Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011053

Physical Location & Seq

Genomic Coordinates Forward (+)

198682 .. 204095

Gene Structure 5414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGGGACATATGAAAGCCTTTAGACCCATTACCAGCAGTTTTGAAGTTGGTGAGGTGGATGGTAAGTGCAGAGTGGATTTGAATTTTCCCACACCAACAACAACAACAACAGTGATGGAGGCCATTTCAATTGTAGAGGAGCCTCATGATGCCATGGAGTTTGAATCTCATGAAGCTGCATATGATTACTACAAAGCATATGCCAAGTCTGTGGGTTTCGGCACTGCTAAATTGAGCAGTCGTCGATCTAGGGCGTCCAAAGAATTCATTGATGCCAAATTTTCATGCATAAGATATGGAAACAAGCAGCAGTCCGATGATGCCATCAATCCCCGGCCTTCCCCCAAAATTGGTTGCAAGGCAAGCATGCATGTGAAGCGCAGGCCCAATGGTAATTGGTATGTCTATAGTTTCGTAAAGGAGCACAACCATGAGCTTTTACCGGCTCAAGCACATTTCTTTCGCAGCCACAGAAATGCAGACCCGCTTAAGAATAACGATGTTAGGATGCGAAGACGGAAGAATGTGAATTCAGTGTCCAGGTTATTCAGTGCATATCAAAATGTTGATTGTTTGGAGAGTTATTTGCGAAATCAGCATGATAAGGGACGGTCCTTGTCTCTAGAGTCAGGGGATGCTCAAGTGCTACTGGAATGCTTTATGCGCATGCAGGAAGAAAATCCAAAATTCTACTATGCAGTTGATCTAAATGAAGAGCACCGGTTGAGAAATATGTTCTGGGTAGACTCCAAAGGAATGGAAGACTACACCAACTTCAGTGATGTTGTTTTCTTTGACACCACATACTTCACAAACAAGTATAAAATGCCCTTGGTTCTTTTTATAGGAGTGAACCATCATATTCAACCCACGTTAATGGGTTGTGCATTCATTGCGGATGAGACGGTGTATACTTTTGTGTGGTTAATGCAGACATGGTTAATAGCAATGGGGGAACAAGCTCCACGAGTGATACTCTCTGACCAGAACGACGCCATCAAAGCGGCTATTGCAGCAGTATTTCCAGGCACACGCCATTGCTTTTCTTTGTGGCATATAATGGAGAAAATACACGGGCAGCTCGAGTTTTGGAGCATGTGGAATGATACTTTTATGGCCGAGTTTAATGAGTGTGTTTTTAAGTCCTGGTCAGAAGAACAATTTGACAAGAGATGGTGCAAACTGCTTGATAAGTTTAATCTGAGAGAAGTTGAATGGATTCAGTCCTTGTATGAAGATCGTACTCATTGGGTGCCCACTTTTATGAGAGATATATCCTTTGCTGGATTGTCTCCAACTTCACGGTCGACAAGTTTGAATTCATCATTTGACAAATATTTCCAAGCAGAAACTTCAGTACCAGAGTTTATGGAAAGTTACAGGGTAATTCTTGAAGATAGGTATGAAGAGGAAGCAAAAGCAAATTTTGATGCTTGGCATGAAACACCCGAGTTGAAGTCTCCATCACCTTTTGAGAAGCAACTGGCACTGGTGTACACACGGGAAGTTTTTAAAAACTTCCAAGTGGAGGTTTTGGGAGCAGCTGCTTGTCATCTTAAGAAAGAAAGTGAAGACATGACAACCACAACGTACAGTGTAAAAGACATTGAAGATGAACAGAATTATACAGTGGAGTGGAACGAATCGAAGTCGGATATATGTTGTTCGTGCCATTCATTTGAGTATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGCGGTGGACAAATACTGCTATGAGCAGGCATGCCATTGGCGAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGTTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACGAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGAGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCCGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACAGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGAGCAGTTTCCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGCTACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTCGCACCGGCACAGTTCCATAACGTGGCTTGTTCGACACCTGTGCAGGAGAATCGTCTCCCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

