Rmu_co8407315.1_g000001

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8407315.1
Physical Location & Seq
Forward (+)
22 .. 1315
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8407315.1_g000001.1.cds

Sequence Viewer

Length: 1294 bp
atgcgaagacggaagaatgtgaattcagtgtccagcttattcagtgcatatcaaaatgttgattgtttagagagttatttgagaaatcagcatgataaggggcggtccttgtctctagagtcaggggatgctcaagtgctactggaatgctttatgcgcatgcaggaagaaaatccaaaattctactatgcagttgatctaaatgaagagcaccggttgagaaatgtgttctgggtagactccaaaggaatggaagactacaccaacttcagtgatgttgttttctttgacaccacatacttcacaaacaagtataaaatgcccttggttctttttataggagtgaaccatcatattcaacccacgttaatgggttgtgcattgattgcagatgagacggtttatacttttgtgtggttaatgcagacatggttaatagcaatgggggaacaagctccacgagtgatactctctgaccagaacgacgccatcaaagcggctattgcagctgtatttccaggcacacgccattgcttttctttgtggcatataatggagaaaatacacgggcagctcgagttttggagcatgtggaatgatacttttatggccgagtttaatgagtgtgtttttaagtcctggtcagaagaacaatttgacaagagatggtgcaaactgcttgataagtttaatctgagagaagttgaatggattcagtccttgtatgaagatcgtactcattgggtgcccactttcatgagagatatatcctttgctggattgtctccaacttcacggtcgacaagtttgaattcatcatttgacaaatatttccaagcggaaacttcagtaccagagtttatggaaagttacagggtaattcttgaagataggtatgaagaggaagcaaaagcaaattttgatgcttggcatgaaacacccgagttgaagtctccatcaccttttgagaagcaactggcactggtgtacacacgggaagtttttaaaaacttccaactggaggttttgggagcagctgcttgtcatcttaagaaagaaagtgaagacatgacaactacaacatacagtgtaaaagatattgaagatgaacagaattatacagtggagtggaacgaatcgaagtcggatatatgttgttcgtgccattcatttgagtataagggttatctctgcagacacgctattgttgttctccaaatgtctggtgttttcaccatacctgccaaatatgtattgcagcggtggacaaatactgctatgagcaggcatgcca

Protein Analysis

431

Amino Acids

50.71

Weight (kDa)

