RLG00000010860

Signal peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012156
Physical Location & Seq
Reverse (-)
4843220 .. 4847584
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010860

Sequence Viewer

Length: 1365 bp
ATGGCAAAACATGATTGGAAGCTGTGCATCGACCAACGTGGCTTGAGTAAAACGATCGAAACCCGTCATCAACTTTGTAATCGGCTCAACGTTTCAAAATTGAAGATACAAACAGCGCCCAACTCTGCAAATTCATCAAATCAAAATCCAAAAATTCCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCGATCCGTACGGAACGAAACCCGGTTGAAATTTCAATTGCATCGCGGCCCACTGGTTCGGGGTTTCGTTGCGGAGGGGAACACATTCAGTTGGATTCAAATTCGATCTGAATCTTTGTTCTTTCCGAGTGGTATAGTGGAAACGATGAAGAACGTTGAGCGTTTTGCCAATATCGCCTTAGCAGGTTTAACGTTAGCACCGCTTGTTGTGAGGGTAGATCCAAACCTAAATGTAATTTTCACTGCATGTCTCACAGTTTTTGTGGGCTGCTACCGTTCTGTGAAGCCAACTCCACCCACAGAGACAATGTCTAATGAACATGCTATGCGTTTCCCGTTTGTTGGGAGTGCAATGCTGTTATCACTATTTTTACTCTTTAAGTTCTTATCCAAAGACTTGGTTAATGCTGTCTTGACGTGCTATTTCTTTGTTCTTGGGATCATCGCTCTCTCGGCAACGTTGTTACCTGCTATTGCACGCTATTTGCCAGAGCGTTGGAATAAGGACCTTATCATCCGGCATCTTCCATATTTCCGTTCTGTTGAGATTGAGTTCACAAGGTCTCAGATCTTCGCTGCAATCCCTGGGTTCTTTTTCTGTGCTTGGTACGCTTCAAAGAAGCATTGGCTAGCTAACAACATATTGGGGCTTGCCTTCTGTATTCAGGGAATAGAAATGCTTTCTCTTGGGTCTTTCAAGACGGGAGCCATTCTTTTGGCTGGACTTTTTGTGTATGATATATTCTGGGTTTTCTTCACTCCAGTTATGGTCAGTGTGGCAAAATCTTTCGATGCTCCTATTAAGCTGTTGTTCCCTACAGCAGATATTCAACGTCCATTTTCGATGCTTGGACTTGGTGATATTGTAATCCCTGGTATTTTTGTGGCACTGGCTTTGAGATTTGATGTCTCTAGAGGAAAAAAGGGCCAGTATTTCAAGAGTGCATTTTTGGGATACACAGTGGGTTTGGTCCTTACAATTGTTGTAATGAACTGGTTTCAGGCAGCACAGCCTGCACTGTTGTATATTGTACCAGCTGTTATTGGATTTTTGGCTACCCATTGCATCTGGAATGGTGATGTCAAACCGTTATTGGCATTCGATGAGTCAAAGACCACCGCAAAATCTGAAGTGGATAATGTTGACAAACCTAACAAGAAGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005791 GO:0005798 GO:0006508 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009555 GO:0009846 GO:0009856 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0030163 GO:0030176 GO:0030660 GO:0030970 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031625 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0033619 GO:0034613 GO:0034976 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042500 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0046907 GO:0046983 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0065003 GO:0070001 GO:0070011 GO:0070727 GO:0071458 GO:0071556 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904211
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A22B

Protein Analysis

455

Amino Acids

50.75

Weight (kDa)

