Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011053

Physical Location & Seq

Genomic Coordinates Reverse (-)

36494713 .. 36497038

Gene Structure 2326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1310000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGCGCATGCAGGAAGACAATCCAAAATTCTTCTATGCAGTTGATCTGAATGAAGAGCATGGATTGAGAAATGCGTTCTGGGTTGATGCCAAAGGAATGGAAGATTACACTAACTTCAACGATGTTGTTTTCTTCGACACCACATACTTCACACACAAGTATAAAATACCGCTGGTTCTTTTTATAGGAGTGAACCATCATATTCAGCCCACATTACTTGGCTGTGCTTTGATTGCAGATGAGACGGTTTATACTTTTATGTGGCTAATGCAAACATGGTTTATAGCAATGGGGGAACAAGCTCCGCGAGTAATACTCACCGACCAGAACGACGCCATCAAAGCAGCTATTCCAACAGTATTTCCAGGCACACGCCATTGCTTTTCTTTATGGAACATAATGGAGAAGATGCACAGGCAGCTCGAGTTTCTAAGGATGTGGCATGATAGTTTTATGGAAAAATTTAGTAAGTGTATCTTCAAGTCCTGGTCAGAACAACAATTTGAAAAGAGATGGTGGAAACTTATTGATAGATTTAATCTTAGGGACATTGAATGGATGCAGTCATTGTTTGAAGTGCGAGAGTTTATGGAAAGATACAGAGCAATTCTTGAAGATAGGTATGAAGAGGAAGCGAAAGCAAATTTTGATGCTTGGCATGAAATGCCTGAGTTAAGGTCTCCGTCGCCGTTTGAGAAACAAATGTCACTAGTGTACACGCATGAGGTTTTCAAATACTTTCAAGTTGAGGTCTTGGGAGCAGCTGCTTGTCATCTTAAGAAAGAAAATGAAGGCGAGACATCAACTACGTACAGTGTTAAAGACTTTGAAGACAATCGAAATTATACTGTAGAGTGGAATGAATCAAAATCAGATGTATATTGTTCTTGCCACTTGTTCGAGTATAAAGGTTATCTCTGTAGACATGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTCATCATCCCTCCCAAATATATATTGCAGCGATGGACAAATGCTGCTATGAGCAGGCATGACATTTGTGAAAGAGTGGATGAGGTTCAGTCTAAAGTCCGTCGCTACAATGATTTATGTCGAAGAGCCATAATAGTGGGTGAAGAAGGGTCACTCTCGCAAGAAAGTTATGATGTAGCATTATCTGCCATAAAAGAAGCGTGGAAGCAATGTGCAAGTTTAAACAACTCTCTTGAGAACAATGCAAAACCTCATGATTCAGCAATGCATGGTGTTTGCGGTGTTGATGAAGAGAATCAATGCAGCACTACATCTAGTGCCAACAAGACTCCTAGGAGAGCCGGGTCCGGGAAGGAGGTGGCTGCTAGGAATGGGAATAACACAAGCAAGAAAGGAAAGGTGAGTAGTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

458

Amino Acids

53.57

Weight (kDa)

