Rorug05G0131300

Far-red impaired response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011053
Physical Location & Seq
Reverse (-)
11710651 .. 11712255
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0131300.1

Sequence Viewer

Length: 1605 bp
ATGAAGTTGCCGAGTTCTTTAGCAGTCGTTCTCTTCATTCTCTCAACCCTTTGGCTCTCAACTACTTCAAATTCCATTCTCGAAAACTTCCTCAAATGCCTTCCAGAACAAACTCACTCCAACTACTCCATCTCTGAAGCCATTTACACCAGCCAAAATGCCACTTTTGAATCCGTTCTGCTGTCATACATCAGAAACGGCAGATATTTAACCCCTACAACTCCGAAACCATTGGCTATTGTAACAGCCAAGCATGAATCCCACGTGCAAGCAACTGTGATCTGTGCAAAGCGGCACGGCTTGCAGATTAGAATCCGAAGTGGAGGCCACGATTACGAGGGTCTATCTTACGTGTCACATGTCCCCTTTGTTATTCTTGACATGTTTCATCTCCACGCCATTCATGTTGATGTGGCGGATGAGAGTGCTTGGGTTGAGTCTGGGGCTATTGTTGGTGAACTTTACTATGAAATCGCAAAGAACAGTAAAGTTCATGGGTTTTCAGCTGCAGCTGGTCCAACTGTCGGTGTTGGTGGTCACTTTAGTGGCGGTGGGTATGGTGTCATGATGAGAAAATATGGGCTCACCGTGGATAACATTGAAGATGCTAAACTAGTTAATGTGAATGGTACAGTTCTTGATAGAAAGTCTATGGGAGAAGATCTTTTTTGGGCCATTAGAGGTGGTGGTGGAGCAAGCTTTGGAGTCATTTTGTCATGGAAAATAAAGCTGCTTCCAGTGCCAGCCAAAGTGACTGTATTCAACATCGGAAGGACCCTTGAGCAAGGCGCTACAGATGTTCTTTACCGGTGGCAACACGTCGCACCTAAGCTACCTAAAGAAATCTTCATCAGAGCAATGCCTCAAGTGTTGAATACTAGTTTGGGTAACAAGACTGTGGAAGTGTCATTCATTGGTTTCTTCTTGGGACAAAGTGATGAGCTTCTTTCATTGATAAATAGGAGTCTTCCTGAATTGGGTTTGCAGAAAACAGATTGCTATGAAATGAGTTGGGTAGAATCTACGGTATTTTGGGCTAATTACGCAGTTGGAACTTCCATAGACGTTCTACTTGAAAGGCCCAAGGGGCCAACAGACAACTTCAAAGGCAAGTCTGACTACGTGAAAGAACCAATTCCAAAACAAGACATAGAATTCATATTGAAGGAGCTACTTAAGATAGAAAACTTGTGGATGCAATGGAACCCTTACGGTGGAAGAATGAGTGAGATTTCTGAGTCGGAAACTCCCTTCCCTTACAGAGCCGGAAACCTGTTCATGATTCAATACTTTATGTCGTGGGAGGAAGAAGGGATTGAGGCCACCAACAAGTACCTTAGCTTATCTAGAAAATTTTACAAAATAATGACTCCATTTGTATCCAAGAGACCAAGAGAGGCCTTCCAAAACTACAGGGATCTTGACATTGGGGCCAATTTGGATAATCAGACCATCTTTAATATTGCTAGAGTCTATGGAAGCAAATACTTTGAAGGTAATTTTGAAAGGCTGGTACATGTGAAGACCAAGGTTGATCCCCAAAACTTTTTCAAGCATGAACAAAGTATTCCACCTCTTGCCCAGGGTGTAAATGGAAGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

534

Amino Acids

60.01

Weight (kDa)

