MD08G1118300.v1.1

Signal peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012156
Physical Location & Seq
Reverse (-)
10808273 .. 10813422
5150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1118300.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGAAGAACGTTGAGCGGATTGCCAATATCGCATTAGCAGGTTTAACGTTAGCACCACTTGTTGTGAAGGTAGATCCAAACCTAAATGTAGTTTTAACTGCGTGTCTCACAGTTTTTGTGGGTTGCTACCGGTCTGTGAAGCCAACTCCACCTTCAGAGACAATGTCTAATGAACATGCCATGAGATTCCCATTTGTGGGGAGTGCAATGCTGTTATCGCTATTTTTACTTTTTAAGTTCTTATCCAAAGACTTGGTCAATGCTGTATTGACGTGCTATTTCTTTGTTCTTGGGATCATCGCTCTCTCGGCAACACTTTTACCTGCTATTGCACGATATTTGCCAGAGAGTTGGAATAAGGACCCTATCGTCTGGCGTTTTCCTTATTTCCGGTCTTTGGAGATTGAGTTCACAAAATCTCAGATTGTTTCTGCAATCCCTGGAACCTTTTTCTGTGCATGGTATGCTTCAAAGAAGCATTGGCTGGCTAACAATATATTGGGGCTCGCCTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTTAAGACTGGTGCTATCCTTTTGGCTGGACTTTTTGTGTATGATATTTTCTGGGTTTTCTTCACTCCAGTTATGGTCAGTGTTGCCAAATCTTTTGATGCGCCTATAAAGCTGTTGTTCCCCACAGCAGATGCTGCACGTCCATTTTCTATGCTTGGACTTGGTGATATTGTTATCCCTGGTATTTTCGTGGCGTTGGCTTTGCGGTTTGATGTATCTAGGGGGGGGAAGGGCCAGTACTTCAAGAGTGCATTTTTGGGATACACAGTTGGTTTGGTTCTCACAATTGTTGTGATGAACTGGTTTCAGGCAGCGCAGCCTGCACTGTTGTATATTGTACCATCTGTTATTGGATTTTTGGCTGCTCACTGCATATGGAATGGCGACGTCAAACCGCTGTTGGCGTTCGATGAGTCGAAGAGTGCGGTGATATCTGAAGAAGAAAGTGATCCCAAAACCATCAAGAAGGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005791 GO:0005798 GO:0006508 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009555 GO:0009846 GO:0009856 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0030163 GO:0030176 GO:0030660 GO:0030970 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031625 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0033619 GO:0034613 GO:0034976 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042500 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0046907 GO:0046983 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0065003 GO:0070001 GO:0070011 GO:0070727 GO:0071458 GO:0071556 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904211
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A22B

Protein Analysis

342

Amino Acids

37.55

Weight (kDa)

