Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011053

Physical Location & Seq

Genomic Coordinates Reverse (-)

54696192 .. 54699135

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG431200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGGGACATATGAAAACCTTTAGACCCATTACCAGCAGTTTTGAAGTTGGTGAGGTGGATGGTAAGTGCAGAGTGGATTTGAATTTTCCCACACCAACAACAACAACAGTGATGGAGGCCATTTCAATTGTAGAGGAGCCTCATGATGCCATGGAGTTTGAATCTCATGAAGCTGCATATGATTACTACAAAGCATACGCCAAGTCTGTGGGTTTCGGCACTGCTAAATTGAGCAGTCGTCGATCTAGGGCGTCCAAAGAATTCATTGATGCCAAATTTTCATGCATAAGATATGGAAACAAGCAGCAGTCCGATGATGCCATCAATCCCCGGCCTTCCCCCAAAATTGGTTGCAAGGCAAGCATGCATGTGAAGCGCAGGCCCAATGGTAATTGGTATGTCTATAGTTTCGTAAAGGAGCACAACCATGAGCTTTTACCGGCTCAAGCACATTTCTTTCGCAGCCACAGAAATGCAGACCCGCTTAAGAATAACGATGTTAGGATGCGAAGACGGAAGAATGTGAATTCAGTGTCCAGCTTATTCAGTGCATATCAAAATGTTGATTGTTTAGAGAGTTATTTGAGAAATCAGCATGATAAGGGACGGTCCTTGTCTCTAGAGTCAGGGGATGCTCAAGTGCTACTGGAATGCTTTATGCACATGCAGGAAGAAAATCCAAAATTCTACTATGCAGTTGATCTAAATGAAGAGCACCGGTTGAGAAATGTGTTCTGGGTAGACTCCAAAGGAATGGAAGACTACACCAACTTCAGTGATGTTGTTTTCTTTGACACCACATACTTCACAAACAAGTATAAACTGCCCTTGGTTCTTTTTATAGGAGTGAACCATCATATTCAACCCACGTTAATGGGTTGTGCATTGATTGCGGATGAGACGGTTTATACTTTTGTGTGGTTAATGCAGACATGGTTAATAGCAATGGGGGAACAAGCTCCACGAGCGATACTCTCTGACCAGAACGACGCCATCAAAGCGGCTATTGCAGCAGTATTTCCAGGCACACGCCATTGCTTTTCTTTGTGGCATATAATGGAGAAAATACACGGGCAGCTCGAGTTTTGGAGCATGTGGAATGATACTTTTATGGCCGAGTTTAATGAGTGTGTTTTTAAGTCCTGGTCAGAAGAACAATTTGACAAGAGATGGTGCAAACTGCTTGATAAATTTAATCTGAGAGAAGTCGAATGGATTCAGTCCTTGTATGAAGATCGTACTCATTGGGTGCCCACTTTCATGAGAGATATATCCTTTGCTGGATTGTCTCCAACTTCACGGTCGACAAGTTTGAATTCATCATTTGACAAATATTTCCAAGCGGAAACTTCAGTACCGGAGTTTATGGAAAGTTACAGGGTAATTCTTGAAGATAGGTATGAAGAGGAAGCAAAAGCAAATTTTGATGCTTGGCATGAAACACCCGAGTTGAAGTCTCCATCACCTTTTGAGAAGCAACTGGCACTGGTGTACACACGGGAAGTTTTTAAAAACTTCCAAGTGGAGGTTTTGGGAGCAGCTGCTTGTCATCTTAAGAAAGAAAGTGAAGACATGACAACCACAACATACAGTGTAAAAGACATTGAAGATGAACAGAATTATACAGTGGAGTGGAACGAATCGAAGTCGGATATATGTTGTTCGTGCCATTCATTTGAGTATAAAGGTTATCTCTGCAGACACGCTATTGTTGTTCTCCAAATGTCTGGTGTTTTCACCATACCTGCCAAATATGTATTGCAGCGGTGGACAAATACTGCTATGAGCAGGCATGCCATTGGCGAAAAATTGGATGAGGTACAATCTAAGGTCCGTCGTTACAATGATTTATGTCGACGAGCCATAATATTGGGTGAAGAAGGGTCACTTTCTCAGGAGAGTTATGATGTAGCATTATGTGCCATAAAAGAAGCTTTAAAGCAATGCACTAGTTTGAACACCTCTGTTGAAAGCAATGCAAAACCTAATGACTCGGCAATAGATGGTATTTGTGGTATTGAAGTGAGTCAGTGTGGTATGACATCTGATGACAAGATTTTTGGTCCGAAAGTGAGTACTGCTAGCAAGACTCCTAGGAGAGTTGGGACTGGGAAAGTGGTGGCAAGGCATGGGAAAGGAAAGGTACCTCAGCCGGAAGGTATGAGAGTTGGAACACAAGACCAGTTTTCCCAAATGCAAGTTTGTTCTGAGACAAGGCCGCCTATGCTGATGCAGCTACATAATGTGGTGCCTCCGCAGTTGCATAATATGGTGCCATCAATGTTTCAAAATGTCGCACCGGCACAGTTCCATAACGTGGCTTGTTCGACACCTGTGCAGGAGAATCGTCTCCCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009639 