7.25

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 77 - 213 3.5e-26 FAD binding domain
BBE PF08031 467 - 524 3.8e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76320 AT1G76320 AT1G76320 AT1G76320
fragaria_vesca FvH4_7g34132
malus_domestica MD01G1237500.v1.1 MD07G1310000.v1.1
prunus_persica Prupe.2G327900_v2.0.a1
pyrus_communis pycom01g24520
rosa_chinensis RchiOBHm_Chr1g0384461
rosa_multiflora Rmu_co8407315.1_g000001
rosa_roxburghii Rroxscaffold_4G00276680
rosa_rugosa Rorug01G0447900 Rorug01G0448000 Rorug05G0131300
rosa_samantha Rh1AG473200 Rh1BG431200 Rh1CG444400
rosa_wichuraiana Rw1G039940 Rw4G020470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 292, 416, 549
AclWI GGATC 2 cut(s) 1425, 1529
AcsI RAATTY 3 cut(s) 70, 1154, 1352
AcuI CTGAAG 1 cut(s) 156
AcvI CACGTG 1 cut(s) 265
AfaI GTAC 3 cut(s) 631, 1334, 1515
AfiI CCNNNNNNNGG 3 cut(s) 524, 977, 1214
AflII CTTAAG 1 cut(s) 1175
AflIII ACRYGT 5 cut(s) 351, 358, 381, 817, 1516
AgeI ACCGGT 1 cut(s) 807
AhlI ACTAGT 2 cut(s) 613, 878
AjiI CACGTC 1 cut(s) 820
AjnI CCWGG 1 cut(s) 1581
AjuI GAANNNNNNNTTGG 2 cut(s) 866, 898
AleI CACNNNNGTG 1 cut(s) 543
AluBI AGCT 8 cut(s) 506, 512, 699, 730, 832, 943, 1171, 1341
AluI AGCT 8 cut(s) 506, 512, 699, 730, 832, 943, 1171, 1341
Alw26I GTCTC 1 cut(s) 1381
AlwI GGATC 2 cut(s) 1425, 1529
AoxI GGCC 8 cut(s) 325, 672, 1079, 1088, 1320, 1398, 1431, 1598
ApeKI GCWGC 3 cut(s) 506, 509, 730
ApoI RAATTY 3 cut(s) 70, 1154, 1352
AsiGI ACCGGT 1 cut(s) 807
Asp700I GAANNNNTTC 2 cut(s) 174, 1134
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 7 cut(s) 515, 672, 774, 1080, 1088, 1431, 1599
AsuHPI GGTGA 2 cut(s) 467, 577
AvaII GGWCC 2 cut(s) 515, 774
BanII GRGCYC 1 cut(s) 585
BbrPI CACGTG 1 cut(s) 265
BbsI GAAGAC 2 cut(s) 959, 1529
BbvI GCAGC 3 cut(s) 493, 521, 717
BccI CCATC 2 cut(s) 137, 1460
BceAI ACGGC 2 cut(s) 214, 313
BciT130I CCWGG 1 cut(s) 1583
BciVI GTATCC 1 cut(s) 1390
BcoDI GTCTC 1 cut(s) 1381
BcuI ACTAGT 2 cut(s) 613, 878
BfaI CTAG 4 cut(s) 614, 879, 1347, 1467
BfmI CTRYAG 3 cut(s) 507, 792, 1411
BfoI RGCGCY 1 cut(s) 792
BfrI CTTAAG 1 cut(s) 1175
BfuI GTATCC 1 cut(s) 1390
BglI GCCNNNNNGGC 1 cut(s) 1087
BglII AGATCT 1 cut(s) 661
BisI GCNGC 4 cut(s) 293, 507, 510, 731
BlsI GCNGC 4 cut(s) 294, 508, 511, 732
Bme1390I CCNGG 1 cut(s) 1583
Bme18I GGWCC 2 cut(s) 515, 774
BmgBI CACGTC 1 cut(s) 820
BmgT120I GGNCC 7 cut(s) 515, 672, 774, 1080, 1088, 1431, 1599
BmiI GGNNCC 4 cut(s) 776, 1089, 1205, 1432
BmrFI CCNGG 1 cut(s) 1583
BmsI GCATC 2 cut(s) 595, 1185
BpiI GAAGAC 2 cut(s) 959, 1529
Bpu10I CCTNAGC 2 cut(s) 828, 1337
BpuEI CTTGAG 2 cut(s) 800, 849
BsaAI YACGTR 3 cut(s) 265, 352, 1123
BsaBI GATNNNNATC 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 1381
BsaJI CCNNGG 5 cut(s) 588, 1083, 1527, 1581, 1582
BsaWI WCCGGW 1 cut(s) 807
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 977, 1214