5.97

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	42 - 136	1.4e-25	MULE transposase domain
SWIM	PF04434	282 - 316	2.5e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76320 AT1G76320 AT1G76320 AT1G76320
fragaria_vesca	FvH4_7g34132
malus_domestica	MD01G1237500.v1.1 MD07G1310000.v1.1
prunus_persica	Prupe.2G327900_v2.0.a1
pyrus_communis	pycom01g24520
rosa_chinensis	RchiOBHm_Chr1g0384461
rosa_multiflora	Rmu_co8407315.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276680
rosa_rugosa	Rorug01G0447900 Rorug01G0448000 Rorug05G0131300
rosa_samantha	Rh1AG473200 Rh1BG431200 Rh1CG444400
rosa_wichuraiana	Rw1G039940 Rw4G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccI	GTMKAC	1 cut(s)	922
AccII	CGCG	1 cut(s)	307
AciI	CCGC	3 cut(s)	170, 305, 1236
AcsI	RAATTY	3 cut(s)	26, 461, 643
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	2 cut(s)	716, 812
AfiI	CCNNNNNNNGG	1 cut(s)	1305
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	9 cut(s)	118, 481, 506, 554, 575, 614, 733, 743, 830
AhlI	ACTAGT	1 cut(s)	709
AjnI	CCWGG	2 cut(s)	364, 485
AluBI	AGCT	4 cut(s)	302, 347, 421, 764
AluI	AGCT	4 cut(s)	302, 347, 421, 764
Alw26I	GTCTC	3 cut(s)	236, 684, 791
Ama87I	CYCGRG	1 cut(s)	422
ApeKI	GCWGC	8 cut(s)	344, 418, 761, 764, 985, 1001, 1260, 1319
ApoI	RAATTY	3 cut(s)	26, 461, 643
AspA2I	CCTAGG	1 cut(s)	1289
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	1302
AsuC2I	CCSGG	2 cut(s)	1300, 1306
AsuHPI	GGTGA	3 cut(s)	310, 1109, 1369
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	1302
AvrII	CCTAGG	1 cut(s)	1289
BbsI	GAAGAC	2 cut(s)	21, 837
BbvI	GCAGC	8 cut(s)	356, 430, 751, 773, 988, 997, 1272, 1306
BccI	CCATC	4 cut(s)	204, 344, 507, 984
BceAI	ACGGC	1 cut(s)	673
BciT130I	CCWGG	2 cut(s)	366, 487
BcnI	CCSGG	2 cut(s)	1300, 1306
BcoDI	GTCTC	3 cut(s)	236, 684, 791
BcuI	ACTAGT	1 cut(s)	709
BfaI	CTAG	4 cut(s)	710, 1272, 1290, 1323
BfmI	CTRYAG	2 cut(s)	849, 919
BfrI	CTTAAG	1 cut(s)	776
BisI	GCNGC	8 cut(s)	345, 419, 762, 765, 986, 1002, 1261, 1320
BlnI	CCTAGG	1 cut(s)	1289
BlsI	GCNGC	8 cut(s)	346, 420, 763, 766, 987, 1003, 1262, 1321
Bme1390I	CCNGG	4 cut(s)	366, 487, 1300, 1306
Bme18I	GGWCC	1 cut(s)	1302
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	1302
BmiI	GGNNCC	1 cut(s)	1303
BmrFI	CCNGG	4 cut(s)	366, 487, 1300, 1306
BmsI	GCATC	4 cut(s)	76, 399, 549, 640
BpiI	GAAGAC	2 cut(s)	21, 837
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpuEI	CTTGAG	1 cut(s)	1211
BpuMI	CCSGG	2 cut(s)	1300, 1306
BsaAI	YACGTR	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	1289
Bsc4I	CCNNNNNNNGG	1 cut(s)	1305
Bse3DI	GCAATG	4 cut(s)	294, 376, 1172, 1227
BseBI	CCWGG	2 cut(s)	366, 487
BseDI	CCNNGG	1 cut(s)	1289
BseGI	GGATG	4 cut(s)	441, 564, 963, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	1305
BseMI	GCAATG	4 cut(s)	294, 376, 1172, 1227
BseMII	CTCAG	1 cut(s)	660
BseXI	GCAGC	8 cut(s)	356, 430, 751, 773, 988, 997, 1272, 1306
Bsh1236I	CGCG	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	1299, 1305
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	1305
BsmAI	GTCTC	3 cut(s)	236, 684, 791
BsmBI	CGTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	560
Bso31I	GGTCTC	1 cut(s)	684
BsoBI	CYCGRG	1 cut(s)	422
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	3 cut(s)	170, 305, 1236
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	1210