787

Amino Acids

90.5

Weight (kDa)

6.23

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	62 - 148	2.4e-28	FAR1 DNA-binding domain
MULE	PF10551	262 - 356	2.8e-28	MULE transposase domain
SWIM	PF04434	542 - 576	1.3e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76320 AT1G76320 AT1G76320 AT1G76320
fragaria_vesca	FvH4_7g34132
malus_domestica	MD01G1237500.v1.1 MD07G1310000.v1.1
prunus_persica	Prupe.2G327900_v2.0.a1
pyrus_communis	pycom01g24520
rosa_chinensis	RchiOBHm_Chr1g0384461
rosa_multiflora	Rmu_co8407315.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276680
rosa_rugosa	Rorug01G0447900 Rorug01G0448000 Rorug05G0131300
rosa_samantha	Rh1AG473200 Rh1BG431200 Rh1CG444400
rosa_wichuraiana	Rw1G039940 Rw4G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	1756
Acc65I	GGTACC	1 cut(s)	2146
AccB1I	GGYRCC	4 cut(s)	1252, 2146, 2251, 2275
AccB7I	CCANNNNNTGG	1 cut(s)	2320
AccI	GTMKAC	4 cut(s)	744, 911, 1307, 1858
AciI	CCGC	6 cut(s)	485, 896, 1004, 1768, 2222, 2258
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	7 cut(s)	82, 263, 278, 529, 686, 1318, 1423
AcuI	CTGAAG	2 cut(s)	760, 1338
AcyI	GRCGYC	2 cut(s)	254, 993
AfaI	GTAC	7 cut(s)	1243, 1359, 1496, 1592, 1824, 2080, 2148
AfiI	CCNNNNNNNGG	3 cut(s)	350, 1528, 2320
AflII	CTTAAG	2 cut(s)	488, 1556
AgeI	ACCGGT	1 cut(s)	720
AjnI	CCWGG	3 cut(s)	539, 1024, 1145
AluBI	AGCT	7 cut(s)	176, 436, 962, 1081, 1544, 1937, 2239
AluI	AGCT	7 cut(s)	176, 436, 962, 1081, 1544, 1937, 2239
Alw21I	GWGCWC	2 cut(s)	426, 720
Alw26I	GTCTC	6 cut(s)	624, 896, 1296, 1464, 2207, 2357
Ama87I	CYCGRG	2 cut(s)	1082, 1448
AoxI	GGCC	5 cut(s)	120, 335, 383, 1116, 2219
ApeKI	GCWGC	9 cut(s)	176, 307, 465, 1013, 1078, 1541, 1544, 1765, 2236
ApoI	RAATTY	7 cut(s)	82, 263, 278, 529, 686, 1318, 1423
ArsI	GACNNNNNNTTYG	2 cut(s)	2045, 2077
AsiGI	ACCGGT	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	1218
Asp718I	GGTACC	1 cut(s)	2146
AspA2I	CCTAGG	1 cut(s)	2096
AspLEI	GCGC	2 cut(s)	381, 666
AspS9I	GGNCC	4 cut(s)	384, 612, 1834, 2066
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	4 cut(s)	62, 1458, 1732, 1889
