Rh6BG445800

Signal peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012156
Physical Location & Seq
Reverse (-)
66176730 .. 66181088
4359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG445800.1

Sequence Viewer

Length: 1026 bp
ATGAAGAACGTTGAGCGTTTTGCCAATATCGCCTTAGCAGGTTTAACGTTAGCACCGCTTGTTGTGAGGGTAGATCCAAACCTAAATGTAATTTTCACTGCATGTCTCACAGTTTTTGTGGGCTGCTACCGGTCTGTGAAGCCAACTCCACCCACAGAGACAATGTCTAATGAACATGCTATGCGTTTCCCGTTTGTTGGGAGTGCAATGCTGTTATCACTATTTTTACTCTTTAAGTTCTTATCCAAAGACTTGGTTAATGCTGTCTTGACGTGCTATTTCTTTGTTCTTGGGATCATCGCTCTCTCGGCAACGTTGTTACCTGCTATTGCACGTTATTTGCCAGAGCGTTGGAATAAGGACCTTATCATCTGGCATCTTCCATATTTCCGTTCTGTTGAGATTGAGTTCACAAGGTCTCAGATCTTCGCTGCAATCCCTGGGTTCTTTTTCTGTGCTTGGTACGCTTCAAAGAAGCATTGGCTAGCTAACAACATATTGGGGCTTGCCTTCTGTATTCAGGGAATAGAAATGCTTTCTCTTGGGTCTTTCAAGACAGGAGCCATTCTTTTGGCTGGACTTTTTGTGTATGATATATTCTGGGTTTTCTTCACTCCAGTTATGGTCAGTGTTGCAAAATCTTTCGATGCTCCTATTAAGCTGTTGTTCCCTACAGCAGATATTCAACGTCCATTTTCGATGCTTGGACTTGGTGATATTGTAATCCCTGGTATTTTTGTGGCACTGGCTTTGAGATTTGATGTCTCTAGAGGAAAAAAAGGCCAGTATTTCAATAGTGCATTTTTGGGATACACAGTGGGTTTGGTCCTTACAATTGTTGTAATGAACAGGTTTCAGGCAGCACAGCCTGCACTGTTGTATATTGTACCAGCTGTTATTGGATTTTTGGCTACCCATTGCATCTGGAATGGTGATGTCAAACCGTTATTGGCATTCGATGAGTCAAAGACCACCACAAAATCTGAAGCAGATAATGTTGACAAACCTAACAAGAAGGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005791 GO:0005798 GO:0006508 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009555 GO:0009846 GO:0009856 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0030163 GO:0030176 GO:0030660 GO:0030970 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031625 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0033619 GO:0034613 GO:0034976 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042500 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0046907 GO:0046983 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0065003 GO:0070001 GO:0070011 GO:0070727 GO:0071458 GO:0071556 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904211
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A22B

Protein Analysis

341

Amino Acids

37.97

Weight (kDa)