5.28

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011053)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 1249
AccB1I GGYRCC 1 cut(s) 745
AccI GTMKAC 2 cut(s) 237, 800
AciI CCGC 4 cut(s) 103, 497, 839, 1261
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 4 cut(s) 22, 179, 811, 916
AcuI CTGAAG 2 cut(s) 253, 831
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 3 cut(s) 736, 852, 989
AfiI CCNNNNNNNGG 1 cut(s) 1021
AflII CTTAAG 1 cut(s) 1049
AgeI ACCGGT 1 cut(s) 213
AgsI TTSAA 6 cut(s) 359, 707, 811, 887, 949, 1103
AjnI CCWGG 2 cut(s) 517, 638
AluBI AGCT 5 cut(s) 36, 455, 509, 574, 1037
AluI AGCT 5 cut(s) 36, 455, 509, 574, 1037
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 4 cut(s) 117, 389, 789, 957
Ama87I CYCGRG 2 cut(s) 575, 941
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 5 cut(s) 506, 571, 1034, 1037, 1258
ApoI RAATTY 4 cut(s) 22, 179, 811, 916
AsiGI ACCGGT 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 951, 1225
AvaI CYCGRG 2 cut(s) 575, 941
AvaII GGWCC 1 cut(s) 105
BaeGI GKGCMC 1 cut(s) 750
BaeI ACNNNNGTAYC 2 cut(s) 834, 867
BanI GGYRCC 1 cut(s) 745
BauI CACGAG 1 cut(s) 459
BbsI GAAGAC 3 cut(s) 13, 261, 1071
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 5 cut(s) 518, 583, 1024, 1046, 1270
BccI CCATC 4 cut(s) 357, 497, 660, 964
BciT130I CCWGG 2 cut(s) 519, 640
BcoDI GTCTC 4 cut(s) 117, 389, 789, 957
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 1192
BfrI CTTAAG 1 cut(s) 1049
BfuAI ACCTGC 1 cut(s) 1249
BisI GCNGC 6 cut(s) 498, 507, 572, 1035, 1038, 1259
BlsI GCNGC 6 cut(s) 499, 508, 573, 1036, 1039, 1260
Bme1390I CCNGG 2 cut(s) 519, 640
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 2 cut(s) 575, 941
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 2 cut(s) 519, 640
BmsI GCATC 2 cut(s) 118, 913
BpiI GAAGAC 3 cut(s) 13, 261, 1071
BplI GAGNNNNNCTC 2 cut(s) 453, 485
BpmI CTGGAG 1 cut(s) 1040
BpuEI CTTGAG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 1021
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 4 cut(s) 147, 981, 987, 1023
Bse3DI GCAATG 2 cut(s) 447, 529
BseBI CCWGG 2 cut(s) 519, 640
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 1021
BseMI GCAATG 2 cut(s) 447, 529
BseMII CTCAG 1 cut(s) 686
BseNI ACTGG 4 cut(s) 147, 981, 987, 1023
BseSI GKGCMC 1 cut(s) 750
BseXI GCAGC 5 cut(s) 518, 583, 1024, 1046, 1270
Bsh1285I CGRYCG 1 cut(s) 800
BshFI GGCC 1 cut(s) 611
BshNI GGYRCC 1 cut(s) 745
BshTI ACCGGT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 2 cut(s) 575, 941
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 1021
BsmAI GTCTC 4 cut(s) 117, 389, 789, 957
BsmBI CGTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 1 cut(s) 611
BsoBI CYCGRG 2 cut(s) 575, 941
Bsp1286I GDGCHC 2 cut(s) 213, 750
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 2 cut(s) 196, 730
BspACI CCGC 4 cut(s) 103, 497, 839, 1261
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 687
BspHI TCATGA 1 cut(s) 756
BspLI GGNNCC 1 cut(s) 747
BspMAI CTGCAG 1 cut(s) 1196
BspMI ACCTGC 1 cut(s) 1249
BspQI GCTCTTC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 745
BspTI CTTAAG 1 cut(s) 1049
BsrDI GCAATG 2 cut(s) 447, 529
BsrFI RCCGGY 1 cut(s) 213
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 4 cut(s) 147, 981, 987, 1023
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 196, 730