AsuNHI	GCTAGC	1 cut(s)	2084
AvaI	CYCGRG	2 cut(s)	1082, 1448
AvaII	GGWCC	3 cut(s)	612, 1834, 2066
AvrII	CCTAGG	1 cut(s)	2096
BaeGI	GKGCMC	1 cut(s)	1257
BaeI	ACNNNNGTAYC	2 cut(s)	1341, 1374
BanI	GGYRCC	4 cut(s)	1252, 2146, 2251, 2275
BauI	CACGAG	2 cut(s)	966, 1951
BbsI	GAAGAC	3 cut(s)	520, 768, 1578
Bbv12I	GWGCWC	2 cut(s)	426, 720
BbvCI	CCTCAGC	1 cut(s)	2151
BbvI	GCAGC	9 cut(s)	163, 319, 477, 1025, 1090, 1531, 1553, 1777, 2248
BccI	CCATC	9 cut(s)	53, 109, 332, 864, 1004, 1167, 1471, 2000, 2287
BcgI	CGANNNNNNTGC	4 cut(s)	2320, 2330, 2354, 2364
BciT130I	CCWGG	3 cut(s)	541, 1026, 1147
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	6 cut(s)	624, 896, 1296, 1464, 2207, 2357
BfaI	CTAG	4 cut(s)	249, 623, 2085, 2097
BfmI	CTRYAG	2 cut(s)	406, 1699
BfrI	CTTAAG	2 cut(s)	488, 1556
BfuAI	ACCTGC	1 cut(s)	1756
BlnI	CCTAGG	1 cut(s)	2096
BmcAI	AGTACT	1 cut(s)	2080
Bme1390I	CCNGG	4 cut(s)	334, 541, 1026, 1147
Bme18I	GGWCC	3 cut(s)	612, 1834, 2066
BmeT110I	CYCGRG	2 cut(s)	1082, 1448
BmgT120I	GGNCC	4 cut(s)	384, 612, 1834, 2066
BmiI	GGNNCC	5 cut(s)	141, 1254, 2148, 2253, 2277
BmrFI	CCNGG	4 cut(s)	334, 541, 1026, 1147
BmsI	GCATC	7 cut(s)	139, 262, 310, 498, 625, 1420, 2223
BmtI	GCTAGC	1 cut(s)	2088
BpiI	GAAGAC	3 cut(s)	520, 768, 1578
BplI	GAGNNNNNCTC	2 cut(s)	960, 992
Bpu10I	CCTNAGC	1 cut(s)	2151
BpuEI	CTTGAG	2 cut(s)	432, 624
BpuMI	CCSGG	1 cut(s)	334
BsaHI	GRCGYC	2 cut(s)	254, 993
BsaJI	CCNNGG	4 cut(s)	153, 332, 831, 2096
BsaWI	WCCGGW	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 1528, 2320
Bse118I	RCCGGY	3 cut(s)	442, 720, 2302
Bse1I	ACTGG	3 cut(s)	654, 1488, 1494
Bse3DI	GCAATG	5 cut(s)	891, 954, 1036, 1952, 1984
BseBI	CCWGG	3 cut(s)	541, 1026, 1147
BseDI	CCNNGG	4 cut(s)	153, 332, 831, 2096
BseGI	GGATG	5 cut(s)	64, 513, 640, 904, 1822
BseLI	CCNNNNNNNGG	3 cut(s)	350, 1528, 2320
BseMI	GCAATG	5 cut(s)	891, 954, 1036, 1952, 1984
BseMII	CTCAG	4 cut(s)	1193, 1910, 2165, 2202
BseNI	ACTGG	3 cut(s)	654, 1488, 1494
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	1257
BseXI	GCAGC	9 cut(s)	163, 319, 477, 1025, 1090, 1531, 1553, 1777, 2248
BsgI	GTGCAG	2 cut(s)	88, 2360
Bsh1285I	CGRYCG	1 cut(s)	1307
BshFI	GGCC	5 cut(s)	122, 337, 385, 1118, 2221
BshNI	GGYRCC	4 cut(s)	1252, 2146, 2251, 2275
BshTI	ACCGGT	1 cut(s)	720
BsiEI	CGRYCG	1 cut(s)	1307
BsiHKAI	GWGCWC	2 cut(s)	426, 720