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 1 cut(s) 737
Bse3DI GCAATG 2 cut(s) 864, 1205
Bse8I GATNNNNATC 1 cut(s) 311
BseBI CCWGG 1 cut(s) 1583
BseDI CCNNGG 5 cut(s) 588, 1083, 1527, 1581, 1582
BseGI GGATG 2 cut(s) 424, 1200
BseJI GATNNNNATC 1 cut(s) 311
BseLI CCNNNNNNNGG 3 cut(s) 524, 977, 1214
BseMI GCAATG 2 cut(s) 864, 1205
BseMII CTCAG 1 cut(s) 1227
BseNI ACTGG 1 cut(s) 737
BseXI GCAGC 3 cut(s) 493, 521, 717
BshFI GGCC 8 cut(s) 327, 674, 1081, 1090, 1322, 1400, 1433, 1600
BshTI ACCGGT 1 cut(s) 807
BsiSI CCGG 2 cut(s) 808, 1266
BslFI GGGAC 2 cut(s) 347, 942
BslI CCNNNNNNNGG 3 cut(s) 524, 977, 1214
BsmAI GTCTC 1 cut(s) 1381
BsmFI GGGAC 2 cut(s) 347, 942
BsnI GGCC 8 cut(s) 327, 674, 1081, 1090, 1322, 1400, 1433, 1600
Bso31I GGTCTC 1 cut(s) 1381
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 4 cut(s) 279, 661, 1417, 1534
BspACI CCGC 3 cut(s) 292, 416, 549
BspANI GGCC 8 cut(s) 327, 674, 1081, 1090, 1322, 1400, 1433, 1600
BspCNI CTCAG 1 cut(s) 1228
BspHI TCATGA 2 cut(s) 564, 1278
BspLI GGNNCC 4 cut(s) 776, 1089, 1205, 1432
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 1425, 1529
BspTI CTTAAG 1 cut(s) 1175
BspTNI GGTCTC 1 cut(s) 1381
BsrDI GCAATG 2 cut(s) 864, 1205
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 1 cut(s) 737
BssAI RCCGGY 1 cut(s) 807
BssECI CCNNGG 5 cut(s) 588, 1083, 1527, 1581, 1582
BssMI GATC 4 cut(s) 279, 661, 1417, 1534
BssT1I CCWWGG 2 cut(s) 1083, 1527
Bst2UI CCWGG 1 cut(s) 1583
Bst4CI ACNGT 9 cut(s) 277, 485, 523, 589, 634, 757, 898, 1027, 1214
Bst6I CTCTTC 1 cut(s) 38
BstAFI CTTAAG 1 cut(s) 1175
BstAPI GCANNNNNTGC 1 cut(s) 301
BstBAI YACGTR 3 cut(s) 265, 352, 1123
BstC8I GCNNGC 4 cut(s) 270, 302, 697, 744
BstDEI CTNAG 3 cut(s) 828, 1236, 1337
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 424, 1200
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 1 cut(s) 791
BstKTI GATC 4 cut(s) 282, 664, 1420, 1537
BstMAI GTCTC 1 cut(s) 1381
BstMBI GATC 4 cut(s) 279, 661, 1417, 1534
BstMWI GCNNNNNNNGC 4 cut(s) 301, 739, 1043, 1087
BstNI CCWGG 1 cut(s) 1583
BstNSI RCATGY 3 cut(s) 362, 385, 1520
BstSCI CCNGG 1 cut(s) 1581
BstSFI CTRYAG 3 cut(s) 507, 792, 1411
BstV1I GCAGC 3 cut(s) 493, 521, 717
BstV2I GAAGAC 2 cut(s) 959, 1529
BstX2I RGATCY 2 cut(s) 661, 1417
BstYI RGATCY 2 cut(s) 661, 1417
BsuI GTATCC 1 cut(s) 1390
BsuRI GGCC 8 cut(s) 327, 674, 1081, 1090, 1322, 1400, 1433, 1600
BtgI CCRYGG 1 cut(s) 588
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 2 cut(s) 424, 1200
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 4 cut(s) 270, 302, 697, 744
CciI TCATGA 2 cut(s) 564, 1278
CfoI GCGC 1 cut(s) 791
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 7 cut(s) 515, 672, 774, 1080, 1088, 1431, 1599
Csp6I GTAC 3 cut(s) 630, 1333, 1514
CspAI ACCGGT 1 cut(s) 807
CviQI GTAC 3 cut(s) 630, 1333, 1514
DdeI CTNAG 3 cut(s) 828, 1236, 1337