BssNI GRCGYC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 2 cut(s) 519, 640
Bst4CI ACNGT 4 cut(s) 400, 798, 1088, 1123
Bst6I CTCTTC 2 cut(s) 201, 894
BstACI GRCGYC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 1049
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 987
BstC8I GCNNGC 3 cut(s) 161, 1286, 1290
BstDEI CTNAG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 2 cut(s) 199, 733
BstMAI GTCTC 4 cut(s) 117, 389, 789, 957
BstMBI GATC 2 cut(s) 196, 730
BstMCI CGRYCG 1 cut(s) 800
BstMWI GCNNNNNNNGC 5 cut(s) 156, 386, 494, 503, 506
BstNI CCWGG 2 cut(s) 519, 640
BstNSI RCATGY 3 cut(s) 163, 592, 1292
BstSCI CCNGG 2 cut(s) 517, 638
BstSFI CTRYAG 1 cut(s) 1192
BstSLI GKGCMC 1 cut(s) 750
BstV1I GCAGC 5 cut(s) 518, 583, 1024, 1046, 1270
BstV2I GAAGAC 3 cut(s) 13, 261, 1071
BstXI CCANNNNNNTGG 3 cut(s) 250, 370, 1223
BsuRI GGCC 1 cut(s) 611
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 6 cut(s) 33, 49, 277, 980, 1093, 1128
BveI ACCTGC 1 cut(s) 1249
Cac8I GCNNGC 3 cut(s) 161, 1286, 1290
CciI TCATGA 1 cut(s) 756
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 105
CseI GACGC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 735, 851, 988
CspAI ACCGGT 1 cut(s) 213
CviAII CATG 8 cut(s) 92, 160, 429, 589, 757, 932, 1069, 1289
CviJI RGCY 7 cut(s) 36, 455, 500, 509, 574, 611, 1037
CviKI_1 RGCY 7 cut(s) 36, 455, 500, 509, 574, 611, 1037
CviQI GTAC 3 cut(s) 735, 851, 988
DdeI CTNAG 1 cut(s) 695
DpnI GATC 2 cut(s) 198, 732
DpnII GATC 2 cut(s) 196, 730
DraI TTTAAA 1 cut(s) 1006
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 2 cut(s) 201, 894
EarI CTCTTC 2 cut(s) 201, 894
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 253, 831
Eco88I CYCGRG 2 cut(s) 575, 941
EcoRI GAATTC 2 cut(s) 22, 811
EcoRII CCWGG 2 cut(s) 517, 638
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 8 cut(s) 95, 163, 432, 592, 760, 935, 1072, 1292
FatI CATG 8 cut(s) 91, 159, 428, 588, 756, 931, 1068, 1288
FblI GTMKAC 2 cut(s) 237, 800
Fnu4HI GCNGC 6 cut(s) 498, 507, 572, 1035, 1038, 1259
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 6 cut(s) 498, 507, 572, 1035, 1038, 1259
FspAI RTGCGCAY 1 cut(s) 158
FspBI CTAG 1 cut(s) 116
FspI TGCGCA 1 cut(s) 158
GlaI GCGC 1 cut(s) 158
GluI GCNGC 6 cut(s) 498, 507, 572, 1035, 1038, 1259
GsuI CTGGAG 1 cut(s) 1040
HaeIII GGCC 1 cut(s) 611
HapII CCGG 1 cut(s) 214
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 8 cut(s) 95, 163, 432, 592, 760, 935, 1072, 1292
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 801
HindII GTYRAC 1 cut(s) 801
HinfI GANTC 4 cut(s) 119, 239, 712, 1136
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 951, 1225
Hpy166II GTNNAC 6 cut(s) 238, 346, 801, 988, 990, 1266
Hpy188I TCNGA 4 cut(s) 475, 646, 696, 1147
Hpy188III TCNNGA 3 cut(s) 116, 757, 884
Hpy8I GTNNAC 6 cut(s) 238, 346, 801, 988, 990, 1266
Hpy99I CGWCG 1 cut(s) 488
HpyCH4III ACNGT 4 cut(s) 400, 798, 1088, 1123
HpyCH4IV ACGT 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 386, 494, 503, 506
HpyF3I CTNAG 1 cut(s) 695
HpySE526I ACGT 1 cut(s) 365
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 8 cut(s) 95, 163, 432, 592, 760, 935, 1072, 1292
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 196, 730
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 3 cut(s) 460, 585, 1031
Lsp1109I GCAGC 5 cut(s) 518, 583, 1024, 1046, 1270
