Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011053

Physical Location & Seq

Genomic Coordinates Forward (+)

44498861 .. 44501345

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGAGCCTAAACATTGATTTAAACTTAAATGATGAGGACTCTGATGTAAATTTGGATAAAGATTCCATAGATGGTGAAGAGAATGAAATGGCAGAACCTGGCATTGGTATGGTATTTGTTTCACTTGAAGATGCAAGATCATATTATTTGAAGTATGCCAAATCTGTAGGATTTGGTGTTTCTGTTAAAAACAGTCGTCGATCAAGGGCATCTGGAGAATTCATTAATGCAATCTTTGCTTGTACAAGGTACGGGAAAAGACAAAATAGTAAGGCCACTAACCCTCGGCCTAGTTATAAAATTGGTTGTGAAGCGATTTTGCATGTGAGAAAGAAATATGGAAAATGGATTGTCCAAAATTTTGTCAAGGAACACAACCATGAACTCGTCCCTGAATATGCACATTATTTTCCATGTCATAGAAACATTTCATCTCTTGACATGAGCACTGCTAATGATTTTCATGCAGTTGGAGTACAAACAAGTACAATATATGCTGCAATGGCCAAACAACATAGGGGATATCAAAATATTGGATTTATAGAAAAGGATCTTAGAAATCATTTTGATAAAGTGCGGCGTTTAGAGCTAGCTGCAGCGGATGCTAATGCTATGCTTGATCTTTTTATGCACATGCAAGAAGAGAATCCCAATTTCTTTTATGCAGTGGACTTGGATGAGGACCAAAGTTTGAGAAATGTTTTTTGGGTTGATGCAAAAGGTCGTGAAGATTATAAGATTTTTGGAGACGTTGTTTCTTTTGATACTACATATATCACAAACAAGTACAAGATGCCATTTGCTCCGTTTATTGGTGTGAACAACCATTTTCAGTCTACACTACTTGGATGTGCATTGCTTGCAGACGAGACTACATCAACTTTTGTTTGGTTAATGCAGACATGGCTGAGAGCAATGGGAGGAAAACCGCTGGGTGCTATATTAACTGATCAAGACAAAGCTATGAAATCAGCCATTGTAGAGGTATTTCCAAATTCTCGACATCGCTTTTGTTTATGGCATATATTCATGAAAATCCCTCAAAAACTTGGTCAAGTGATCAAAGAAAATGAAGATTTTACTGAGATATTTGATAAATGCATTTACAATTCATGGACTAGTGAAGAGTTTGAGAAAGGATGGTGGGACATGATTGACAGATTTGAGCTCCACGACAATGAATGGCTTGCATCTTTGTTTGAAGATCGTTCATATTGGATTCATACTTACATGAGAGACACATTTTTTGCTGGAATGTCTACCACCCAAAGTTCTGAAAGCATAAATTCTTTTTTCGATAAATATTTGGGTAAGAAGACTACTTTGAAAGAGTTTGTTGGACAATACAATGTGGCTCTACAAGATAGACAAGAACAAGAAGCTCAAGCTGATTTCAGAACTTGGCACACACTACCTGCTTTCATGGCTCCTTCACCTTTTGAGAGAAAAATGTCCAAAGTTTACACACATGAAGTTTTCAAGAAGTTTCAAGTAGAGGTTTTAAGAGCTGGAGAATGCTATCCTAAAGAATTGAAGGAAGACAATGTGACTAAAACATTTGAAGTTGGAGATTTTCAGAAGAAATATGATTTCAAGGTGGAATGGAATGCAAGAAAGAAGGAGATTTATTGTGGTTGTCGCTTATTTGAATATAACAGGTTTCTTTGTAGACATGCTCTTGCTGTGTTCCACTCTTTAGGAGTTTTTGACATTCCATCTCATTATATACTAGAGCGGTGGACAAAGAATGTGAAGACCATATATAGCAGTACCATAAAGCAATCTCGAAAAGAAGTTAAGTACAGAAAATATCGCTTTGACAAATTGTTTCGAGAAGCTACAAAACTGAGTAAGGAAGGATCAATGTCTGATGAGAGTTTTGATATTGCATATCTTGGTCTAAAAGAAACCTTGAAAAGGTGTGCAGTGGTCAACCAATCAATCAAAAGCTCAGAATGTCAGTGTAGATGTGATAAGGATAATACGCAACAAACAAGAGTTCTTGACCCACAAGTGTTGAAGACAAAAGGAGCTCCAAAGAGAAGTATAAAGCCTGGAACGAACAAATGTAATAAAAGACATTGCAACAAGTCAAAGGAGGGACACACAAAATCATCAACTAGAGCATCAGTGGAGACGCATCTAGTTGCATCAACTATTGGTCTCCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