9.63

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 163 - 435 2.4e-88 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03120
fragaria_vesca FvH4_2g36110
malus_domestica MD08G1118300.v1.1 MD15G1097600.v1.1
prunus_persica Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1
pyrus_communis pycom15g08950
rosa_chinensis RchiOBHm_Chr6g0305761
rosa_laevigata RLG00000010860
rosa_multiflora Rmu_sc0001809.1_g000039 Rmu_sc0042960.1_g000001
rosa_roxburghii Rroxscaffold_7G00162370
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455400 Rh6BG445800 Rh6CG469400 Rh6DG456100
rosa_wichuraiana Rw6G039730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 368, 670
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 240, 266, 395, 1314
AclI AACGTT 4 cut(s) 90, 348, 386, 653
AclWI GGATC 3 cut(s) 192, 407, 641
AcsI RAATTY 4 cut(s) 130, 153, 224, 294
AcuI CTGAAG 1 cut(s) 1344
AfaI GTAC 3 cut(s) 204, 803, 1227
AfiI CCNNNNNNNGG 1 cut(s) 536
AgsI TTSAA 9 cut(s) 96, 103, 223, 230, 293, 810, 892, 1025, 1132
AjiI CACGTC 1 cut(s) 612
AjnI CCWGG 2 cut(s) 778, 1066
AluBI AGCT 4 cut(s) 22, 827, 1000, 1232
AluI AGCT 4 cut(s) 22, 827, 1000, 1232
Alw26I GTCTC 4 cut(s) 449, 491, 762, 1108
AlwI GGATC 3 cut(s) 192, 407, 641
AoxI GGCC 2 cut(s) 241, 1120
ApeKI GCWGC 3 cut(s) 462, 770, 1199
ApoI RAATTY 4 cut(s) 130, 153, 224, 294
Asp700I GAANNNNTTC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 4 cut(s) 242, 700, 1120, 1165
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 2 cut(s) 1064, 1283
AsuNHI GCTAGC 1 cut(s) 823
AvaII GGWCC 2 cut(s) 700, 1165
BbvI GCAGC 3 cut(s) 449, 757, 1211
BciT130I CCWGG 2 cut(s) 780, 1068
BciVI GTATCC 1 cut(s) 1142
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 4 cut(s) 449, 491, 762, 1108
BfaI CTAG 2 cut(s) 824, 1107
BfmI CTRYAG 1 cut(s) 1011
BfoI RGCGCY 1 cut(s) 119
BfuAI ACCTGC 2 cut(s) 368, 670
BfuI GTATCC 1 cut(s) 1142
BglII AGATCT 1 cut(s) 762
BisI GCNGC 4 cut(s) 241, 463, 771, 1200
BlsI GCNGC 4 cut(s) 242, 464, 772, 1201
Bme1390I CCNGG 3 cut(s) 217, 780, 1068
Bme18I GGWCC 2 cut(s) 700, 1165
BmgBI CACGTC 1 cut(s) 612
BmgT120I GGNCC 4 cut(s) 242, 700, 1120, 1165
BmiI GGNNCC 1 cut(s) 901
BmrFI CCNGG 3 cut(s) 217, 780, 1068
BmsI GCATC 6 cut(s) 36, 244, 724, 976, 1029, 1269
BmtI GCTAGC 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 939
Bpu10I CCTNAGC 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 762
BsaJI CCNNGG 3 cut(s) 778, 779, 1066
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse1I ACTGG 5 cut(s) 252, 956, 1089, 1123, 1193
Bse3DI GCAATG 2 cut(s) 552, 1255
Bse8I GATNNNNATC 1 cut(s) 304
BseBI CCWGG 2 cut(s) 780, 1068
BseDI CCNNGG 3 cut(s) 778, 779, 1066
BseGI GGATG 1 cut(s) 708
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 2 cut(s) 552, 1255
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 5 cut(s) 252, 956, 1089, 1123, 1193
BseXI GCAGC 3 cut(s) 449, 757, 1211
BsgI GTGCAG 1 cut(s) 1194
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 243, 1122
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 217, 712
BsiWI CGTACG 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 4 cut(s) 449, 491, 762, 1108
BsmI GAATGC 1 cut(s) 1292
BsnI GGCC 2 cut(s) 243, 1122
Bso31I GGTCTC 1 cut(s) 762