LweI GCATC 2 cut(s) 118, 913
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 869
MalI GATC 2 cut(s) 198, 732
MboI GATC 2 cut(s) 196, 730
MhlI GDGCHC 2 cut(s) 213, 750
MluCI AATT 7 cut(s) 22, 179, 653, 811, 879, 916, 1114
MlyI GAGTC 2 cut(s) 128, 233
MmeI TCCRAC 3 cut(s) 812, 1039, 1125
MnlI CCTC 2 cut(s) 895, 1015
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 8 cut(s) 368, 419, 434, 618, 633, 690, 1005, 1050
MslI CAYNNNNRTG 2 cut(s) 368, 755
MspA1I CMGCKG 3 cut(s) 509, 1037, 1261
MspCI CTTAAG 1 cut(s) 1049
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 519, 640
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 2 cut(s) 519, 640
MwoI GCNNNNNNNGC 5 cut(s) 156, 386, 494, 503, 506
NdeII GATC 2 cut(s) 196, 730
NlaIII CATG 8 cut(s) 95, 163, 432, 592, 760, 935, 1072, 1292
NlaIV GGNNCC 1 cut(s) 747
NmeAIII GCCGAG 1 cut(s) 637
NsbI TGCGCA 1 cut(s) 158
NspI RCATGY 3 cut(s) 163, 592, 1292
PaeI GCATGC 2 cut(s) 163, 1292
PaeR7I CTCGAG 1 cut(s) 575
PagI TCATGA 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PctI GAATGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 2 cut(s) 712, 1136
PinAI ACCGGT 1 cut(s) 213
PkrI GCNGC 6 cut(s) 499, 508, 573, 1036, 1039, 1260
PleI GAGTC 2 cut(s) 127, 233
PpsI GAGTC 2 cut(s) 127, 233
Psp6I CCWGG 2 cut(s) 517, 638
PspGI CCWGG 2 cut(s) 517, 638
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 1 cut(s) 105
PspXI VCTCGAGB 1 cut(s) 575
PstI CTGCAG 1 cut(s) 1196
PvuII CAGCTG 2 cut(s) 509, 1037
RsaI GTAC 3 cut(s) 736, 852, 989
RsaNI GTAC 3 cut(s) 735, 851, 988
RseI CAYNNNNRTG 2 cut(s) 368, 755
SalI GTCGAC 1 cut(s) 799
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 8 cut(s) 368, 419, 434, 618, 633, 690, 1005, 1050
SatI GCNGC 6 cut(s) 498, 507, 572, 1035, 1038, 1259
Sau3AI GATC 2 cut(s) 196, 730
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 2 cut(s) 128, 233
ScrFI CCNGG 2 cut(s) 519, 640
SduI GDGCHC 2 cut(s) 213, 750
SfaNI GCATC 2 cut(s) 118, 913
SfcI CTRYAG 1 cut(s) 1192
Sfr274I CTCGAG 1 cut(s) 575
SinI GGWCC 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 2 cut(s) 368, 755
SmlI CTYRAG 3 cut(s) 132, 575, 1049
SmoI CTYRAG 3 cut(s) 132, 575, 1049
SphI GCATGC 2 cut(s) 163, 1292
Sse9I AATT 7 cut(s) 22, 179, 653, 811, 879, 916, 1114
SsiI CCGC 4 cut(s) 103, 497, 839, 1261
SspI AATATT 1 cut(s) 830
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 517, 638
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 4 cut(s) 400, 798, 1088, 1123
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 576, 800, 1139
TasI AATT 7 cut(s) 22, 179, 653, 811, 879, 916, 1114
TatI WGTACW 1 cut(s) 987
TauI GCSGC 1 cut(s) 500
TfiI GAWTC 2 cut(s) 712, 1136
Tru1I TTAA 8 cut(s) 368, 419, 434, 618, 633, 690, 1005, 1050
Tru9I TTAA 8 cut(s) 368, 419, 434, 618, 633, 690, 1005, 1050
TscAI CASTG 6 cut(s) 33, 49, 277, 987, 1093, 1128
TseI GCWGC 5 cut(s) 506, 571, 1034, 1037, 1258
TspDTI ATGAA 8 cut(s) 219, 741, 745, 804, 912, 948, 1122, 1158
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 6 cut(s) 33, 49, 277, 987, 1093, 1128
Vha464I CTTAAG 1 cut(s) 1049
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 4 cut(s) 22, 179, 811, 916
XbaI TCTAGA 1 cut(s) 115
XceI RCATGY 3 cut(s) 163, 592, 1292
XhoI CTCGAG 1 cut(s) 575
XmiI GTMKAC 2 cut(s) 237, 800
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.