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042752 GO:0042753 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0104004 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

786

Amino Acids

90.18

Weight (kDa)

6.2

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	61 - 147	2.4e-28	FAR1 DNA-binding domain
MULE	PF10551	261 - 355	1.9e-27	MULE transposase domain
SWIM	PF04434	541 - 575	1.3e-08	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76320 AT1G76320 AT1G76320 AT1G76320
fragaria_vesca	FvH4_7g34132
malus_domestica	MD01G1237500.v1.1 MD07G1310000.v1.1
prunus_persica	Prupe.2G327900_v2.0.a1
pyrus_communis	pycom01g24520
rosa_chinensis	RchiOBHm_Chr1g0384461
rosa_multiflora	Rmu_co8407315.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276680
rosa_rugosa	Rorug01G0447900 Rorug01G0448000 Rorug05G0131300
rosa_samantha	Rh1AG473200 Rh1BG431200 Rh1CG444400
rosa_wichuraiana	Rw1G039940 Rw4G020470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1753
Acc65I	GGTACC	1 cut(s)	2143
AccB1I	GGYRCC	4 cut(s)	1249, 2143, 2248, 2272
AccB7I	CCANNNNNTGG	1 cut(s)	2317
AccI	GTMKAC	3 cut(s)	741, 1304, 1855
AciI	CCGC	7 cut(s)	482, 893, 1001, 1343, 1765, 2219, 2255
AcoI	YGGCCR	1 cut(s)	1113
AcsI	RAATTY	8 cut(s)	82, 260, 275, 526, 683, 1190, 1315, 1420
AcuI	CTGAAG	2 cut(s)	757, 1335
AcyI	GRCGYC	2 cut(s)	251, 990
AfaI	GTAC	6 cut(s)	1240, 1356, 1493, 1821, 2077, 2145
AfiI	CCNNNNNNNGG	3 cut(s)	347, 1525, 2317
AflII	CTTAAG	2 cut(s)	485, 1553
AgeI	ACCGGT	1 cut(s)	717
AhlI	ACTAGT	1 cut(s)	1949
AjnI	CCWGG	2 cut(s)	1021, 1142
AluBI	AGCT	8 cut(s)	173, 433, 540, 959, 1078, 1541, 1934, 2236
AluI	AGCT	8 cut(s)	173, 433, 540, 959, 1078, 1541, 1934, 2236
Alw21I	GWGCWC	2 cut(s)	423, 717
Alw26I	GTCTC	6 cut(s)	621, 893, 1293, 1461, 2204, 2354
Ama87I	CYCGRG	2 cut(s)	1079, 1445
AoxI	GGCC	5 cut(s)	117, 332, 380, 1113, 2216
ApeKI	GCWGC	9 cut(s)	173, 304, 462, 1010, 1075, 1538, 1541, 1762, 2233
ApoI	RAATTY	8 cut(s)	82, 260, 275, 526, 683, 1190, 1315, 1420
ArsI	GACNNNNNNTTYG	2 cut(s)	2042, 2074
AsiGI	ACCGGT	1 cut(s)	717