724

Amino Acids

84.13

Weight (kDa)

8.6

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	47 - 131	2.3e-25	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	215 - 334	6.9e-09	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	251 - 345	1.5e-30	MULE transposase domain
SWIM	PF04434	538 - 566	3.4e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76320 AT1G76320 AT1G76320 AT1G76320
fragaria_vesca	FvH4_7g34132
malus_domestica	MD01G1237500.v1.1 MD07G1310000.v1.1
prunus_persica	Prupe.2G327900_v2.0.a1
pyrus_communis	pycom01g24520
rosa_chinensis	RchiOBHm_Chr1g0384461
rosa_multiflora	Rmu_co8407315.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276680
rosa_rugosa	Rorug01G0447900 Rorug01G0448000 Rorug05G0131300
rosa_samantha	Rh1AG473200 Rh1BG431200 Rh1CG444400
rosa_wichuraiana	Rw1G039940 Rw4G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	297, 735
Acc36I	ACCTGC	1 cut(s)	1423
AccBSI	CCGCTC	1 cut(s)	1735
AccI	GTMKAC	3 cut(s)	836, 1259, 1669
AciI	CCGC	4 cut(s)	577, 599, 929, 1735
AclWI	GGATC	2 cut(s)	558, 1867
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	5 cut(s)	49, 218, 358, 994, 1285
AfaI	GTAC	7 cut(s)	244, 251, 477, 487, 788, 1771, 1802
AfiI	CCNNNNNNNGG	3 cut(s)	104, 812, 1917
AhlI	ACTAGT	1 cut(s)	1118
AjnI	CCWGG	2 cut(s)	97, 2053
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 688, 720
Alw21I	GWGCWC	3 cut(s)	449, 1170, 2035
Alw26I	GTCTC	5 cut(s)	741, 863, 1230, 2129, 2168
AlwI	GGATC	2 cut(s)	558, 1867
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	273, 287, 504
ApeKI	GCWGC	3 cut(s)	497, 593, 596
ApoI	RAATTY	5 cut(s)	49, 218, 358, 994, 1285
ArsI	GACNNNNNNTTYG	6 cut(s)	993, 1025, 1036, 1068, 1229, 1261
AseI	ATTAAT	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	86, 1425
AsuNHI	GCTAGC	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	506
BanII	GRGCYC	2 cut(s)	1170, 2035
BbsI	GAAGAC	4 cut(s)	1322, 1545, 1760, 2027
Bbv12I	GWGCWC	3 cut(s)	449, 1170, 2035
BbvI	GCAGC	3 cut(s)	484, 580, 608
BccI	CCATC	3 cut(s)	65, 1134, 1723
BciT130I	CCWGG	2 cut(s)	99, 2055
BclI	TGATCA	2 cut(s)	949, 1059
BcoDI	GTCTC	5 cut(s)	741, 863, 1230, 2129, 2168
BcuI	ACTAGT	1 cut(s)	1118
BfaI	CTAG	6 cut(s)	291, 590, 1119, 1730, 2121, 2144
BfmI	CTRYAG	2 cut(s)	165, 594
BfuAI	ACCTGC	1 cut(s)	1423
BisI	GCNGC	4 cut(s)	498, 578, 594, 597
BlsI	GCNGC	4 cut(s)	499, 579, 595, 598
Bme1390I	CCNGG	2 cut(s)	99, 2055
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	1428
BmrFI	CCNGG	2 cut(s)	99, 2055
BmsI	GCATC	9 cut(s)	121, 218, 592, 703, 783, 1199, 2135, 2149, 2159
BmtI	GCTAGC	1 cut(s)	593
BpiI	GAAGAC	4 cut(s)	1322, 1545, 1760, 2027
BpmI	CTGGAG	2 cut(s)	234, 1530
BpuEI	CTTGAG	1 cut(s)	1368
BsaI	GGTCTC	1 cut(s)	2168
BsaJI	CCNNGG	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 812, 1917