9.16

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 50 - 322 1.6e-88 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03120
fragaria_vesca FvH4_2g36110
malus_domestica MD08G1118300.v1.1 MD15G1097600.v1.1
prunus_persica Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1
pyrus_communis pycom15g08950
rosa_chinensis RchiOBHm_Chr6g0305761
rosa_laevigata RLG00000010860
rosa_multiflora Rmu_sc0001809.1_g000039 Rmu_sc0042960.1_g000001
rosa_roxburghii Rroxscaffold_7G00162370
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455400 Rh6BG445800 Rh6CG469400 Rh6DG456100
rosa_wichuraiana Rw6G039730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 29, 331
AciI CCGC 1 cut(s) 56
AclI AACGTT 3 cut(s) 9, 47, 314
AclWI GGATC 2 cut(s) 68, 302
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 2 cut(s) 464, 888
AfiI CCNNNNNNNGG 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 129
AgsI TTSAA 4 cut(s) 471, 553, 686, 793
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 2 cut(s) 439, 727
AluBI AGCT 3 cut(s) 488, 661, 893
AluI AGCT 3 cut(s) 488, 661, 893
Alw26I GTCTC 4 cut(s) 110, 152, 423, 769
AlwI GGATC 2 cut(s) 68, 302
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 3 cut(s) 123, 431, 860
AsiGI ACCGGT 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 361, 826
AsuHPI GGTGA 2 cut(s) 725, 944
AsuNHI GCTAGC 1 cut(s) 484
AvaII GGWCC 2 cut(s) 361, 826
BbvI GCAGC 3 cut(s) 110, 418, 872
BciT130I CCWGG 2 cut(s) 441, 729
BciVI GTATCC 1 cut(s) 803
BcoDI GTCTC 4 cut(s) 110, 152, 423, 769
BfaI CTAG 2 cut(s) 485, 768
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 2 cut(s) 29, 331
BfuI GTATCC 1 cut(s) 803
BglII AGATCT 1 cut(s) 423
BisI GCNGC 3 cut(s) 124, 432, 861
BlsI GCNGC 3 cut(s) 125, 433, 862
Bme1390I CCNGG 2 cut(s) 441, 729
Bme18I GGWCC 2 cut(s) 361, 826
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 361, 826
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 441, 729
BmsI GCATC 4 cut(s) 385, 637, 690, 930
BmtI GCTAGC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 439, 440, 727
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 3 cut(s) 617, 750, 784
Bse3DI GCAATG 2 cut(s) 213, 916
BseBI CCWGG 2 cut(s) 441, 729
BseDI CCNNGG 3 cut(s) 439, 440, 727
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 2 cut(s) 213, 916
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 3 cut(s) 617, 750, 784
BseXI GCAGC 3 cut(s) 110, 418, 872
BsgI GTGCAG 1 cut(s) 855
BshFI GGCC 1 cut(s) 783
BshTI ACCGGT 1 cut(s) 129
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 4 cut(s) 110, 152, 423, 769
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 1 cut(s) 783
Bso31I GGTCTC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 73, 294, 423
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 562
BspMI ACCTGC 2 cut(s) 29, 331
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 68, 302
BspTNI GGTCTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 213, 916
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 3 cut(s) 617, 750, 784
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 439, 440, 727
BssMI GATC 3 cut(s) 73, 294, 423
Bst2UI CCWGG 2 cut(s) 441, 729
Bst4CI ACNGT 4 cut(s) 112, 817, 876, 945
BstAPI GCANNNNNTGC 1 cut(s) 869
BstC8I GCNNGC 3 cut(s) 486, 507, 870
BstDEI CTNAG 2 cut(s) 34, 420
BstKTI GATC 3 cut(s) 76, 297, 426
BstMAI GTCTC 4 cut(s) 110, 152, 423, 769
BstMBI GATC 3 cut(s) 73, 294, 423
BstMWI GCNNNNNNNGC 4 cut(s) 29, 308, 464, 869
BstNI CCWGG 2 cut(s) 441, 729
BstNSI RCATGY 2 cut(s) 105, 179
BstSCI CCNGG 2 cut(s) 439, 727
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 3 cut(s) 110, 418, 872
BstX2I RGATCY 2 cut(s) 73, 423
BstXI CCANNNNNNTGG 3 cut(s) 253, 351, 571
BstYI RGATCY 2 cut(s) 73, 423
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 5 cut(s) 96, 634, 743, 822, 872
BveI ACCTGC 2 cut(s) 29, 331
Cac8I GCNNGC 3 cut(s) 486, 507, 870
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 361, 826