BspLI	GGNNCC	1 cut(s)	1303
BspQI	GCTCTTC	2 cut(s)	48, 1075
BspTI	CTTAAG	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	684
BsrDI	GCAATG	4 cut(s)	294, 376, 1172, 1227
BsrGI	TGTACA	1 cut(s)	714
BssECI	CCNNGG	1 cut(s)	1289
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	1289
Bst2UI	CCWGG	2 cut(s)	366, 487
Bst4CI	ACNGT	4 cut(s)	247, 358, 815, 850
Bst6I	CTCTTC	4 cut(s)	48, 621, 1075, 1242
BstACI	GRCGYC	1 cut(s)	333
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	2 cut(s)	664, 1142
BstAUI	TGTACA	1 cut(s)	714
BstBAI	YACGTR	1 cut(s)	810
BstC8I	GCNNGC	2 cut(s)	8, 1013
BstDEI	CTNAG	3 cut(s)	431, 542, 669
BstF5I	GGATG	4 cut(s)	441, 564, 963, 1042
BstFNI	CGCG	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	3 cut(s)	236, 684, 791
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 341, 418, 664, 1142
BstNI	CCWGG	2 cut(s)	366, 487
BstNSI	RCATGY	2 cut(s)	10, 929
BstSCI	CCNGG	4 cut(s)	364, 485, 1298, 1304
BstSFI	CTRYAG	2 cut(s)	849, 919
BstSNI	TACGTA	1 cut(s)	810
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	8 cut(s)	356, 430, 751, 773, 988, 997, 1272, 1306
BstV2I	GAAGAC	2 cut(s)	21, 837
BstXI	CCANNNNNNTGG	3 cut(s)	97, 950, 1093
BtgZI	GCGATG	1 cut(s)	1003
BtsCI	GGATG	4 cut(s)	441, 564, 963, 1042
BtsIMutI	CAGTG	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	8, 1013
CciI	TCATGA	1 cut(s)	1210
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	1302
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	715, 811
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviQI	GTAC	2 cut(s)	715, 811
DdeI	CTNAG	3 cut(s)	431, 542, 669
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
DraI	TTTAAA	1 cut(s)	1179
Eam1104I	CTCTTC	4 cut(s)	48, 621, 1075, 1242
EarI	CTCTTC	4 cut(s)	48, 621, 1075, 1242
Eco105I	TACGTA	1 cut(s)	810
Eco130I	CCWWGG	1 cut(s)	1289
Eco31I	GGTCTC	1 cut(s)	684
Eco47I	GGWCC	1 cut(s)	1302
Eco88I	CYCGRG	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	364, 485
EcoT14I	CCWWGG	1 cut(s)	1289
EcoT22I	ATGCAT	1 cut(s)	1227
ErhI	CCWWGG	1 cut(s)	1289
Esp3I	CGTCTC	1 cut(s)	236
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	922
Fnu4HI	GCNGC	8 cut(s)	345, 419, 762, 765, 986, 1002, 1261, 1320
FokI	GGATG	4 cut(s)	448, 571, 950, 1049
Fsp4HI	GCNGC	8 cut(s)	345, 419, 762, 765, 986, 1002, 1261, 1320
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	4 cut(s)	710, 1272, 1290, 1323
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	8 cut(s)	345, 419, 762, 765, 986, 1002, 1261, 1320
HapII	CCGG	2 cut(s)	1299, 1305
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	4 cut(s)	863, 1214, 1252, 1285
HpaII	CCGG	2 cut(s)	1299, 1305
HphI	GGTGA	3 cut(s)	310, 1109, 1369
Hpy166II	GTNNAC	4 cut(s)	193, 715, 717, 923
Hpy188I	TCNGA	3 cut(s)	48, 493, 874
Hpy188III	TCNNGA	3 cut(s)	611, 1190, 1211
Hpy8I	GTNNAC	4 cut(s)	193, 715, 717, 923
Hpy99I	CGWCG	3 cut(s)	335, 688, 1062
HpyAV	CCTTC	3 cut(s)	785, 1097, 1303
HpyCH4III	ACNGT	4 cut(s)	247, 358, 815, 850
HpyCH4IV	ACGT	1 cut(s)	809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 341, 418, 664, 1142
HpyF3I	CTNAG	3 cut(s)	431, 542, 669
HpySE526I	ACGT	1 cut(s)	809
Hsp92I	GRCGYC	1 cut(s)	333
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	43
LguI	GCTCTTC	2 cut(s)	48, 1075
LmnI	GCTCC	2 cut(s)	307, 758
Lsp1109I	GCAGC	8 cut(s)	356, 430, 751, 773, 988, 997, 1272, 1306