Bse3DI	GCAATG	4 cut(s)	507, 854, 921, 2080
BseBI	CCWGG	2 cut(s)	99, 2055
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	4 cut(s)	607, 682, 854, 1145
BseLI	CCNNNNNNNGG	3 cut(s)	104, 812, 1917
BseMI	GCAATG	4 cut(s)	507, 854, 921, 2080
BseMII	CTCAG	4 cut(s)	899, 1074, 1838, 1965
BseXI	GCAGC	3 cut(s)	484, 580, 608
BseYI	CCCAGC	1 cut(s)	931
BsgI	GTGCAG	1 cut(s)	1944
BshFI	GGCC	3 cut(s)	275, 289, 506
BsiHKAI	GWGCWC	3 cut(s)	449, 1170, 2035
BslFI	GGGAC	3 cut(s)	374, 1160, 2115
BslI	CCNNNNNNNGG	3 cut(s)	104, 812, 1917
BsmAI	GTCTC	5 cut(s)	741, 863, 1230, 2129, 2168
BsmBI	CGTCTC	2 cut(s)	741, 2129
BsmFI	GGGAC	3 cut(s)	374, 1160, 2115
BsmI	GAATGC	2 cut(s)	1520, 1612
BsnI	GGCC	3 cut(s)	275, 289, 506
Bso31I	GGTCTC	1 cut(s)	2168
Bsp1286I	GDGCHC	3 cut(s)	449, 1170, 2035
Bsp1407I	TGTACA	1 cut(s)	242
Bsp143I	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
BspACI	CCGC	4 cut(s)	577, 599, 929, 1735
BspANI	GGCC	3 cut(s)	275, 289, 506
BspCNI	CTCAG	4 cut(s)	900, 1075, 1839, 1964
BspHI	TCATGA	1 cut(s)	1029
BspLI	GGNNCC	1 cut(s)	1428
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	1423
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	558, 1867
BspTNI	GGTCTC	1 cut(s)	2168
BsrBI	CCGCTC	1 cut(s)	1735
BsrDI	GCAATG	4 cut(s)	507, 854, 921, 2080
BsrGI	TGTACA	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
Bst2UI	CCWGG	2 cut(s)	99, 2055
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	3 cut(s)	72, 636, 1119
BstAPI	GCANNNNNTGC	3 cut(s)	236, 602, 860
BstAUI	TGTACA	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	591, 861, 1188
BstDEI	CTNAG	5 cut(s)	554, 908, 1083, 1847, 1951
BstENI	CCTNNNNNAGG	1 cut(s)	1915
BstF5I	GGATG	4 cut(s)	607, 682, 854, 1145
BstKTI	GATC	8 cut(s)	140, 203, 553, 622, 952, 1062, 1207, 1862
BstMAI	GTCTC	5 cut(s)	741, 863, 1230, 2129, 2168
BstMBI	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
BstMWI	GCNNNNNNNGC	7 cut(s)	236, 503, 586, 602, 860, 904, 1424
BstNI	CCWGG	2 cut(s)	99, 2055
BstNSI	RCATGY	3 cut(s)	326, 637, 1676
BstSCI	CCNGG	2 cut(s)	97, 2053
BstSFI	CTRYAG	2 cut(s)	165, 594
BstV1I	GCAGC	3 cut(s)	484, 580, 608
BstV2I	GAAGAC	4 cut(s)	1322, 1545, 1760, 2027
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	275, 289, 506
BtgZI	GCGATG	1 cut(s)	989
BtsCI	GGATG	4 cut(s)	607, 682, 854, 1145
BtsI	GCAGTG	3 cut(s)	447, 672, 1932
BtsIMutI	CAGTG	5 cut(s)	447, 672, 1932, 1967, 2136
BveI	ACCTGC	1 cut(s)	1423
Cac8I	GCNNGC	3 cut(s)	591, 861, 1188
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	1029
Cfr13I	GGNCC	1 cut(s)	682
CseI	GACGC	1 cut(s)	2146
Csp6I	GTAC	7 cut(s)	243, 250, 476, 486, 787, 1770, 1801
CspCI	CAANNNNNGTGG	2 cut(s)	1998, 2033
CviQI	GTAC	7 cut(s)	243, 250, 476, 486, 787, 1770, 1801
DdeI	CTNAG	5 cut(s)	554, 908, 1083, 1847, 1951
