3 beta-propeller domain
WD40_Prp19	PF24814	390 - 606	2.5e-09	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	410 - 567	3.9e-07	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	464 - 563	4.2e-07	WDR3 second beta-propeller domain
WD40_CDC20-Fz	PF24807	469 - 651	7.7e-12	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	469 - 565	8.5e-12	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	470 - 651	1.3e-14	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	480 - 560	4.1e-06	WDR36/Utp21 first beta-propeller
ANAPC4_WD40	PF12894	485 - 540	4.3e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40_WDHD1_1st	PF24817	492 - 612	9.6e-12	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005199)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700 FvH4_7g30700
malus_domestica	MD01G1212200.v1.1 MD07G1282600.v1.1
prunus_persica	Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1 Prupe.2G304700_v2.0.a1
pyrus_communis	pycom01g22250
rosa_chinensis	RchiOBHm_Chr1g0379661
rosa_laevigata	RLG00000026372
rosa_multiflora	Rmu_sc0013028.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279980
rosa_rugosa	Rorug01G0413900 Rorug01G0414000.1 Rorug01G0414100.1 Rorug01G0414200.1
rosa_samantha	Rh1AG437700 Rh1BG393900 Rh1CG406800 Rh1DG424800
rosa_wichuraiana	Rw1G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1480
Acc36I	ACCTGC	2 cut(s)	1480, 1713
AccB1I	GGYRCC	1 cut(s)	1902
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	5 cut(s)	277, 1521, 1562, 2010, 2122
AclWI	GGATC	6 cut(s)	416, 819, 832, 1460, 1939, 2043
AcsI	RAATTY	2 cut(s)	484, 834
AcuI	CTGAAG	3 cut(s)	1011, 1265, 1794
AdeI	CACNNNGTG	1 cut(s)	1877
AfaI	GTAC	4 cut(s)	159, 281, 511, 1099
AfeI	AGCGCT	1 cut(s)	418
AflIII	ACRYGT	1 cut(s)	1545
AjnI	CCWGG	2 cut(s)	369, 936
AjuI	GAANNNNNNNTTGG	4 cut(s)	786, 818, 1330, 1362
Alw21I	GWGCWC	3 cut(s)	710, 1745, 1822
Alw26I	GTCTC	6 cut(s)	224, 271, 573, 1007, 1625, 1783
AlwI	GGATC	6 cut(s)	416, 819, 832, 1460, 1939, 2043
AlwNI	CAGNNNCTG	4 cut(s)	1047, 1523, 1728, 1934
Ama87I	CYCGRG	2 cut(s)	725, 2040
Aor51HI	AGCGCT	1 cut(s)	418
AoxI	GGCC	5 cut(s)	462, 1024, 1583, 1622, 1732
ApeKI	GCWGC	8 cut(s)	1047, 1323, 1352, 1355, 1517, 1523, 1880, 2069
ApoI	RAATTY	2 cut(s)	484, 834
ArsI	GACNNNNNNTTYG	4 cut(s)	223, 255, 1678, 1710
Asp700I	GAANNNNTTC	1 cut(s)	2243
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	3 cut(s)	1024, 1622, 1733
AsuHPI	GGTGA	1 cut(s)	929
AvaI	CYCGRG	2 cut(s)	725, 2040
BaeGI	GKGCMC	1 cut(s)	726
BamHI	GGATCC	1 cut(s)	824
BanI	GGYRCC	1 cut(s)	1902
BanII	GRGCYC	2 cut(s)	710, 1745