DpnI GATC 4 cut(s) 281, 663, 1419, 1536
DpnII GATC 4 cut(s) 279, 661, 1417, 1534
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 431
Eco130I CCWWGG 2 cut(s) 1083, 1527
Eco147I AGGCCT 1 cut(s) 1400
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 1381
Eco47I GGWCC 2 cut(s) 515, 774
Eco57I CTGAAG 1 cut(s) 156
Eco72I CACGTG 1 cut(s) 265
EcoO109I RGGNCCY 2 cut(s) 774, 1599
EcoRI GAATTC 1 cut(s) 1154
EcoRII CCWGG 1 cut(s) 1581
EcoT14I CCWWGG 2 cut(s) 1083, 1527
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 2 cut(s) 1083, 1527
FaqI GGGAC 2 cut(s) 347, 942
Fnu4HI GCNGC 4 cut(s) 293, 507, 510, 731
FokI GGATG 2 cut(s) 431, 1207
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 4 cut(s) 293, 507, 510, 731
FspBI CTAG 4 cut(s) 614, 879, 1347, 1467
GlaI GCGC 1 cut(s) 790
GluI GCNGC 4 cut(s) 293, 507, 510, 731
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 8 cut(s) 327, 674, 1081, 1090, 1322, 1400, 1433, 1600
HapII CCGG 2 cut(s) 808, 1266
HhaI GCGC 1 cut(s) 791
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 697
HpaII CCGG 2 cut(s) 808, 1266
HphI GGTGA 2 cut(s) 467, 577
Hpy166II GTNNAC 1 cut(s) 458
Hpy188III TCNNGA 9 cut(s) 80, 104, 377, 565, 638, 971, 1279, 1347, 1421
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 8 cut(s) 110, 765, 1159, 1261, 1304, 1411, 1487, 1590
HpyCH4III ACNGT 9 cut(s) 277, 485, 523, 589, 634, 757, 898, 1027, 1214
HpyCH4IV ACGT 5 cut(s) 264, 351, 819, 1065, 1122
HpyCH4V TGCA 6 cut(s) 268, 287, 304, 509, 985, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 301, 739, 1043, 1087
HpyF3I CTNAG 3 cut(s) 828, 1236, 1337
HpySE526I ACGT 5 cut(s) 264, 351, 819, 1065, 1122
HspAI GCGC 1 cut(s) 789
Kzo9I GATC 4 cut(s) 279, 661, 1417, 1534
LmnI GCTCC 2 cut(s) 692, 1168
Lsp1109I GCAGC 3 cut(s) 493, 521, 717
LweI GCATC 2 cut(s) 595, 1185
MaeI CTAG 4 cut(s) 614, 879, 1347, 1467
MaeII ACGT 5 cut(s) 264, 351, 819, 1065, 1122
MaeIII GTNAC 5 cut(s) 241, 354, 536, 751, 887
MalI GATC 4 cut(s) 281, 663, 1419, 1536
MboI GATC 4 cut(s) 279, 661, 1417, 1534
MboII GAAGA 9 cut(s) 25, 614, 671, 838, 913, 959, 1230, 1319, 1534
MflI RGATCY 2 cut(s) 661, 1417
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 8 cut(s) 70, 974, 1039, 1134, 1154, 1352, 1435, 1498
MlyI GAGTC 6 cut(s) 446, 714, 973, 1247, 1363, 1479
MmeI TCCRAC 4 cut(s) 144, 542, 1030, 1221
MnlI CCTC 9 cut(s) 101, 317, 331, 674, 873, 1297, 1312, 1390, 1584
MroXI GAANNNNTTC 2 cut(s) 174, 1134
MseI TTAA 4 cut(s) 209, 618, 1176, 1458
MslI CAYNNNNRTG 2 cut(s) 408, 543
MspA1I CMGCKG 2 cut(s) 506, 512
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 2 cut(s) 808, 1266
MspR9I CCNGG 1 cut(s) 1583
MvaI CCWGG 1 cut(s) 1583
MwoI GCNNNNNNNGC 4 cut(s) 301, 739, 1043, 1087
NdeII GATC 4 cut(s) 279, 661, 1417, 1534
NlaIV GGNNCC 4 cut(s) 776, 1089, 1205, 1432
NmeAIII GCCGAG 1 cut(s) 36