DpnI	GATC	8 cut(s)	139, 202, 552, 621, 951, 1061, 1206, 1861
DpnII	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
DraI	TTTAAA	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	3 cut(s)	72, 636, 1119
EarI	CTCTTC	3 cut(s)	72, 636, 1119
Ecl136II	GAGCTC	2 cut(s)	1168, 2033
Eco24I	GRGCYC	2 cut(s)	1170, 2035
Eco31I	GGTCTC	1 cut(s)	2168
Eco32I	GATATC	1 cut(s)	524
Eco47I	GGWCC	1 cut(s)	682
Eco53kI	GAGCTC	2 cut(s)	1168, 2033
EcoICRI	GAGCTC	2 cut(s)	1168, 2033
EcoNI	CCTNNNNNAGG	1 cut(s)	1915
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	97, 2053
EcoRV	GATATC	1 cut(s)	524
EcoT22I	ATGCAT	1 cut(s)	1103
EcoT38I	GRGCYC	2 cut(s)	1170, 2035
Esp3I	CGTCTC	2 cut(s)	741, 2129
FaqI	GGGAC	3 cut(s)	374, 1160, 2115
FbaI	TGATCA	2 cut(s)	949, 1059
FblI	GTMKAC	3 cut(s)	836, 1259, 1669
Fnu4HI	GCNGC	4 cut(s)	498, 578, 594, 597
FokI	GGATG	4 cut(s)	614, 689, 861, 1152
FriOI	GRGCYC	2 cut(s)	1170, 2035
Fsp4HI	GCNGC	4 cut(s)	498, 578, 594, 597
FspBI	CTAG	6 cut(s)	291, 590, 1119, 1730, 2121, 2144
GluI	GCNGC	4 cut(s)	498, 578, 594, 597
GsaI	CCCAGC	1 cut(s)	935
GsuI	CTGGAG	2 cut(s)	234, 1530
HaeIII	GGCC	3 cut(s)	275, 289, 506
HgaI	GACGC	1 cut(s)	2146
HincII	GTYRAC	1 cut(s)	1933
HindII	GTYRAC	1 cut(s)	1933
HinfI	GANTC	4 cut(s)	38, 62, 646, 1219
HphI	GGTGA	2 cut(s)	86, 1425
Hpy166II	GTNNAC	8 cut(s)	670, 820, 837, 1260, 1462, 1670, 1740, 1933
Hpy188I	TCNGA	6 cut(s)	43, 1276, 1397, 1578, 1870, 1954
Hpy8I	GTNNAC	8 cut(s)	670, 820, 837, 1260, 1462, 1670, 1740, 1933
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	4 cut(s)	1440, 1528, 1612, 1850
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	750
HpyF10VI	GCNNNNNNNGC	7 cut(s)	236, 503, 586, 602, 860, 904, 1424
HpyF3I	CTNAG	5 cut(s)	554, 908, 1083, 1847, 1951
HpySE526I	ACGT	1 cut(s)	750
Ksp22I	TGATCA	2 cut(s)	949, 1059
Kzo9I	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
LmnI	GCTCC	5 cut(s)	808, 1173, 1432, 2030, 2038
Lsp1109I	GCAGC	3 cut(s)	484, 580, 608
LweI	GCATC	9 cut(s)	121, 218, 592, 703, 783, 1199, 2135, 2149, 2159
MaeI	CTAG	6 cut(s)	291, 590, 1119, 1730, 2121, 2144
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	1 cut(s)	1546
MalI	GATC	8 cut(s)	139, 202, 552, 621, 951, 1061, 1206, 1861
MbiI	CCGCTC	1 cut(s)	1735
MboI	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	449, 1170, 2035
MlsI	TGGCCA	1 cut(s)	506
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	451, 1318, 1546
MnlI	CCTC	8 cut(s)	28, 294, 673, 914, 976, 1050, 1489, 2092
Mox20I	TGGCCA	1 cut(s)	506
Mph1103I	ATGCAT	1 cut(s)	1103
MroXI	GAANNNNTTC	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	9 cut(s)	20, 26, 186, 225, 893, 944, 1502, 1797, 2173
MslI	CAYNNNNRTG	3 cut(s)	107, 378, 1176
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	2 cut(s)	599, 931