BbsI	GAAGAC	2 cut(s)	560, 884
Bbv12I	GWGCWC	3 cut(s)	710, 1745, 1822
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	8 cut(s)	1034, 1335, 1339, 1367, 1510, 1529, 1867, 2081
BccI	CCATC	6 cut(s)	253, 632, 935, 1088, 1526, 1652
BceAI	ACGGC	2 cut(s)	281, 957
BciT130I	CCWGG	2 cut(s)	371, 938
BcoDI	GTCTC	6 cut(s)	224, 271, 573, 1007, 1625, 1783
BfaI	CTAG	5 cut(s)	44, 63, 765, 1635, 2066
BfmI	CTRYAG	4 cut(s)	1329, 1353, 1717, 1893
BfoI	RGCGCY	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	1480, 1713
BglII	AGATCT	2 cut(s)	498, 1509
BisI	GCNGC	9 cut(s)	1048, 1324, 1353, 1356, 1518, 1521, 1524, 1881, 2070
BlsI	GCNGC	9 cut(s)	1049, 1325, 1354, 1357, 1519, 1522, 1525, 1882, 2071
Bme1390I	CCNGG	2 cut(s)	371, 938
BmeT110I	CYCGRG	2 cut(s)	725, 2040
BmgT120I	GGNCC	3 cut(s)	1024, 1622, 1733
BmiI	GGNNCC	5 cut(s)	368, 826, 946, 1165, 1904
BmrFI	CCNGG	2 cut(s)	371, 938
BmrI	ACTGGG	2 cut(s)	1195, 1587
BmsI	GCATC	8 cut(s)	699, 1070, 1094, 1145, 1246, 1367, 1765, 2160
BmuI	ACTGGG	2 cut(s)	1195, 1587
BpiI	GAAGAC	2 cut(s)	560, 884
BpmI	CTGGAG	1 cut(s)	1116
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	4 cut(s)	383, 726, 1362, 1690
Bse118I	RCCGGY	1 cut(s)	1050
Bse1I	ACTGG	5 cut(s)	652, 919, 1080, 1190, 1582
BseBI	CCWGG	2 cut(s)	371, 938
BseDI	CCNNGG	4 cut(s)	383, 726, 1362, 1690
BseGI	GGATG	6 cut(s)	688, 946, 1136, 1358, 1663, 1780
BseMII	CTCAG	9 cut(s)	12, 417, 561, 770, 849, 1728, 1990, 2157, 2220
BseNI	ACTGG	5 cut(s)	652, 919, 1080, 1190, 1582
BseRI	GAGGAG	3 cut(s)	38, 325, 1801
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	8 cut(s)	1034, 1335, 1339, 1367, 1510, 1529, 1867, 2081
BsgI	GTGCAG	1 cut(s)	1572
BshFI	GGCC	5 cut(s)	464, 1026, 1585, 1624, 1734
BshNI	GGYRCC	1 cut(s)	1902
BsiHKAI	GWGCWC	3 cut(s)	710, 1745, 1822
BsiHKCI	CYCGRG	2 cut(s)	725, 2040
BsiSI	CCGG	2 cut(s)	227, 1051
BsmAI	GTCTC	6 cut(s)	224, 271, 573, 1007, 1625, 1783
BsnI	GGCC	5 cut(s)	464, 1026, 1585, 1624, 1734
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	2 cut(s)	725, 2040
Bsp1286I	GDGCHC	4 cut(s)	710, 726, 1745, 1822
Bsp19I	CCATGG	1 cut(s)	383
BspACI	CCGC	5 cut(s)	277, 1521, 1562, 2010, 2122
BspANI	GGCC	5 cut(s)	464, 1026, 1585, 1624, 1734
BspCNI	CTCAG	9 cut(s)	13, 418, 560, 769, 850, 1729, 1989, 2158, 2221
BspLI	GGNNCC	5 cut(s)	368, 826, 946, 1165, 1904
BspMAI	CTGCAG	1 cut(s)	1357
BspMI	ACCTGC	2 cut(s)	1480, 1713
BspPI	GGATC	6 cut(s)	416, 819, 832, 1460, 1939, 2043
BspQI	GCTCTTC	1 cut(s)	2187
BspT107I	GGYRCC	1 cut(s)	1902
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	1050