Asp700I	GAANNNNTTC	1 cut(s)	1215
Asp718I	GGTACC	1 cut(s)	2143
AspA2I	CCTAGG	1 cut(s)	2093
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	4 cut(s)	381, 609, 1831, 2063
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	4 cut(s)	62, 1455, 1729, 1886
AsuNHI	GCTAGC	1 cut(s)	2081
AvaI	CYCGRG	2 cut(s)	1079, 1445
AvaII	GGWCC	3 cut(s)	609, 1831, 2063
AvrII	CCTAGG	1 cut(s)	2093
BaeGI	GKGCMC	1 cut(s)	1254
BaeI	ACNNNNGTAYC	2 cut(s)	1338, 1371
BanI	GGYRCC	4 cut(s)	1249, 2143, 2248, 2272
BauI	CACGAG	1 cut(s)	963
BbsI	GAAGAC	3 cut(s)	517, 765, 1575
Bbv12I	GWGCWC	2 cut(s)	423, 717
BbvCI	CCTCAGC	1 cut(s)	2148
BbvI	GCAGC	9 cut(s)	160, 316, 474, 1022, 1087, 1528, 1550, 1774, 2245
BccI	CCATC	9 cut(s)	53, 106, 329, 861, 1001, 1164, 1468, 1997, 2284
BcgI	CGANNNNNNTGC	4 cut(s)	2317, 2327, 2351, 2361
BciT130I	CCWGG	2 cut(s)	1023, 1144
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	6 cut(s)	621, 893, 1293, 1461, 2204, 2354
BcuI	ACTAGT	1 cut(s)	1949
BfaI	CTAG	5 cut(s)	246, 620, 1950, 2082, 2094
BfmI	CTRYAG	2 cut(s)	403, 1696
BfrI	CTTAAG	2 cut(s)	485, 1553
BfuAI	ACCTGC	1 cut(s)	1753
BlnI	CCTAGG	1 cut(s)	2093
BmcAI	AGTACT	1 cut(s)	2077
Bme1390I	CCNGG	3 cut(s)	331, 1023, 1144
Bme18I	GGWCC	3 cut(s)	609, 1831, 2063
BmeT110I	CYCGRG	2 cut(s)	1079, 1445
BmgT120I	GGNCC	4 cut(s)	381, 609, 1831, 2063
BmiI	GGNNCC	5 cut(s)	138, 1251, 2145, 2250, 2274
BmrFI	CCNGG	3 cut(s)	331, 1023, 1144
BmrI	ACTGGG	1 cut(s)	2118
BmsI	GCATC	7 cut(s)	136, 259, 307, 495, 622, 1417, 2220
BmtI	GCTAGC	1 cut(s)	2085
BmuI	ACTGGG	1 cut(s)	2118
BpiI	GAAGAC	3 cut(s)	517, 765, 1575
BplI	GAGNNNNNCTC	2 cut(s)	957, 989
Bpu10I	CCTNAGC	1 cut(s)	2148
BpuEI	CTTGAG	2 cut(s)	429, 621
BpuMI	CCSGG	1 cut(s)	331
BsaHI	GRCGYC	2 cut(s)	251, 990
BsaJI	CCNNGG	4 cut(s)	150, 329, 828, 2093
BsaWI	WCCGGW	2 cut(s)	717, 1357
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 1525, 2317
Bse118I	RCCGGY	3 cut(s)	439, 717, 2299
Bse1I	ACTGG	5 cut(s)	651, 1485, 1491, 2113, 2182
Bse3DI	GCAATG	4 cut(s)	951, 1033, 1949, 1981
BseBI	CCWGG	2 cut(s)	1023, 1144
BseDI	CCNNGG	4 cut(s)	150, 329, 828, 2093
BseGI	GGATG	5 cut(s)	64, 510, 637, 901, 1819
BseLI	CCNNNNNNNGG	3 cut(s)	347, 1525, 2317
BseMI	GCAATG	4 cut(s)	951, 1033, 1949, 1981
BseMII	CTCAG	4 cut(s)	1190, 1907, 2162, 2199
BseNI	ACTGG	5 cut(s)	651, 1485, 1491, 2113, 2182
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	1254