MspR9I	CCNGG	2 cut(s)	99, 2055
Mva1269I	GAATGC	2 cut(s)	1520, 1612
MvaI	CCWGG	2 cut(s)	99, 2055
MwoI	GCNNNNNNNGC	7 cut(s)	236, 503, 586, 602, 860, 904, 1424
NdeII	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
NheI	GCTAGC	1 cut(s)	589
NlaIV	GGNNCC	1 cut(s)	1428
NmeAIII	GCCGAG	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	1546
NsiI	ATGCAT	1 cut(s)	1103
NspI	RCATGY	3 cut(s)	326, 637, 1676
PagI	TCATGA	1 cut(s)	1029
PctI	GAATGC	2 cut(s)	1520, 1612
PdmI	GAANNNNTTC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	62, 646, 1219
PkrI	GCNGC	4 cut(s)	499, 579, 595, 598
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	225
PsiI	TTATAA	2 cut(s)	297, 735
Psp124BI	GAGCTC	2 cut(s)	1170, 2035
Psp6I	CCWGG	2 cut(s)	97, 2053
PspFI	CCCAGC	1 cut(s)	931
PspGI	CCWGG	2 cut(s)	97, 2053
PspN4I	GGNNCC	1 cut(s)	1428
PspPI	GGNCC	1 cut(s)	682
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	7 cut(s)	244, 251, 477, 487, 788, 1771, 1802
RsaNI	GTAC	7 cut(s)	243, 250, 476, 486, 787, 1770, 1801
RseI	CAYNNNNRTG	3 cut(s)	107, 378, 1176
SacI	GAGCTC	2 cut(s)	1170, 2035
SaqAI	TTAA	9 cut(s)	20, 26, 186, 225, 893, 944, 1502, 1797, 2173
SatI	GCNGC	4 cut(s)	498, 578, 594, 597
Sau3AI	GATC	8 cut(s)	137, 200, 550, 619, 949, 1059, 1204, 1859
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	99, 2055
SduI	GDGCHC	3 cut(s)	449, 1170, 2035
SfaNI	GCATC	9 cut(s)	121, 218, 592, 703, 783, 1199, 2135, 2149, 2159
SfcI	CTRYAG	2 cut(s)	165, 594
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	3 cut(s)	107, 378, 1176
SmlI	CTYRAG	1 cut(s)	1383
SmoI	CTYRAG	1 cut(s)	1383
SpeI	ACTAGT	1 cut(s)	1118
SsiI	CCGC	4 cut(s)	577, 599, 929, 1735
SspI	AATATT	2 cut(s)	532, 1304
SspMI	CTAG	6 cut(s)	291, 590, 1119, 1730, 2121, 2144
SstI	GAGCTC	2 cut(s)	1170, 2035
StyD4I	CCNGG	2 cut(s)	97, 2053
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	5 cut(s)	199, 1000, 1296, 1786, 1831
TatI	WGTACW	5 cut(s)	242, 475, 485, 786, 1800
TauI	GCSGC	1 cut(s)	580
TfiI	GAWTC	3 cut(s)	62, 646, 1219
Tru1I	TTAA	9 cut(s)	20, 26, 186, 225, 893, 944, 1502, 1797, 2173
Tru9I	TTAA	9 cut(s)	20, 26, 186, 225, 893, 944, 1502, 1797, 2173
TscAI	CASTG	5 cut(s)	454, 672, 1932, 1967, 2136
TseFI	GTSAC	1 cut(s)	1546
TseI	GCWGC	3 cut(s)	497, 593, 596
Tsp45I	GTSAC	1 cut(s)	1546
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	5 cut(s)	454, 672, 1932, 1967, 2136
VpaK11BI	GGWCC	1 cut(s)	682
VspI	ATTAAT	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	1915
XapI	RAATTY	5 cut(s)	49, 218, 358, 994, 1285
XceI	RCATGY	3 cut(s)	326, 637, 1676
XmiI	GTMKAC	3 cut(s)	836, 1259, 1669
XmnI	GAANNNNTTC	1 cut(s)	427
XspI	CTAG	6 cut(s)	291, 590, 1119, 1730, 2121, 2144
Zsp2I	ATGCAT	1 cut(s)	1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.