8.8

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 50 - 322 1.3e-89 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03120
fragaria_vesca FvH4_2g36110
malus_domestica MD08G1118300.v1.1 MD15G1097600.v1.1
prunus_persica Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1
pyrus_communis pycom15g08950
rosa_chinensis RchiOBHm_Chr6g0305761
rosa_laevigata RLG00000010860
rosa_multiflora Rmu_sc0001809.1_g000039 Rmu_sc0042960.1_g000001
rosa_roxburghii Rroxscaffold_7G00162370
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455400 Rh6BG445800 Rh6CG469400 Rh6DG456100
rosa_wichuraiana Rw6G039730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AatII GACGTC 1 cut(s) 939
Acc36I ACCTGC 2 cut(s) 29, 331
AccBSI CCGCTC 1 cut(s) 16
AciI CCGC 4 cut(s) 16, 754, 944, 974
AclI AACGTT 2 cut(s) 9, 47
AclWI GGATC 3 cut(s) 68, 302, 992
AcuI CTGAAG 2 cut(s) 138, 1005
AcyI GRCGYC 1 cut(s) 936
AfaI GTAC 2 cut(s) 788, 888
AfiI CCNNNNNNNGG 3 cut(s) 196, 197, 397
AgeI ACCGGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 471, 530, 793
AjiI CACGTC 2 cut(s) 273, 689
AjnI CCWGG 2 cut(s) 439, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 136, 168
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 1 cut(s) 661
AluI AGCT 1 cut(s) 661
Alw26I GTCTC 2 cut(s) 110, 152
AlwI GGATC 3 cut(s) 68, 302, 992
AlwNI CAGNNNCTG 1 cut(s) 683
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 4 cut(s) 683, 860, 865, 911
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AsiGI ACCGGT 1 cut(s) 129
AspLEI GCGC 2 cut(s) 652, 865
AspS9I GGNCC 2 cut(s) 361, 781
AsuHPI GGTGA 2 cut(s) 725, 988
AvaII GGWCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BbvI GCAGC 4 cut(s) 670, 872, 877, 898
BccI CCATC 2 cut(s) 898, 1016
BciT130I CCWGG 2 cut(s) 441, 729
BciVI GTATCC 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 110, 152
BfaI CTAG 1 cut(s) 768
BfuAI ACCTGC 2 cut(s) 29, 331
BfuI GTATCC 1 cut(s) 803
BisI GCNGC 4 cut(s) 684, 861, 866, 912
BlsI GCNGC 4 cut(s) 685, 862, 867, 913
BmcAI AGTACT 1 cut(s) 788
Bme1390I CCNGG 2 cut(s) 441, 729
Bme18I GGWCC 1 cut(s) 361
BmgBI CACGTC 2 cut(s) 273, 689
BmgT120I GGNCC 2 cut(s) 361, 781
BmiI GGNNCC 2 cut(s) 363, 445
BmrFI CCNGG 2 cut(s) 441, 729
BmsI GCATC 2 cut(s) 637, 670
BpmI CTGGAG 1 cut(s) 600
BsaHI GRCGYC 1 cut(s) 936
BsaJI CCNNGG 2 cut(s) 439, 727
BsaWI WCCGGW 2 cut(s) 129, 390
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 197, 397
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 4 cut(s) 562, 617, 784, 854
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 441, 729
BseDI CCNNGG 2 cut(s) 439, 727
BseLI CCNNNNNNNGG 3 cut(s) 196, 197, 397
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 4 cut(s) 562, 617, 784, 854
BseXI GCAGC 4 cut(s) 670, 872, 877, 898
BsgI GTGCAG 2 cut(s) 669, 855
BshFI GGCC 1 cut(s) 783
BshTI ACCGGT 1 cut(s) 129
BsiSI CCGG 2 cut(s) 130, 391
BslI CCNNNNNNNGG 3 cut(s) 196, 197, 397
BsmAI GTCTC 2 cut(s) 110, 152
BsnI GGCC 1 cut(s) 783
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 3 cut(s) 73, 294, 997
BspACI CCGC 4 cut(s) 16, 754, 944, 974
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 363, 445
BspMI ACCTGC 2 cut(s) 29, 331
BspPI GGATC 3 cut(s) 68, 302, 992
BsrBI CCGCTC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 4 cut(s) 562, 617, 784, 854
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 439, 727
BssMI GATC 3 cut(s) 73, 294, 997
BssNI GRCGYC 1 cut(s) 936
Bst2UI CCWGG 2 cut(s) 441, 729
Bst4CI ACNGT 3 cut(s) 112, 817, 876
Bst6I CTCTTC 1 cut(s) 962
BstACI GRCGYC 1 cut(s) 936
BstAPI GCANNNNNTGC 2 cut(s) 464, 683
BstC8I GCNNGC 3 cut(s) 486, 507, 870
BstDEI CTNAG 1 cut(s) 420
BstHHI GCGC 2 cut(s) 652, 865
BstKTI GATC 3 cut(s) 76, 297, 1000
BstMAI GTCTC 2 cut(s) 110, 152
BstMBI GATC 3 cut(s) 73, 294, 997
BstMWI GCNNNNNNNGC 7 cut(s) 29, 217, 308, 464, 658, 683, 869
BstNI CCWGG 2 cut(s) 441, 729
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 2 cut(s) 439, 727
BstV1I GCAGC 4 cut(s) 670, 872, 877, 898
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 2 cut(s) 253, 351
BstYI RGATCY 1 cut(s) 73
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 283
BtrI CACGTC 2 cut(s) 273, 689
BtsI GCAGTG 1 cut(s) 916
BtsIMutI CAGTG 3 cut(s) 634, 872, 916
BveI ACCTGC 2 cut(s) 29, 331
Cac8I GCNNGC 3 cut(s) 486, 507, 870
CaiI CAGNNNCTG 1 cut(s) 683
CfoI GCGC 2 cut(s) 652, 865