Bsp143I GATC 6 cut(s) 54, 197, 299, 412, 633, 762
BspACI CCGC 4 cut(s) 240, 266, 395, 1314
BspANI GGCC 2 cut(s) 243, 1122
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 901
BspMI ACCTGC 2 cut(s) 368, 670
BspOI GCTAGC 1 cut(s) 827
BspPI GGATC 3 cut(s) 192, 407, 641
BspTNI GGTCTC 1 cut(s) 762
BsrDI GCAATG 2 cut(s) 552, 1255
BsrI ACTGG 5 cut(s) 252, 956, 1089, 1123, 1193
BssECI CCNNGG 3 cut(s) 778, 779, 1066
BssMI GATC 6 cut(s) 54, 197, 299, 412, 633, 762
Bst2UI CCWGG 2 cut(s) 780, 1068
Bst4CI ACNGT 5 cut(s) 451, 470, 1156, 1215, 1284
BstAPI GCANNNNNTGC 1 cut(s) 1208
BstC8I GCNNGC 4 cut(s) 673, 825, 846, 1209
BstDEI CTNAG 2 cut(s) 373, 759
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 6 cut(s) 57, 200, 302, 415, 636, 765
BstMAI GTCTC 4 cut(s) 449, 491, 762, 1108
BstMBI GATC 6 cut(s) 54, 197, 299, 412, 633, 762
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 368, 647, 803, 1208
BstNI CCWGG 2 cut(s) 780, 1068
BstNSI RCATGY 2 cut(s) 444, 518
BstSCI CCNGG 3 cut(s) 215, 778, 1066
BstSFI CTRYAG 1 cut(s) 1011
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 449, 757, 1211
BstX2I RGATCY 2 cut(s) 412, 762
BstXI CCANNNNNNTGG 3 cut(s) 592, 690, 910
BstYI RGATCY 2 cut(s) 412, 762
BsuI GTATCC 1 cut(s) 1142
BsuRI GGCC 2 cut(s) 243, 1122
BtgZI GCGATG 2 cut(s) 221, 622
BtrI CACGTC 1 cut(s) 612
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 6 cut(s) 245, 435, 973, 1082, 1161, 1211
BveI ACCTGC 2 cut(s) 368, 670
Cac8I GCNNGC 4 cut(s) 673, 825, 846, 1209
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 4 cut(s) 242, 700, 1120, 1165
Csp6I GTAC 3 cut(s) 203, 802, 1226
CviAII CATG 3 cut(s) 11, 441, 515
CviQI GTAC 3 cut(s) 203, 802, 1226
DdeI CTNAG 2 cut(s) 373, 759
DpnI GATC 6 cut(s) 56, 199, 301, 414, 635, 764
DpnII GATC 6 cut(s) 54, 197, 299, 412, 633, 762
Eco31I GGTCTC 1 cut(s) 762
Eco47I GGWCC 2 cut(s) 700, 1165
Eco57I CTGAAG 1 cut(s) 1344
EcoO109I RGGNCCY 1 cut(s) 700
EcoRII CCWGG 2 cut(s) 778, 1066
FaeI CATG 3 cut(s) 14, 444, 518
FatI CATG 3 cut(s) 10, 440, 514
Fnu4HI GCNGC 4 cut(s) 241, 463, 771, 1200
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 4 cut(s) 241, 463, 771, 1200
FspBI CTAG 2 cut(s) 824, 1107
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 241, 463, 771, 1200
GsuI CTGGAG 1 cut(s) 939
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 243, 1122
HapII CCGG 2 cut(s) 217, 712
HhaI GCGC 1 cut(s) 118
Hin1II CATG 3 cut(s) 14, 444, 518
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HinfI GANTC 3 cut(s) 289, 305, 1301
HpaII CCGG 2 cut(s) 217, 712
HphI GGTGA 2 cut(s) 1064, 1283
Hpy166II GTNNAC 2 cut(s) 750, 1339
Hpy188I TCNGA 5 cut(s) 197, 304, 321, 762, 1324
Hpy188III TCNNGA 5 cut(s) 607, 892, 1107, 1132, 1264
Hpy8I GTNNAC 2 cut(s) 750, 1339
HpyAV CCTTC 2 cut(s) 859, 1348
HpyCH4III ACNGT 5 cut(s) 451, 470, 1156, 1215, 1284
HpyCH4IV ACGT 7 cut(s) 37, 90, 348, 386, 611, 653, 1027
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 647, 803, 1208
HpyF3I CTNAG 2 cut(s) 373, 759
HpySE526I ACGT 7 cut(s) 37, 90, 348, 386, 611, 653, 1027
Hsp92II CATG 3 cut(s) 14, 444, 518
HspAI GCGC 1 cut(s) 116
Kzo9I GATC 6 cut(s) 54, 197, 299, 412, 633, 762
LmnI GCTCC 2 cut(s) 899, 994
Lsp1109I GCAGC 3 cut(s) 449, 757, 1211
LweI GCATC 6 cut(s) 36, 244, 724, 976, 1029, 1269