BsiHKCI	CYCGRG	2 cut(s)	1082, 1448
BsiSI	CCGG	5 cut(s)	334, 443, 721, 2156, 2303
BslFI	GGGAC	3 cut(s)	18, 621, 2122
BslI	CCNNNNNNNGG	3 cut(s)	350, 1528, 2320
BsmAI	GTCTC	6 cut(s)	624, 896, 1296, 1464, 2207, 2357
BsmBI	CGTCTC	2 cut(s)	896, 2357
BsmFI	GGGAC	3 cut(s)	18, 621, 2122
BsmI	GAATGC	2 cut(s)	659, 887
BsnI	GGCC	5 cut(s)	122, 337, 385, 1118, 2221
BsoBI	CYCGRG	2 cut(s)	1082, 1448
Bsp1286I	GDGCHC	3 cut(s)	426, 720, 1257
Bsp1407I	TGTACA	1 cut(s)	1494
Bsp143I	GATC	3 cut(s)	245, 703, 1237
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	6 cut(s)	485, 896, 1004, 1768, 2222, 2258
BspANI	GGCC	5 cut(s)	122, 337, 385, 1118, 2221
BspCNI	CTCAG	4 cut(s)	1194, 1909, 2164, 2203
BspHI	TCATGA	2 cut(s)	145, 169
BspLI	GGNNCC	5 cut(s)	141, 1254, 2148, 2253, 2277
BspMAI	CTGCAG	1 cut(s)	1703
BspMI	ACCTGC	1 cut(s)	1756
BspOI	GCTAGC	1 cut(s)	2088
BspQI	GCTCTTC	1 cut(s)	708
BspT107I	GGYRCC	4 cut(s)	1252, 2146, 2251, 2275
BspTI	CTTAAG	2 cut(s)	488, 1556
BsrDI	GCAATG	5 cut(s)	891, 954, 1036, 1952, 1984
BsrFI	RCCGGY	3 cut(s)	442, 720, 2302
BsrGI	TGTACA	1 cut(s)	1494
BsrI	ACTGG	3 cut(s)	654, 1488, 1494
BssAI	RCCGGY	3 cut(s)	442, 720, 2302
BssECI	CCNNGG	4 cut(s)	153, 332, 831, 2096
BssMI	GATC	3 cut(s)	245, 703, 1237
BssNAI	GTATAC	1 cut(s)	912
BssNI	GRCGYC	2 cut(s)	254, 993
BssSI	CACGAG	2 cut(s)	966, 1951
BssT1I	CCWWGG	3 cut(s)	153, 831, 2096
Bst1107I	GTATAC	1 cut(s)	912
Bst2BI	CACGAG	2 cut(s)	966, 1951
Bst2UI	CCWGG	3 cut(s)	541, 1026, 1147
Bst4CI	ACNGT	7 cut(s)	112, 612, 907, 1305, 1595, 1630, 2310
Bst6I	CTCTTC	3 cut(s)	708, 1401, 2019
BstACI	GRCGYC	2 cut(s)	254, 993
BstAFI	CTTAAG	2 cut(s)	488, 1556
BstAPI	GCANNNNNTGC	2 cut(s)	893, 1922
BstAUI	TGTACA	1 cut(s)	1494
BstC8I	GCNNGC	7 cut(s)	364, 368, 383, 668, 1793, 1797, 2086
BstDEI	CTNAG	5 cut(s)	1202, 1830, 1896, 2151, 2211
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	5 cut(s)	64, 513, 640, 904, 1822
BstHHI	GCGC	2 cut(s)	381, 666
BstKTI	GATC	3 cut(s)	248, 706, 1240
BstMAI	GTCTC	6 cut(s)	624, 896, 1296, 1464, 2207, 2357
BstMBI	GATC	3 cut(s)	245, 703, 1237
BstMCI	CGRYCG	1 cut(s)	1307
BstNI	CCWGG	3 cut(s)	541, 1026, 1147
BstNSI	RCATGY	6 cut(s)	370, 374, 670, 1099, 1709, 1799
BstSCI	CCNGG	4 cut(s)	332, 539, 1024, 1145
BstSFI	CTRYAG	2 cut(s)	406, 1699
BstSLI	GKGCMC	1 cut(s)	1257
BstV1I	GCAGC	9 cut(s)	163, 319, 477, 1025, 1090, 1531, 1553, 1777, 2248