BseXI	GCAGC	9 cut(s)	160, 316, 474, 1022, 1087, 1528, 1550, 1774, 2245
BsgI	GTGCAG	2 cut(s)	88, 2357
Bsh1285I	CGRYCG	1 cut(s)	1304
BshFI	GGCC	5 cut(s)	119, 334, 382, 1115, 2218
BshNI	GGYRCC	4 cut(s)	1249, 2143, 2248, 2272
BshTI	ACCGGT	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	1304
BsiHKAI	GWGCWC	2 cut(s)	423, 717
BsiHKCI	CYCGRG	2 cut(s)	1079, 1445
BsiSI	CCGG	6 cut(s)	331, 440, 718, 1358, 2153, 2300
BslFI	GGGAC	3 cut(s)	18, 618, 2119
BslI	CCNNNNNNNGG	3 cut(s)	347, 1525, 2317
BsmAI	GTCTC	6 cut(s)	621, 893, 1293, 1461, 2204, 2354
BsmBI	CGTCTC	2 cut(s)	893, 2354
BsmFI	GGGAC	3 cut(s)	18, 618, 2119
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	5 cut(s)	119, 334, 382, 1115, 2218
BsoBI	CYCGRG	2 cut(s)	1079, 1445
Bsp1286I	GDGCHC	3 cut(s)	423, 717, 1254
Bsp1407I	TGTACA	1 cut(s)	1491
Bsp143I	GATC	3 cut(s)	242, 700, 1234
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	7 cut(s)	482, 893, 1001, 1343, 1765, 2219, 2255
BspANI	GGCC	5 cut(s)	119, 334, 382, 1115, 2218
BspCNI	CTCAG	4 cut(s)	1191, 1906, 2161, 2200
BspHI	TCATGA	3 cut(s)	142, 166, 1260
BspLI	GGNNCC	5 cut(s)	138, 1251, 2145, 2250, 2274
BspMAI	CTGCAG	1 cut(s)	1700
BspMI	ACCTGC	1 cut(s)	1753
BspOI	GCTAGC	1 cut(s)	2085
BspQI	GCTCTTC	1 cut(s)	705
BspT107I	GGYRCC	4 cut(s)	1249, 2143, 2248, 2272
BspTI	CTTAAG	2 cut(s)	485, 1553
BsrDI	GCAATG	4 cut(s)	951, 1033, 1949, 1981
BsrFI	RCCGGY	3 cut(s)	439, 717, 2299
BsrGI	TGTACA	1 cut(s)	1491
BsrI	ACTGG	5 cut(s)	651, 1485, 1491, 2113, 2182
BssAI	RCCGGY	3 cut(s)	439, 717, 2299
BssECI	CCNNGG	4 cut(s)	150, 329, 828, 2093
BssMI	GATC	3 cut(s)	242, 700, 1234
BssNI	GRCGYC	2 cut(s)	251, 990
BssSI	CACGAG	1 cut(s)	963
BssT1I	CCWWGG	3 cut(s)	150, 828, 2093
Bst2BI	CACGAG	1 cut(s)	963
Bst2UI	CCWGG	2 cut(s)	1023, 1144
Bst4CI	ACNGT	7 cut(s)	109, 609, 904, 1302, 1592, 1627, 2307
Bst6I	CTCTTC	2 cut(s)	705, 1398
BstACI	GRCGYC	2 cut(s)	251, 990
BstAFI	CTTAAG	2 cut(s)	485, 1553
BstAPI	GCANNNNNTGC	2 cut(s)	890, 1919
BstAUI	TGTACA	1 cut(s)	1491
BstC8I	GCNNGC	6 cut(s)	361, 365, 380, 1790, 1794, 2083
BstDEI	CTNAG	6 cut(s)	1199, 1827, 1893, 2148, 2208, 2355
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	5 cut(s)	64, 510, 637, 901, 1819
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	245, 703, 1237
BstMAI	GTCTC	6 cut(s)	621, 893, 1293, 1461, 2204, 2354
BstMBI	GATC	3 cut(s)	242, 700, 1234
BstMCI	CGRYCG	1 cut(s)	1304