Csp6I GTAC 2 cut(s) 463, 887
CspAI ACCGGT 1 cut(s) 129
CviAII CATG 2 cut(s) 102, 176
CviQI GTAC 2 cut(s) 463, 887
DdeI CTNAG 2 cut(s) 34, 420
DpnI GATC 3 cut(s) 75, 296, 425
DpnII GATC 3 cut(s) 73, 294, 423
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 361, 826
Eco57I CTGAAG 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 439, 727
FaeI CATG 2 cut(s) 105, 179
FaiI YATR 9 cut(s) 103, 177, 182, 385, 497, 591, 596, 623, 882
FatI CATG 2 cut(s) 101, 175
Fnu4HI GCNGC 3 cut(s) 124, 432, 861
Fsp4HI GCNGC 3 cut(s) 124, 432, 861
FspBI CTAG 2 cut(s) 485, 768
GluI GCNGC 3 cut(s) 124, 432, 861
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 1 cut(s) 783
HapII CCGG 1 cut(s) 130
Hin1II CATG 2 cut(s) 105, 179
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 1 cut(s) 962
HpaII CCGG 1 cut(s) 130
HphI GGTGA 2 cut(s) 725, 944
Hpy166II GTNNAC 2 cut(s) 411, 1000
Hpy188I TCNGA 2 cut(s) 423, 985
Hpy188III TCNNGA 4 cut(s) 268, 553, 768, 925
Hpy8I GTNNAC 2 cut(s) 411, 1000
HpyAV CCTTC 2 cut(s) 520, 1009
HpyCH4III ACNGT 4 cut(s) 112, 817, 876, 945
HpyCH4IV ACGT 6 cut(s) 9, 47, 272, 314, 334, 688
HpyCH4V TGCA 8 cut(s) 101, 206, 332, 434, 635, 800, 872, 921
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 308, 464, 869
HpyF3I CTNAG 2 cut(s) 34, 420
HpySE526I ACGT 6 cut(s) 9, 47, 272, 314, 334, 688
Hsp92II CATG 2 cut(s) 105, 179
Kzo9I GATC 3 cut(s) 73, 294, 423
LmnI GCTCC 2 cut(s) 560, 655
Lsp1109I GCAGC 3 cut(s) 110, 418, 872
LweI GCATC 4 cut(s) 385, 637, 690, 930
MaeI CTAG 2 cut(s) 485, 768
MaeII ACGT 6 cut(s) 9, 47, 272, 314, 334, 688
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 75, 296, 425
MboI GATC 3 cut(s) 73, 294, 423
MboII GAAGA 4 cut(s) 16, 371, 418, 601
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 2 cut(s) 73, 423
MluCI AATT 2 cut(s) 90, 834
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 2 cut(s) 60, 764
MseI TTAA 4 cut(s) 44, 234, 258, 657
MspA1I CMGCKG 1 cut(s) 893
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 441, 729
MunI CAATTG 1 cut(s) 834
Mva1269I GAATGC 1 cut(s) 953
MvaI CCWGG 2 cut(s) 441, 729
MwoI GCNNNNNNNGC 4 cut(s) 29, 308, 464, 869
NdeII GATC 3 cut(s) 73, 294, 423
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 105, 179
NlaIV GGNNCC 1 cut(s) 562
NmeAIII GCCGAG 1 cut(s) 287
NspI RCATGY 2 cut(s) 105, 179
PasI CCCWGGG 1 cut(s) 440
PctI GAATGC 1 cut(s) 953
PflFI GACNNNGTC 1 cut(s) 163
PinAI ACCGGT 1 cut(s) 129
PkrI GCNGC 3 cut(s) 125, 433, 862
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
PpuMI RGGWCCY 1 cut(s) 361
Psp1406I AACGTT 3 cut(s) 9, 47, 314
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 439, 727
PspGI CCWGG 2 cut(s) 439, 727
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 361, 826
PspPPI RGGWCCY 1 cut(s) 361
PsuI RGATCY 2 cut(s) 73, 423
PsyI GACNNNGTC 1 cut(s) 163
PvuII CAGCTG 1 cut(s) 893
RsaI GTAC 2 cut(s) 464, 888
RsaNI GTAC 2 cut(s) 463, 887
SaqAI TTAA 4 cut(s) 44, 234, 258, 657
SatI GCNGC 3 cut(s) 124, 432, 861
Sau3AI GATC 3 cut(s) 73, 294, 423
Sau96I GGNCC 2 cut(s) 361, 826
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 2 cut(s) 441, 729
SfaNI GCATC 4 cut(s) 385, 637, 690, 930
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 2 cut(s) 361, 826
Sse9I AATT 2 cut(s) 90, 834
SsiI CCGC 1 cut(s) 56
SspMI CTAG 2 cut(s) 485, 768
StyD4I CCNGG 2 cut(s) 439, 727
TaaI ACNGT 4 cut(s) 112, 817, 876, 945
TaiI ACGT 6 cut(s) 12, 50, 275, 317, 337, 691
TaqI TCGA 3 cut(s) 645, 698, 957
TasI AATT 2 cut(s) 90, 834
Tru1I TTAA 4 cut(s) 44, 234, 258, 657
Tru9I TTAA 4 cut(s) 44, 234, 258, 657
TscAI CASTG 5 cut(s) 103, 634, 750, 822, 879
TseI GCWGC 3 cut(s) 123, 431, 860
TspDTI ATGAA 3 cut(s) 17, 186, 860
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 5 cut(s) 103, 634, 750, 822, 879
Tth111I GACNNNGTC 1 cut(s) 163
VpaK11BI GGWCC 2 cut(s) 361, 826
XbaI TCTAGA 1 cut(s) 767
XceI RCATGY 2 cut(s) 105, 179
XspI CTAG 2 cut(s) 485, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.