BsrI	ACTGG	5 cut(s)	652, 919, 1080, 1190, 1582
BssAI	RCCGGY	1 cut(s)	1050
BssECI	CCNNGG	4 cut(s)	383, 726, 1362, 1690
BssT1I	CCWWGG	3 cut(s)	383, 1362, 1690
Bst2UI	CCWGG	2 cut(s)	371, 938
Bst6I	CTCTTC	1 cut(s)	2187
BstAPI	GCANNNNNTGC	1 cut(s)	1523
BstC8I	GCNNGC	4 cut(s)	75, 1587, 1682, 2022
BstDSI	CCRYGG	1 cut(s)	383
BstF5I	GGATG	6 cut(s)	688, 946, 1136, 1358, 1663, 1780
BstH2I	RGCGCY	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	419
BstMAI	GTCTC	6 cut(s)	224, 271, 573, 1007, 1625, 1783
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 969, 1523, 1740, 1775
BstNI	CCWGG	2 cut(s)	371, 938
BstNSI	RCATGY	1 cut(s)	1549
BstSCI	CCNGG	2 cut(s)	369, 936
BstSFI	CTRYAG	4 cut(s)	1329, 1353, 1717, 1893
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	8 cut(s)	1034, 1335, 1339, 1367, 1510, 1529, 1867, 2081
BstV2I	GAAGAC	2 cut(s)	560, 884
BstX2I	RGATCY	6 cut(s)	498, 824, 1465, 1509, 1931, 2048
BstYI	RGATCY	6 cut(s)	498, 824, 1465, 1509, 1931, 2048
BsuRI	GGCC	5 cut(s)	464, 1026, 1585, 1624, 1734
BtgI	CCRYGG	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	6 cut(s)	688, 946, 1136, 1358, 1663, 1780
BtsI	GCAGTG	2 cut(s)	215, 1221
BtsIMutI	CAGTG	5 cut(s)	215, 1087, 1107, 1221, 1882
BveI	ACCTGC	2 cut(s)	1480, 1713
Cac8I	GCNNGC	4 cut(s)	75, 1587, 1682, 2022
CaiI	CAGNNNCTG	4 cut(s)	1047, 1523, 1728, 1934
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	1050
Cfr13I	GGNCC	3 cut(s)	1024, 1622, 1733
Csp6I	GTAC	4 cut(s)	158, 280, 510, 1098
CviAII	CATG	9 cut(s)	384, 1245, 1370, 1423, 1431, 1546, 1592, 1760, 1844
CviQI	GTAC	4 cut(s)	158, 280, 510, 1098
DraI	TTTAAA	1 cut(s)	573
DraIII	CACNNNGTG	1 cut(s)	1877
Eam1104I	CTCTTC	1 cut(s)	2187
EarI	CTCTTC	1 cut(s)	2187
Ecl136II	GAGCTC	2 cut(s)	708, 1743
Eco130I	CCWWGG	3 cut(s)	383, 1362, 1690
Eco147I	AGGCCT	1 cut(s)	464
Eco24I	GRGCYC	2 cut(s)	710, 1745
Eco31I	GGTCTC	1 cut(s)	271
Eco47III	AGCGCT	1 cut(s)	418
Eco53kI	GAGCTC	2 cut(s)	708, 1743
Eco57I	CTGAAG	3 cut(s)	1011, 1265, 1794
Eco88I	CYCGRG	2 cut(s)	725, 2040
EcoICRI	GAGCTC	2 cut(s)	708, 1743
EcoRI	GAATTC	1 cut(s)	834
EcoRII	CCWGG	2 cut(s)	369, 936
EcoT14I	CCWWGG	3 cut(s)	383, 1362, 1690
EcoT38I	GRGCYC	2 cut(s)	710, 1745
ErhI	CCWWGG	3 cut(s)	383, 1362, 1690
FaeI	CATG	9 cut(s)	387, 1248, 1373, 1426, 1434, 1549, 1595, 1763, 1847
FalI	AAGNNNNNCTT	2 cut(s)	652, 684
FatI	CATG	9 cut(s)	383, 1244, 1369, 1422, 1430, 1545, 1591, 1759, 1843
FauI	CCCGC	2 cut(s)	1555, 2017
FauNDI	CATATG	2 cut(s)	400, 1117
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	9 cut(s)	1048, 1324, 1353, 1356, 1518, 1521, 1524, 1881, 2070