BstNI	CCWGG	2 cut(s)	1023, 1144
BstNSI	RCATGY	5 cut(s)	367, 371, 667, 1096, 1796
BstSCI	CCNGG	3 cut(s)	329, 1021, 1142
BstSFI	CTRYAG	2 cut(s)	403, 1696
BstSLI	GKGCMC	1 cut(s)	1254
BstV1I	GCAGC	9 cut(s)	160, 316, 474, 1022, 1087, 1528, 1550, 1774, 2245
BstV2I	GAAGAC	3 cut(s)	517, 765, 1575
BstXI	CCANNNNNNTGG	5 cut(s)	208, 754, 874, 1727, 1870
BsuRI	GGCC	5 cut(s)	119, 334, 382, 1115, 2218
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	5 cut(s)	64, 510, 637, 901, 1819
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	9 cut(s)	114, 219, 537, 553, 781, 1484, 1597, 1632, 2036
BveI	ACCTGC	1 cut(s)	1753
Cac8I	GCNNGC	6 cut(s)	361, 365, 380, 1790, 1794, 2083
CciI	TCATGA	3 cut(s)	142, 166, 1260
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	3 cut(s)	439, 717, 2299
Cfr13I	GGNCC	4 cut(s)	381, 609, 1831, 2063
CseI	GACGC	2 cut(s)	240, 998
Csp6I	GTAC	6 cut(s)	1239, 1355, 1492, 1820, 2076, 2144
CspAI	ACCGGT	1 cut(s)	717
CviQI	GTAC	6 cut(s)	1239, 1355, 1492, 1820, 2076, 2144
DdeI	CTNAG	6 cut(s)	1199, 1827, 1893, 2148, 2208, 2355
DpnI	GATC	3 cut(s)	244, 702, 1236
DpnII	GATC	3 cut(s)	242, 700, 1234
DraI	TTTAAA	2 cut(s)	1510, 1938
EaeI	YGGCCR	1 cut(s)	1113
Eam1104I	CTCTTC	2 cut(s)	705, 1398
EarI	CTCTTC	2 cut(s)	705, 1398
Eco130I	CCWWGG	3 cut(s)	150, 828, 2093
Eco47I	GGWCC	3 cut(s)	609, 1831, 2063
Eco57I	CTGAAG	2 cut(s)	757, 1335
Eco88I	CYCGRG	2 cut(s)	1079, 1445
EcoRI	GAATTC	3 cut(s)	260, 526, 1315
EcoRII	CCWGG	2 cut(s)	1021, 1142
EcoT14I	CCWWGG	3 cut(s)	150, 828, 2093
EcoT22I	ATGCAT	2 cut(s)	287, 369
ErhI	CCWWGG	3 cut(s)	150, 828, 2093
Esp3I	CGTCTC	2 cut(s)	893, 2354
FalI	AAGNNNNNCTT	2 cut(s)	1872, 1904
FaqI	GGGAC	3 cut(s)	18, 618, 2119
FauI	CCCGC	1 cut(s)	489
FauNDI	CATATG	2 cut(s)	9, 178
FblI	GTMKAC	3 cut(s)	741, 1304, 1855
FokI	GGATG	5 cut(s)	71, 517, 644, 908, 1826
FspBI	CTAG	5 cut(s)	246, 620, 1950, 2082, 2094
GlaI	GCGC	1 cut(s)	377
HaeIII	GGCC	5 cut(s)	119, 334, 382, 1115, 2218
HapII	CCGG	6 cut(s)	331, 440, 718, 1358, 2153, 2300
HgaI	GACGC	2 cut(s)	240, 998
HhaI	GCGC	1 cut(s)	378
Hin1I	GRCGYC	2 cut(s)	251, 990
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	2 cut(s)	1305, 1856
HindII	GTYRAC	2 cut(s)	1305, 1856
HindIII	AAGCTT	1 cut(s)	1932
HinfI	GANTC	9 cut(s)	161, 623, 743, 1216, 1640, 1991, 2026, 2089, 2344
HpaII	CCGG	6 cut(s)	331, 440, 718, 1358, 2153, 2300
HphI	GGTGA	4 cut(s)	62, 1455, 1729, 1886