MaeI CTAG 2 cut(s) 824, 1107
MaeII ACGT 7 cut(s) 37, 90, 348, 386, 611, 653, 1027
MaeIII GTNAC 1 cut(s) 657
MalI GATC 6 cut(s) 56, 199, 301, 414, 635, 764
MboI GATC 6 cut(s) 54, 197, 299, 412, 633, 762
MboII GAAGA 5 cut(s) 115, 355, 710, 757, 940
MfeI CAATTG 2 cut(s) 230, 1173
MflI RGATCY 2 cut(s) 412, 762
MluCI AATT 8 cut(s) 98, 130, 153, 224, 230, 294, 429, 1173
MlyI GAGTC 1 cut(s) 1310
MmeI TCCRAC 2 cut(s) 266, 671
MnlI CCTC 3 cut(s) 262, 399, 1103
MroXI GAANNNNTTC 1 cut(s) 278
MseI TTAA 4 cut(s) 383, 573, 597, 996
MspA1I CMGCKG 1 cut(s) 1232
MspI CCGG 2 cut(s) 217, 712
MspR9I CCNGG 3 cut(s) 217, 780, 1068
MunI CAATTG 2 cut(s) 230, 1173
Mva1269I GAATGC 1 cut(s) 1292
MvaI CCWGG 2 cut(s) 780, 1068
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 4 cut(s) 368, 647, 803, 1208
NciI CCSGG 1 cut(s) 217
NdeII GATC 6 cut(s) 54, 197, 299, 412, 633, 762
NheI GCTAGC 1 cut(s) 823
NlaIII CATG 3 cut(s) 14, 444, 518
NlaIV GGNNCC 1 cut(s) 901
NmeAIII GCCGAG 1 cut(s) 626
NspI RCATGY 2 cut(s) 444, 518
PasI CCCWGGG 1 cut(s) 779
PctI GAATGC 1 cut(s) 1292
PdmI GAANNNNTTC 1 cut(s) 278
PfeI GAWTC 2 cut(s) 289, 305
Pfl23II CGTACG 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 502
PkrI GCNGC 4 cut(s) 242, 464, 772, 1201
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 1 cut(s) 1309
PpsI GAGTC 1 cut(s) 1309
PpuMI RGGWCCY 1 cut(s) 700
Psp1406I AACGTT 4 cut(s) 90, 348, 386, 653
Psp5II RGGWCCY 1 cut(s) 700
Psp6I CCWGG 2 cut(s) 778, 1066
PspGI CCWGG 2 cut(s) 778, 1066
PspLI CGTACG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 901
PspPI GGNCC 4 cut(s) 242, 700, 1120, 1165
PspPPI RGGWCCY 1 cut(s) 700
PsuI RGATCY 2 cut(s) 412, 762
PsyI GACNNNGTC 1 cut(s) 502
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 1232
RsaI GTAC 3 cut(s) 204, 803, 1227
RsaNI GTAC 3 cut(s) 203, 802, 1226
SaqAI TTAA 4 cut(s) 383, 573, 597, 996
SatI GCNGC 4 cut(s) 241, 463, 771, 1200
Sau3AI GATC 6 cut(s) 54, 197, 299, 412, 633, 762
Sau96I GGNCC 4 cut(s) 242, 700, 1120, 1165
SchI GAGTC 1 cut(s) 1310
ScrFI CCNGG 3 cut(s) 217, 780, 1068
SfaNI GCATC 6 cut(s) 36, 244, 724, 976, 1029, 1269
SfcI CTRYAG 1 cut(s) 1011
SinI GGWCC 2 cut(s) 700, 1165
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 8 cut(s) 98, 130, 153, 224, 230, 294, 429, 1173
SsiI CCGC 4 cut(s) 240, 266, 395, 1314
SspMI CTAG 2 cut(s) 824, 1107
StyD4I CCNGG 3 cut(s) 215, 778, 1066
TaaI ACNGT 5 cut(s) 451, 470, 1156, 1215, 1284
TaiI ACGT 7 cut(s) 40, 93, 351, 389, 614, 656, 1030
TaqI TCGA 6 cut(s) 30, 57, 298, 984, 1037, 1296
TasI AATT 8 cut(s) 98, 130, 153, 224, 230, 294, 429, 1173
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 2 cut(s) 289, 305
Tru1I TTAA 4 cut(s) 383, 573, 597, 996
Tru9I TTAA 4 cut(s) 383, 573, 597, 996
TscAI CASTG 6 cut(s) 252, 442, 973, 1089, 1161, 1218
TseI GCWGC 3 cut(s) 462, 770, 1199
TspDTI ATGAA 4 cut(s) 123, 356, 525, 1199
TspGWI ACGGA 3 cut(s) 190, 220, 719
TspRI CASTG 6 cut(s) 252, 442, 973, 1089, 1161, 1218
Tth111I GACNNNGTC 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 700, 1165
XapI RAATTY 4 cut(s) 130, 153, 224, 294
XbaI TCTAGA 1 cut(s) 1106
XceI RCATGY 2 cut(s) 444, 518
XmnI GAANNNNTTC 1 cut(s) 278
XspI CTAG 2 cut(s) 824, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.