FokI	GGATG	6 cut(s)	695, 953, 1123, 1345, 1670, 1787
FriOI	GRGCYC	2 cut(s)	710, 1745
Fsp4HI	GCNGC	9 cut(s)	1048, 1324, 1353, 1356, 1518, 1521, 1524, 1881, 2070
FspBI	CTAG	5 cut(s)	44, 63, 765, 1635, 2066
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	9 cut(s)	1048, 1324, 1353, 1356, 1518, 1521, 1524, 1881, 2070
GsuI	CTGGAG	1 cut(s)	1116
HaeII	RGCGCY	1 cut(s)	420
HaeIII	GGCC	5 cut(s)	464, 1026, 1585, 1624, 1734
HapII	CCGG	2 cut(s)	227, 1051
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	9 cut(s)	387, 1248, 1373, 1426, 1434, 1549, 1595, 1763, 1847
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	4 cut(s)	96, 565, 1003, 1568
HindII	GTYRAC	4 cut(s)	96, 565, 1003, 1568
HindIII	AAGCTT	2 cut(s)	75, 618
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	2 cut(s)	227, 1051
HphI	GGTGA	1 cut(s)	929
Hpy166II	GTNNAC	6 cut(s)	60, 96, 565, 1003, 1292, 1568
Hpy188III	TCNNGA	9 cut(s)	425, 758, 809, 1010, 1065, 1140, 2040, 2143, 2150
Hpy8I	GTNNAC	6 cut(s)	60, 96, 565, 1003, 1292, 1568
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	4 cut(s)	337, 530, 1429, 1460
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 969, 1523, 1740, 1775
Hsp92II	CATG	9 cut(s)	387, 1248, 1373, 1426, 1434, 1549, 1595, 1763, 1847
HspAI	GCGC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	565
LguI	GCTCTTC	1 cut(s)	2187
LmnI	GCTCC	5 cut(s)	25, 366, 1163, 1613, 1677
Lsp1109I	GCAGC	8 cut(s)	1034, 1335, 1339, 1367, 1510, 1529, 1867, 2081
LweI	GCATC	8 cut(s)	699, 1070, 1094, 1145, 1246, 1367, 1765, 2160
MaeI	CTAG	5 cut(s)	44, 63, 765, 1635, 2066
MaeIII	GTNAC	2 cut(s)	1176, 1798
MflI	RGATCY	6 cut(s)	498, 824, 1465, 1509, 1931, 2048
MhlI	GDGCHC	4 cut(s)	710, 726, 1745, 1822
MluCI	AATT	8 cut(s)	484, 540, 834, 845, 1295, 1338, 1476, 2199
MlyI	GAGTC	6 cut(s)	373, 869, 898, 1115, 1589, 2140
MmeI	TCCRAC	2 cut(s)	606, 1290
MroXI	GAANNNNTTC	1 cut(s)	2243
MseI	TTAA	7 cut(s)	564, 572, 656, 848, 1239, 1409, 1925
MspA1I	CMGCKG	1 cut(s)	1523
MspI	CCGG	2 cut(s)	227, 1051
MspR9I	CCNGG	2 cut(s)	371, 938
MvaI	CCWGG	2 cut(s)	371, 938
MwoI	GCNNNNNNNGC	5 cut(s)	302, 969, 1523, 1740, 1775
NcoI	CCATGG	1 cut(s)	383
NdeI	CATATG	2 cut(s)	400, 1117
NlaIII	CATG	9 cut(s)	387, 1248, 1373, 1426, 1434, 1549, 1595, 1763, 1847
NlaIV	GGNNCC	5 cut(s)	368, 826, 946, 1165, 1904
NmuCI	GTSAC	1 cut(s)	1176
NspI	RCATGY	1 cut(s)	1549
PaeR7I	CTCGAG	1 cut(s)	2040
PaqCI	CACCTGC	1 cut(s)	1480
PceI	AGGCCT	1 cut(s)	464
PciI	ACATGT	1 cut(s)	1545
PciSI	GCTCTTC	1 cut(s)	2187
PcsI	WCGNNNNNNNCGW	1 cut(s)	2123
PdmI	GAANNNNTTC	1 cut(s)	2243