Hpy166II	GTNNAC	7 cut(s)	742, 850, 1305, 1492, 1494, 1770, 1856
Hpy188I	TCNGA	8 cut(s)	313, 979, 1150, 1200, 1651, 2047, 2067, 2209
Hpy188III	TCNNGA	6 cut(s)	143, 167, 620, 1261, 1388, 1895
Hpy8I	GTNNAC	7 cut(s)	742, 850, 1305, 1492, 1494, 1770, 1856
Hpy99I	CGWCG	4 cut(s)	243, 992, 1839, 1860
HpyAV	CCTTC	3 cut(s)	345, 1874, 2150
HpyCH4III	ACNGT	7 cut(s)	109, 609, 904, 1302, 1592, 1627, 2307
HpyCH4IV	ACGT	2 cut(s)	869, 2316
HpyF3I	CTNAG	6 cut(s)	1199, 1827, 1893, 2148, 2208, 2355
HpySE526I	ACGT	2 cut(s)	869, 2316
Hsp92I	GRCGYC	2 cut(s)	251, 990
HspAI	GCGC	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	2147
Kzo9I	GATC	3 cut(s)	242, 700, 1234
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	5 cut(s)	136, 418, 964, 1089, 1535
Lsp1109I	GCAGC	9 cut(s)	160, 316, 474, 1022, 1087, 1528, 1550, 1774, 2245
LweI	GCATC	7 cut(s)	136, 259, 307, 495, 622, 1417, 2220
MaeI	CTAG	5 cut(s)	246, 620, 1950, 2082, 2094
MaeII	ACGT	2 cut(s)	869, 2316
MaeIII	GTNAC	3 cut(s)	1373, 1838, 1884
MalI	GATC	3 cut(s)	244, 702, 1236
MboI	GATC	3 cut(s)	242, 700, 1234
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	3 cut(s)	423, 717, 1254
MlyI	GAGTC	5 cut(s)	632, 737, 1985, 2035, 2083
MmeI	TCCRAC	3 cut(s)	1316, 1629, 2149
Mph1103I	ATGCAT	2 cut(s)	287, 369
MroXI	GAANNNNTTC	1 cut(s)	1215
MslI	CAYNNNNRTG	5 cut(s)	368, 426, 471, 872, 1259
MspA1I	CMGCKG	2 cut(s)	1541, 1765
MspCI	CTTAAG	2 cut(s)	485, 1553
MspI	CCGG	6 cut(s)	331, 440, 718, 1358, 2153, 2300
MspR9I	CCNGG	3 cut(s)	331, 1023, 1144
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	1023, 1144
NciI	CCSGG	1 cut(s)	331
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	2 cut(s)	9, 178
NdeII	GATC	3 cut(s)	242, 700, 1234
NheI	GCTAGC	1 cut(s)	2081
NlaIV	GGNNCC	5 cut(s)	138, 1251, 2145, 2250, 2274
NmeAIII	GCCGAG	2 cut(s)	1141, 1973
NmuCI	GTSAC	1 cut(s)	1884
NsiI	ATGCAT	2 cut(s)	287, 369
NspI	RCATGY	5 cut(s)	367, 371, 667, 1096, 1796
PaeI	GCATGC	2 cut(s)	367, 1796
PaeR7I	CTCGAG	1 cut(s)	1079
PagI	TCATGA	3 cut(s)	142, 166, 1260
PciSI	GCTCTTC	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	1 cut(s)	1077
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	1215
PfeI	GAWTC	4 cut(s)	161, 1216, 1640, 2344
PflMI	CCANNNNNTGG	1 cut(s)	2317
PinAI	ACCGGT	1 cut(s)	717
PleI	GAGTC	5 cut(s)	631, 737, 1985, 2034, 2083
PpsI	GAGTC	5 cut(s)	631, 737, 1985, 2034, 2083