BstV2I	GAAGAC	3 cut(s)	520, 768, 1578
BstXI	CCANNNNNNTGG	5 cut(s)	211, 757, 877, 1730, 1873
BstZ17I	GTATAC	1 cut(s)	912
BsuRI	GGCC	5 cut(s)	122, 337, 385, 1118, 2221
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	5 cut(s)	64, 513, 640, 904, 1822
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	9 cut(s)	117, 222, 540, 556, 784, 1487, 1600, 1635, 2039
BveI	ACCTGC	1 cut(s)	1756
Cac8I	GCNNGC	7 cut(s)	364, 368, 383, 668, 1793, 1797, 2086
CciI	TCATGA	2 cut(s)	145, 169
CfoI	GCGC	2 cut(s)	381, 666
Cfr10I	RCCGGY	3 cut(s)	442, 720, 2302
Cfr13I	GGNCC	4 cut(s)	384, 612, 1834, 2066
CseI	GACGC	2 cut(s)	243, 1001
Csp6I	GTAC	7 cut(s)	1242, 1358, 1495, 1591, 1823, 2079, 2147
CspAI	ACCGGT	1 cut(s)	720
CviQI	GTAC	7 cut(s)	1242, 1358, 1495, 1591, 1823, 2079, 2147
DdeI	CTNAG	5 cut(s)	1202, 1830, 1896, 2151, 2211
DpnI	GATC	3 cut(s)	247, 705, 1239
DpnII	GATC	3 cut(s)	245, 703, 1237
DraI	TTTAAA	2 cut(s)	1513, 1941
EaeI	YGGCCR	1 cut(s)	1116
Eam1104I	CTCTTC	3 cut(s)	708, 1401, 2019
EarI	CTCTTC	3 cut(s)	708, 1401, 2019
Eco130I	CCWWGG	3 cut(s)	153, 831, 2096
Eco47I	GGWCC	3 cut(s)	612, 1834, 2066
Eco57I	CTGAAG	2 cut(s)	760, 1338
Eco88I	CYCGRG	2 cut(s)	1082, 1448
EcoRI	GAATTC	3 cut(s)	263, 529, 1318
EcoRII	CCWGG	3 cut(s)	539, 1024, 1145
EcoT14I	CCWWGG	3 cut(s)	153, 831, 2096
EcoT22I	ATGCAT	2 cut(s)	290, 372
ErhI	CCWWGG	3 cut(s)	153, 831, 2096
Esp3I	CGTCTC	2 cut(s)	896, 2357
FalI	AAGNNNNNCTT	2 cut(s)	1875, 1907
FaqI	GGGAC	3 cut(s)	18, 621, 2122
FauI	CCCGC	1 cut(s)	492
FauNDI	CATATG	3 cut(s)	9, 181, 199
FblI	GTMKAC	4 cut(s)	744, 911, 1307, 1858
FokI	GGATG	5 cut(s)	71, 520, 647, 911, 1829
FspAI	RTGCGCAY	1 cut(s)	665
FspBI	CTAG	4 cut(s)	249, 623, 2085, 2097
FspI	TGCGCA	1 cut(s)	665
GlaI	GCGC	2 cut(s)	380, 665
HaeIII	GGCC	5 cut(s)	122, 337, 385, 1118, 2221
HapII	CCGG	5 cut(s)	334, 443, 721, 2156, 2303
HgaI	GACGC	2 cut(s)	243, 1001
HhaI	GCGC	2 cut(s)	381, 666
Hin1I	GRCGYC	2 cut(s)	254, 993
Hin6I	GCGC	2 cut(s)	379, 664
HinP1I	GCGC	2 cut(s)	379, 664
HincII	GTYRAC	2 cut(s)	1308, 1859
HindII	GTYRAC	2 cut(s)	1308, 1859
HindIII	AAGCTT	1 cut(s)	1935
HinfI	GANTC	9 cut(s)	164, 626, 746, 1219, 1643, 1994, 2029, 2092, 2347
HpaII	CCGG	5 cut(s)	334, 443, 721, 2156, 2303
HphI	GGTGA	4 cut(s)	62, 1458, 1732, 1889
Hpy166II	GTNNAC	8 cut(s)	745, 853, 912, 1308, 1495, 1497, 1773, 1859