NmuCI GTSAC 3 cut(s) 354, 536, 751
NspI RCATGY 3 cut(s) 362, 385, 1520
OliI CACNNNNGTG 1 cut(s) 543
PagI TCATGA 2 cut(s) 564, 1278
PasI CCCWGGG 1 cut(s) 1582
PceI AGGCCT 1 cut(s) 1400
PciI ACATGT 3 cut(s) 358, 381, 1516
PdmI GAANNNNTTC 2 cut(s) 174, 1134
PfeI GAWTC 5 cut(s) 170, 257, 312, 1019, 1282
PinAI ACCGGT 1 cut(s) 807
PkrI GCNGC 4 cut(s) 294, 508, 511, 732
PleI GAGTC 6 cut(s) 445, 713, 972, 1246, 1363, 1478
PmaCI CACGTG 1 cut(s) 265
PmlI CACGTG 1 cut(s) 265
PpsI GAGTC 6 cut(s) 445, 713, 972, 1246, 1363, 1478
Ppu21I YACGTR 3 cut(s) 265, 352, 1123
PpuMI RGGWCCY 1 cut(s) 774
PscI ACATGT 3 cut(s) 358, 381, 1516
Psp5II RGGWCCY 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 1581
PspCI CACGTG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 1581
PspN4I GGNNCC 4 cut(s) 776, 1089, 1205, 1432
PspPI GGNCC 7 cut(s) 515, 672, 774, 1080, 1088, 1431, 1599
PspPPI RGGWCCY 1 cut(s) 774
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 661, 1417
PvuII CAGCTG 2 cut(s) 506, 512
RsaI GTAC 3 cut(s) 631, 1334, 1515
RsaNI GTAC 3 cut(s) 630, 1333, 1514
RseI CAYNNNNRTG 2 cut(s) 408, 543
SaqAI TTAA 4 cut(s) 209, 618, 1176, 1458
SatI GCNGC 4 cut(s) 293, 507, 510, 731
Sau3AI GATC 4 cut(s) 279, 661, 1417, 1534
Sau96I GGNCC 7 cut(s) 515, 672, 774, 1080, 1088, 1431, 1599
SchI GAGTC 6 cut(s) 446, 714, 973, 1247, 1363, 1479
ScrFI CCNGG 1 cut(s) 1583
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 2 cut(s) 595, 1185
SfcI CTRYAG 3 cut(s) 507, 792, 1411
SfiI GGCCNNNNNGGCC 1 cut(s) 1087
SinI GGWCC 2 cut(s) 515, 774
SmiMI CAYNNNNRTG 2 cut(s) 408, 543
SmlI CTYRAG 3 cut(s) 779, 864, 1175
SmoI CTYRAG 3 cut(s) 779, 864, 1175
SpeI ACTAGT 2 cut(s) 613, 878
Sse9I AATT 8 cut(s) 70, 974, 1039, 1134, 1154, 1352, 1435, 1498
SseBI AGGCCT 1 cut(s) 1400
SsiI CCGC 3 cut(s) 292, 416, 549
SspI AATATT 1 cut(s) 1462
SspMI CTAG 4 cut(s) 614, 879, 1347, 1467
StuI AGGCCT 1 cut(s) 1400
StyD4I CCNGG 1 cut(s) 1581
StyI CCWWGG 2 cut(s) 1083, 1527
TaaI ACNGT 9 cut(s) 277, 485, 523, 589, 634, 757, 898, 1027, 1214
TaiI ACGT 5 cut(s) 267, 354, 822, 1068, 1125
TaqI TCGA 1 cut(s) 81
TasI AATT 8 cut(s) 70, 974, 1039, 1134, 1154, 1352, 1435, 1498
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 5 cut(s) 170, 257, 312, 1019, 1282
Tru1I TTAA 4 cut(s) 209, 618, 1176, 1458
Tru9I TTAA 4 cut(s) 209, 618, 1176, 1458
TscAI CASTG 1 cut(s) 744
TseFI GTSAC 3 cut(s) 354, 536, 751
TseI GCWGC 3 cut(s) 506, 509, 730
Tsp45I GTSAC 3 cut(s) 354, 536, 751
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 744
Vha464I CTTAAG 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 515, 774
XapI RAATTY 3 cut(s) 70, 1154, 1352
XbaI TCTAGA 1 cut(s) 1346
XceI RCATGY 3 cut(s) 362, 385, 1520
XcmI CCANNNNNNNNNTGG 1 cut(s) 1589
XmnI GAANNNNTTC 2 cut(s) 174, 1134
XspI CTAG 4 cut(s) 614, 879, 1347, 1467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.