Psp6I	CCWGG	2 cut(s)	1021, 1142
PspGI	CCWGG	2 cut(s)	1021, 1142
PspN4I	GGNNCC	5 cut(s)	138, 1251, 2145, 2250, 2274
PspPI	GGNCC	4 cut(s)	381, 609, 1831, 2063
PspXI	VCTCGAGB	1 cut(s)	1079
PstI	CTGCAG	1 cut(s)	1700
PvuII	CAGCTG	1 cut(s)	1541
RsaI	GTAC	6 cut(s)	1240, 1356, 1493, 1821, 2077, 2145
RsaNI	GTAC	6 cut(s)	1239, 1355, 1492, 1820, 2076, 2144
RseI	CAYNNNNRTG	5 cut(s)	368, 426, 471, 872, 1259
SalI	GTCGAC	2 cut(s)	1303, 1854
SapI	GCTCTTC	1 cut(s)	705
Sau3AI	GATC	3 cut(s)	242, 700, 1234
Sau96I	GGNCC	4 cut(s)	381, 609, 1831, 2063
ScaI	AGTACT	1 cut(s)	2077
SchI	GAGTC	5 cut(s)	632, 737, 1985, 2035, 2083
ScrFI	CCNGG	3 cut(s)	331, 1023, 1144
SduI	GDGCHC	3 cut(s)	423, 717, 1254
SfaNI	GCATC	7 cut(s)	136, 259, 307, 495, 622, 1417, 2220
SfcI	CTRYAG	2 cut(s)	403, 1696
Sfr274I	CTCGAG	1 cut(s)	1079
SinI	GGWCC	3 cut(s)	609, 1831, 2063
SlaI	CTCGAG	1 cut(s)	1079
SmiMI	CAYNNNNRTG	5 cut(s)	368, 426, 471, 872, 1259
SmlI	CTYRAG	5 cut(s)	444, 485, 636, 1079, 1553
SmoI	CTYRAG	5 cut(s)	444, 485, 636, 1079, 1553
SpeI	ACTAGT	1 cut(s)	1949
SphI	GCATGC	2 cut(s)	367, 1796
SsiI	CCGC	7 cut(s)	482, 893, 1001, 1343, 1765, 2219, 2255
SspI	AATATT	2 cut(s)	1334, 1869
SspMI	CTAG	5 cut(s)	246, 620, 1950, 2082, 2094
StyD4I	CCNGG	3 cut(s)	329, 1021, 1142
StyI	CCWWGG	3 cut(s)	150, 828, 2093
TaaI	ACNGT	7 cut(s)	109, 609, 904, 1302, 1592, 1627, 2307
TaiI	ACGT	2 cut(s)	872, 2319
TaqI	TCGA	7 cut(s)	241, 1080, 1209, 1304, 1643, 1855, 2327
TatI	WGTACW	2 cut(s)	1491, 2075
TauI	GCSGC	2 cut(s)	1004, 2221
TfiI	GAWTC	4 cut(s)	161, 1216, 1640, 2344
TscAI	CASTG	9 cut(s)	114, 226, 537, 553, 781, 1491, 1597, 1632, 2036
TseFI	GTSAC	1 cut(s)	1884
TseI	GCWGC	9 cut(s)	173, 304, 462, 1010, 1075, 1538, 1541, 1762, 2233
Tsp45I	GTSAC	1 cut(s)	1884
TspGWI	ACGGA	2 cut(s)	529, 1823
TspRI	CASTG	9 cut(s)	114, 226, 537, 553, 781, 1491, 1597, 1632, 2036
Van91I	CCANNNNNTGG	1 cut(s)	2317
Vha464I	CTTAAG	2 cut(s)	485, 1553
VpaK11BI	GGWCC	3 cut(s)	609, 1831, 2063
XapI	RAATTY	8 cut(s)	82, 260, 275, 526, 683, 1190, 1315, 1420
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	5 cut(s)	367, 371, 667, 1096, 1796
XhoI	CTCGAG	1 cut(s)	1079
XmaJI	CCTAGG	1 cut(s)	2093
XmiI	GTMKAC	3 cut(s)	741, 1304, 1855
XmnI	GAANNNNTTC	1 cut(s)	1215
XspI	CTAG	5 cut(s)	246, 620, 1950, 2082, 2094
ZrmI	AGTACT	1 cut(s)	2077
Zsp2I	ATGCAT	2 cut(s)	287, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.