PfeI	GAWTC	4 cut(s)	83, 595, 872, 1540
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	9 cut(s)	1049, 1325, 1354, 1357, 1519, 1522, 1525, 1882, 2071
PleI	GAGTC	6 cut(s)	373, 868, 897, 1115, 1589, 2140
PpsI	GAGTC	6 cut(s)	373, 868, 897, 1115, 1589, 2140
PscI	ACATGT	1 cut(s)	1545
Psp124BI	GAGCTC	2 cut(s)	710, 1745
Psp6I	CCWGG	2 cut(s)	369, 936
PspGI	CCWGG	2 cut(s)	369, 936
PspN4I	GGNNCC	5 cut(s)	368, 826, 946, 1165, 1904
PspPI	GGNCC	3 cut(s)	1024, 1622, 1733
PsrI	GAACNNNNNNTAC	2 cut(s)	904, 936
PstI	CTGCAG	1 cut(s)	1357
PstNI	CAGNNNCTG	4 cut(s)	1047, 1523, 1728, 1934
PsuI	RGATCY	6 cut(s)	498, 824, 1465, 1509, 1931, 2048
RsaI	GTAC	4 cut(s)	159, 281, 511, 1099
RsaNI	GTAC	4 cut(s)	158, 280, 510, 1098
SacI	GAGCTC	2 cut(s)	710, 1745
SalI	GTCGAC	1 cut(s)	94
SapI	GCTCTTC	1 cut(s)	2187
SaqAI	TTAA	7 cut(s)	564, 572, 656, 848, 1239, 1409, 1925
SatI	GCNGC	9 cut(s)	1048, 1324, 1353, 1356, 1518, 1521, 1524, 1881, 2070
Sau96I	GGNCC	3 cut(s)	1024, 1622, 1733
SchI	GAGTC	6 cut(s)	373, 869, 898, 1115, 1589, 2140
ScrFI	CCNGG	2 cut(s)	371, 938
SduI	GDGCHC	4 cut(s)	710, 726, 1745, 1822
SfaNI	GCATC	8 cut(s)	699, 1070, 1094, 1145, 1246, 1367, 1765, 2160
SfcI	CTRYAG	4 cut(s)	1329, 1353, 1717, 1893
Sfr274I	CTCGAG	1 cut(s)	2040
SlaI	CTCGAG	1 cut(s)	2040
SmlI	CTYRAG	2 cut(s)	599, 2040
SmoI	CTYRAG	2 cut(s)	599, 2040
Sse9I	AATT	8 cut(s)	484, 540, 834, 845, 1295, 1338, 1476, 2199
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	5 cut(s)	277, 1521, 1562, 2010, 2122
SspMI	CTAG	5 cut(s)	44, 63, 765, 1635, 2066
SstI	GAGCTC	2 cut(s)	710, 1745
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	369, 936
StyI	CCWWGG	3 cut(s)	383, 1362, 1690
TaqI	TCGA	8 cut(s)	95, 254, 693, 808, 887, 1254, 2041, 2247
TaqII	GACCGA	1 cut(s)	1218
TasI	AATT	8 cut(s)	484, 540, 834, 845, 1295, 1338, 1476, 2199
TauI	GCSGC	1 cut(s)	1523
TfiI	GAWTC	4 cut(s)	83, 595, 872, 1540
Tru1I	TTAA	7 cut(s)	564, 572, 656, 848, 1239, 1409, 1925
Tru9I	TTAA	7 cut(s)	564, 572, 656, 848, 1239, 1409, 1925
TscAI	CASTG	5 cut(s)	215, 1087, 1107, 1228, 1882
TseFI	GTSAC	1 cut(s)	1176
TseI	GCWGC	8 cut(s)	1047, 1323, 1352, 1355, 1517, 1523, 1880, 2069
Tsp45I	GTSAC	1 cut(s)	1176
TspDTI	ATGAA	9 cut(s)	210, 356, 660, 699, 732, 873, 969, 1395, 1776
TspGWI	ACGGA	2 cut(s)	113, 980
TspRI	CASTG	5 cut(s)	215, 1087, 1107, 1228, 1882
XapI	RAATTY	2 cut(s)	484, 834
XceI	RCATGY	1 cut(s)	1549
XhoI	CTCGAG	1 cut(s)	2040
XmiI	GTMKAC	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	2243
XspI	CTAG	5 cut(s)	44, 63, 765, 1635, 2066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.