Hpy188I	TCNGA	8 cut(s)	316, 982, 1153, 1203, 1654, 2050, 2070, 2212
Hpy188III	TCNNGA	5 cut(s)	146, 170, 623, 1391, 1898
Hpy8I	GTNNAC	8 cut(s)	745, 853, 912, 1308, 1495, 1497, 1773, 1859
Hpy99I	CGWCG	4 cut(s)	246, 995, 1842, 1863
HpyAV	CCTTC	3 cut(s)	348, 1877, 2153
HpyCH4III	ACNGT	7 cut(s)	112, 612, 907, 1305, 1595, 1630, 2310
HpyCH4IV	ACGT	3 cut(s)	872, 1589, 2319
HpyF3I	CTNAG	5 cut(s)	1202, 1830, 1896, 2151, 2211
HpySE526I	ACGT	3 cut(s)	872, 1589, 2319
Hsp92I	GRCGYC	2 cut(s)	254, 993
HspAI	GCGC	2 cut(s)	379, 664
KpnI	GGTACC	1 cut(s)	2150
Kzo9I	GATC	3 cut(s)	245, 703, 1237
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	5 cut(s)	139, 421, 967, 1092, 1538
Lsp1109I	GCAGC	9 cut(s)	163, 319, 477, 1025, 1090, 1531, 1553, 1777, 2248
LweI	GCATC	7 cut(s)	139, 262, 310, 498, 625, 1420, 2223
MaeI	CTAG	4 cut(s)	249, 623, 2085, 2097
MaeII	ACGT	3 cut(s)	872, 1589, 2319
MaeIII	GTNAC	3 cut(s)	1376, 1841, 1887
MalI	GATC	3 cut(s)	247, 705, 1239
MboI	GATC	3 cut(s)	245, 703, 1237
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	3 cut(s)	426, 720, 1257
MlyI	GAGTC	5 cut(s)	635, 740, 1988, 2038, 2086
MmeI	TCCRAC	3 cut(s)	1319, 1632, 2152
Mph1103I	ATGCAT	2 cut(s)	290, 372
MroXI	GAANNNNTTC	1 cut(s)	1218
MslI	CAYNNNNRTG	5 cut(s)	371, 429, 474, 875, 1262
MspA1I	CMGCKG	2 cut(s)	1544, 1768
MspCI	CTTAAG	2 cut(s)	488, 1556
MspI	CCGG	5 cut(s)	334, 443, 721, 2156, 2303
MspR9I	CCNGG	4 cut(s)	334, 541, 1026, 1147
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	2 cut(s)	659, 887
MvaI	CCWGG	3 cut(s)	541, 1026, 1147
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	3 cut(s)	9, 181, 199
NdeII	GATC	3 cut(s)	245, 703, 1237
NheI	GCTAGC	1 cut(s)	2084
NlaIV	GGNNCC	5 cut(s)	141, 1254, 2148, 2253, 2277
NmeAIII	GCCGAG	2 cut(s)	1144, 1976
NmuCI	GTSAC	1 cut(s)	1887
NsbI	TGCGCA	1 cut(s)	665
NsiI	ATGCAT	2 cut(s)	290, 372
NspI	RCATGY	6 cut(s)	370, 374, 670, 1099, 1709, 1799
PaeI	GCATGC	3 cut(s)	370, 670, 1799
PaeR7I	CTCGAG	1 cut(s)	1082
PagI	TCATGA	2 cut(s)	145, 169
PciSI	GCTCTTC	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	1080
PctI	GAATGC	2 cut(s)	659, 887
PdmI	GAANNNNTTC	1 cut(s)	1218
PfeI	GAWTC	4 cut(s)	164, 1219, 1643, 2347
PflMI	CCANNNNNTGG	1 cut(s)	2320
PinAI	ACCGGT	1 cut(s)	720
PleI	GAGTC	5 cut(s)	634, 740, 1988, 2037, 2086
PpsI	GAGTC	5 cut(s)	634, 740, 1988, 2037, 2086
Psp6I	CCWGG	3 cut(s)	539, 1024, 1145