LweI	GCATC	4 cut(s)	76, 399, 549, 640
MaeI	CTAG	4 cut(s)	710, 1272, 1290, 1323
MaeII	ACGT	1 cut(s)	809
MaeIII	GTNAC	2 cut(s)	705, 1107
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MluCI	AATT	6 cut(s)	26, 461, 500, 606, 643, 841
MlyI	GAGTC	1 cut(s)	1279
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	622, 718, 742, 978, 1033, 1218, 1306
Mph1103I	ATGCAT	1 cut(s)	1227
MseI	TTAA	5 cut(s)	537, 674, 777, 819, 1178
MslI	CAYNNNNRTG	1 cut(s)	1091
MspA1I	CMGCKG	2 cut(s)	172, 764
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	2 cut(s)	1299, 1305
MspR9I	CCNGG	4 cut(s)	366, 487, 1300, 1306
MssI	GTTTAAAC	1 cut(s)	1179
MvaI	CCWGG	2 cut(s)	366, 487
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	5 cut(s)	233, 341, 418, 664, 1142
NciI	CCSGG	2 cut(s)	1300, 1306
NdeII	GATC	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	1303
NmuCI	GTSAC	2 cut(s)	705, 1107
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	1227
NspI	RCATGY	2 cut(s)	10, 929
PaeI	GCATGC	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	1210
PciSI	GCTCTTC	2 cut(s)	48, 1075
PfeI	GAWTC	3 cut(s)	863, 1214, 1252
PfoI	TCCNGGA	1 cut(s)	1304
PkrI	GCNGC	8 cut(s)	346, 420, 763, 766, 987, 1003, 1262, 1321
PleI	GAGTC	1 cut(s)	1279
PmeI	GTTTAAAC	1 cut(s)	1179
PpsI	GAGTC	1 cut(s)	1279
Ppu21I	YACGTR	1 cut(s)	810
Psp6I	CCWGG	2 cut(s)	364, 485
PspGI	CCWGG	2 cut(s)	364, 485
PspN4I	GGNNCC	1 cut(s)	1303
PspPI	GGNCC	1 cut(s)	1302
PspXI	VCTCGAGB	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	716, 812
RsaNI	GTAC	2 cut(s)	715, 811
RseI	CAYNNNNRTG	1 cut(s)	1091
SapI	GCTCTTC	2 cut(s)	48, 1075
SaqAI	TTAA	5 cut(s)	537, 674, 777, 819, 1178
SatI	GCNGC	8 cut(s)	345, 419, 762, 765, 986, 1002, 1261, 1320
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	1302
SchI	GAGTC	1 cut(s)	1279
ScrFI	CCNGG	4 cut(s)	366, 487, 1300, 1306
SfaNI	GCATC	4 cut(s)	76, 399, 549, 640
SfcI	CTRYAG	2 cut(s)	849, 919
Sfr274I	CTCGAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	1302
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	1091
SmlI	CTYRAG	3 cut(s)	422, 776, 1190
SmoI	CTYRAG	3 cut(s)	422, 776, 1190
SnaBI	TACGTA	1 cut(s)	810
SpeI	ACTAGT	1 cut(s)	709
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	6 cut(s)	26, 461, 500, 606, 643, 841
SsiI	CCGC	3 cut(s)	170, 305, 1236
SspMI	CTAG	4 cut(s)	710, 1272, 1290, 1323
StyD4I	CCNGG	4 cut(s)	364, 485, 1298, 1304
StyI	CCWWGG	1 cut(s)	1289
TaaI	ACNGT	4 cut(s)	247, 358, 815, 850
TaiI	ACGT	1 cut(s)	812
TaqI	TCGA	5 cut(s)	135, 423, 838, 900, 1078
TasI	AATT	6 cut(s)	26, 461, 500, 606, 643, 841
TatI	WGTACW	1 cut(s)	714
TfiI	GAWTC	3 cut(s)	863, 1214, 1252
Tru1I	TTAA	5 cut(s)	537, 674, 777, 819, 1178
Tru9I	TTAA	5 cut(s)	537, 674, 777, 819, 1178
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	705, 1107
TseI	GCWGC	8 cut(s)	344, 418, 761, 764, 985, 1001, 1260, 1319
Tsp45I	GTSAC	2 cut(s)	705, 1107
TspDTI	ATGAA	7 cut(s)	66, 639, 675, 804, 876, 949, 1260
TspGWI	ACGGA	2 cut(s)	672, 1046
TspRI	CASTG	1 cut(s)	820
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	1302
XapI	RAATTY	3 cut(s)	26, 461, 643
XceI	RCATGY	2 cut(s)	10, 929
XhoI	CTCGAG	1 cut(s)	422
XmaJI	CCTAGG	1 cut(s)	1289
XmiI	GTMKAC	1 cut(s)	922
XspI	CTAG	4 cut(s)	710, 1272, 1290, 1323
Zsp2I	ATGCAT	1 cut(s)	1227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.