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 361, 781
Csp6I GTAC 2 cut(s) 787, 887
CspAI ACCGGT 1 cut(s) 129
CviAII CATG 3 cut(s) 176, 181, 459
CviQI GTAC 2 cut(s) 787, 887
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 75, 296, 999
DpnII GATC 3 cut(s) 73, 294, 997
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 962
EarI CTCTTC 1 cut(s) 962
Eco24I GRGCYC 1 cut(s) 507
Eco32I GATATC 1 cut(s) 981
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 138, 1005
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 439, 727
EcoRV GATATC 1 cut(s) 981
EcoT38I GRGCYC 1 cut(s) 507
FaeI CATG 3 cut(s) 179, 184, 462
FatI CATG 3 cut(s) 175, 180, 458
FauNDI CATATG 1 cut(s) 923
Fnu4HI GCNGC 4 cut(s) 684, 861, 866, 912
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 4 cut(s) 684, 861, 866, 912
FspBI CTAG 1 cut(s) 768
GlaI GCGC 2 cut(s) 651, 864
GluI GCNGC 4 cut(s) 684, 861, 866, 912
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 1 cut(s) 783
HapII CCGG 2 cut(s) 130, 391
HhaI GCGC 2 cut(s) 652, 865
Hin1I GRCGYC 1 cut(s) 936
Hin1II CATG 3 cut(s) 179, 184, 462
Hin6I GCGC 2 cut(s) 650, 863
HinP1I GCGC 2 cut(s) 650, 863
HinfI GANTC 2 cut(s) 186, 962
HpaII CCGG 2 cut(s) 130, 391
HphI GGTGA 2 cut(s) 725, 988
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 3 cut(s) 157, 423, 985
Hpy188III TCNNGA 2 cut(s) 793, 1012
Hpy8I GTNNAC 1 cut(s) 411
Hpy99I CGWCG 1 cut(s) 938
HpyAV CCTTC 5 cut(s) 61, 162, 520, 772, 1009
HpyCH4III ACNGT 3 cut(s) 112, 817, 876
HpyCH4IV ACGT 5 cut(s) 9, 47, 272, 688, 936
HpyCH4V TGCA 8 cut(s) 206, 332, 434, 458, 686, 800, 872, 921
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 217, 308, 464, 658, 683, 869
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 5 cut(s) 9, 47, 272, 688, 936
Hsp92I GRCGYC 1 cut(s) 936
Hsp92II CATG 3 cut(s) 179, 184, 462
HspAI GCGC 2 cut(s) 650, 863
Kzo9I GATC 3 cut(s) 73, 294, 997
Lsp1109I GCAGC 4 cut(s) 670, 872, 877, 898
LweI GCATC 2 cut(s) 637, 670
MaeI CTAG 1 cut(s) 768
MaeII ACGT 5 cut(s) 9, 47, 272, 688, 936
MalI GATC 3 cut(s) 75, 296, 999
MbiI CCGCTC 1 cut(s) 16
MboI GATC 3 cut(s) 73, 294, 997
MboII GAAGA 5 cut(s) 16, 601, 979, 998, 1001
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 2 cut(s) 525, 834
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 1 cut(s) 332
MseI TTAA 4 cut(s) 44, 95, 234, 552
MspA1I CMGCKG 1 cut(s) 946
MspI CCGG 2 cut(s) 130, 391
MspR9I CCNGG 2 cut(s) 441, 729
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 2 cut(s) 441, 729
MwoI GCNNNNNNNGC 7 cut(s) 29, 217, 308, 464, 658, 683, 869
NdeI CATATG 1 cut(s) 923
NdeII GATC 3 cut(s) 73, 294, 997
NlaIII CATG 3 cut(s) 179, 184, 462
NlaIV GGNNCC 2 cut(s) 363, 445
NmeAIII GCCGAG 1 cut(s) 287
NspI RCATGY 1 cut(s) 179
PfeI GAWTC 1 cut(s) 186
PflFI GACNNNGTC 2 cut(s) 163, 254
PinAI ACCGGT 1 cut(s) 129
PkrI GCNGC 4 cut(s) 685, 862, 867, 913
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
PpuMI RGGWCCY 1 cut(s) 361
Psp1406I AACGTT 2 cut(s) 9, 47
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 439, 727
PspGI CCWGG 2 cut(s) 439, 727
PspN4I GGNNCC 2 cut(s) 363, 445
PspPI GGNCC 2 cut(s) 361, 781
PspPPI RGGWCCY 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 2 cut(s) 163, 254
RsaI GTAC 2 cut(s) 788, 888
RsaNI GTAC 2 cut(s) 787, 887
SaqAI TTAA 4 cut(s) 44, 95, 234, 552
SatI GCNGC 4 cut(s) 684, 861, 866, 912
Sau3AI GATC 3 cut(s) 73, 294, 997
Sau96I GGNCC 2 cut(s) 361, 781
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 2 cut(s) 441, 729
SduI GDGCHC 1 cut(s) 507
SfaNI GCATC 2 cut(s) 637, 670
SinI GGWCC 1 cut(s) 361
Sse9I AATT 2 cut(s) 525, 834
SsiI CCGC 4 cut(s) 16, 754, 944, 974
SspMI CTAG 1 cut(s) 768
StyD4I CCNGG 2 cut(s) 439, 727
TaaI ACNGT 3 cut(s) 112, 817, 876
TaiI ACGT 5 cut(s) 12, 50, 275, 691, 939
TaqI TCGA 2 cut(s) 957, 965
TasI AATT 2 cut(s) 525, 834
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 4 cut(s) 44, 95, 234, 552
Tru9I TTAA 4 cut(s) 44, 95, 234, 552
TscAI CASTG 3 cut(s) 634, 879, 923
TseI GCWGC 4 cut(s) 683, 860, 865, 911
TspDTI ATGAA 3 cut(s) 17, 186, 860
TspRI CASTG 3 cut(s) 634, 879, 923
Tth111I GACNNNGTC 2 cut(s) 163, 254
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 1 cut(s) 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XspI CTAG 1 cut(s) 768
ZraI GACGTC 1 cut(s) 937
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.