PspGI	CCWGG	3 cut(s)	539, 1024, 1145
PspN4I	GGNNCC	5 cut(s)	141, 1254, 2148, 2253, 2277
PspPI	GGNCC	4 cut(s)	384, 612, 1834, 2066
PspXI	VCTCGAGB	1 cut(s)	1082
PstI	CTGCAG	1 cut(s)	1703
PvuII	CAGCTG	1 cut(s)	1544
RsaI	GTAC	7 cut(s)	1243, 1359, 1496, 1592, 1824, 2080, 2148
RsaNI	GTAC	7 cut(s)	1242, 1358, 1495, 1591, 1823, 2079, 2147
RseI	CAYNNNNRTG	5 cut(s)	371, 429, 474, 875, 1262
SalI	GTCGAC	2 cut(s)	1306, 1857
SapI	GCTCTTC	1 cut(s)	708
Sau3AI	GATC	3 cut(s)	245, 703, 1237
Sau96I	GGNCC	4 cut(s)	384, 612, 1834, 2066
ScaI	AGTACT	1 cut(s)	2080
SchI	GAGTC	5 cut(s)	635, 740, 1988, 2038, 2086
ScrFI	CCNGG	4 cut(s)	334, 541, 1026, 1147
SduI	GDGCHC	3 cut(s)	426, 720, 1257
SfaNI	GCATC	7 cut(s)	139, 262, 310, 498, 625, 1420, 2223
SfcI	CTRYAG	2 cut(s)	406, 1699
Sfr274I	CTCGAG	1 cut(s)	1082
SinI	GGWCC	3 cut(s)	612, 1834, 2066
SlaI	CTCGAG	1 cut(s)	1082
SmiMI	CAYNNNNRTG	5 cut(s)	371, 429, 474, 875, 1262
SmlI	CTYRAG	5 cut(s)	447, 488, 639, 1082, 1556
SmoI	CTYRAG	5 cut(s)	447, 488, 639, 1082, 1556
SphI	GCATGC	3 cut(s)	370, 670, 1799
SsiI	CCGC	6 cut(s)	485, 896, 1004, 1768, 2222, 2258
SspI	AATATT	2 cut(s)	1337, 1872
SspMI	CTAG	4 cut(s)	249, 623, 2085, 2097
StyD4I	CCNGG	4 cut(s)	332, 539, 1024, 1145
StyI	CCWWGG	3 cut(s)	153, 831, 2096
TaaI	ACNGT	7 cut(s)	112, 612, 907, 1305, 1595, 1630, 2310
TaiI	ACGT	3 cut(s)	875, 1592, 2322
TaqI	TCGA	6 cut(s)	244, 1083, 1307, 1646, 1858, 2330
TatI	WGTACW	2 cut(s)	1494, 2078
TauI	GCSGC	2 cut(s)	1007, 2224
TfiI	GAWTC	4 cut(s)	164, 1219, 1643, 2347
TscAI	CASTG	9 cut(s)	117, 229, 540, 556, 784, 1494, 1600, 1635, 2039
TseFI	GTSAC	1 cut(s)	1887
TseI	GCWGC	9 cut(s)	176, 307, 465, 1013, 1078, 1541, 1544, 1765, 2236
Tsp45I	GTSAC	1 cut(s)	1887
TspGWI	ACGGA	2 cut(s)	532, 1826
TspRI	CASTG	9 cut(s)	117, 229, 540, 556, 784, 1494, 1600, 1635, 2039
Van91I	CCANNNNNTGG	1 cut(s)	2320
Vha464I	CTTAAG	2 cut(s)	488, 1556
VpaK11BI	GGWCC	3 cut(s)	612, 1834, 2066
XapI	RAATTY	7 cut(s)	82, 263, 278, 529, 686, 1318, 1423
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	6 cut(s)	370, 374, 670, 1099, 1709, 1799
XhoI	CTCGAG	1 cut(s)	1082
XmaJI	CCTAGG	1 cut(s)	2096
XmiI	GTMKAC	4 cut(s)	744, 911, 1307, 1858
XmnI	GAANNNNTTC	1 cut(s)	1218
XspI	CTAG	4 cut(s)	249, 623, 2085, 2097
ZrmI	AGTACT	1 cut(s)	2080
Zsp2I	ATGCAT	2 cut(s)	290, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.