Rh6AG455400

Signal peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012156
Physical Location & Seq
Forward (+)
64014449 .. 64019268
4820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG455400.1

Sequence Viewer

Length: 741 bp
ATGAAGAACGTTGAGCGTTTTGCCAATATCGCCTTAGCAGGTTTAACGTTAGCACCGCTTATTGTGAGGGTAGATCCAAACCTAAATGTAATTTTCACTGCATGTCTCACAGTTTTTGTGGGCTGCTACCGGTCTGTGAAGCCAACTCCACCCACAGAGACAATGTCTAATGAACATGCTATGCGTTTCCCGTTTGTTGGGAGTGCAATGCTGTTATCACTATTTTTACTCTTTAAGTTCTTATCCAAAGACTTGGTTAATGCTGTCTTGACGTGCTATTTCTTTGTTCTTGGGATCATCGCTCTCTCGGCAACGTTGTTACCTGCTATTGCACGTTATTTGCCAGAGCGTTGGAATAAGGACCTCATCATCTGGCATCTTCCATATTTCCGTTCTGTTGAGATTGAGTTCACAAGGTCTCAGATCTTCGCTGCAATCCCTGGGTTCTTTTTCTGTGCTTGGTACGCTTCAAAGAAGCATTGGCTAGCTAACAACATATTGGGGCTTGCCTTCTGTATTCAGGGAATAGAAATGCTTTCTCTTGGGTCTTTCAAGACAGGAGCCATTCTTTTGGCTGGACTTTTTGTGTATGATATATTCTGGGTTTTCTTCACTCCAGTTATGGTCAGTGTTGCAAAATCTTTTGATGCTCCTATTAAGCTGTTGTTCCCTACAGCAGATATTCAACGTCCATTTTCGATGCTTGGACTTGGTGATATTGTAATCCCTGGTGAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005791 GO:0005798 GO:0006508 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009555 GO:0009846 GO:0009856 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019538 GO:0019899 GO:0022414 GO:0022607 GO:0030163 GO:0030176 GO:0030660 GO:0030970 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031625 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0033619 GO:0034613 GO:0034976 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042500 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0046907 GO:0046983 GO:0048229 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0065003 GO:0070001 GO:0070011 GO:0070727 GO:0071458 GO:0071556 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:0098852 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904211
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_A22B

Protein Analysis

246

Amino Acids

27.54

Weight (kDa)

8.83

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_A22B PF04258 50 - 244 2.6e-57 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03120
fragaria_vesca FvH4_2g36110
malus_domestica MD08G1118300.v1.1 MD15G1097600.v1.1
prunus_persica Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1 Prupe.1G452500_v2.0.a1
pyrus_communis pycom15g08950
rosa_chinensis RchiOBHm_Chr6g0305761
rosa_laevigata RLG00000010860
rosa_multiflora Rmu_sc0001809.1_g000039 Rmu_sc0042960.1_g000001
rosa_roxburghii Rroxscaffold_7G00162370
rosa_rugosa Rorug06G0344000
rosa_samantha Rh6AG455400 Rh6BG445800 Rh6CG469400 Rh6DG456100
rosa_wichuraiana Rw6G039730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 29, 331
AciI CCGC 1 cut(s) 56
AclI AACGTT 3 cut(s) 9, 47, 314
AclWI GGATC 2 cut(s) 68, 302
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 471, 553, 686
AjiI CACGTC 1 cut(s) 273
AjnI CCWGG 2 cut(s) 439, 727
AluBI AGCT 2 cut(s) 488, 661
AluI AGCT 2 cut(s) 488, 661
Alw26I GTCTC 4 cut(s) 110, 152, 423, 728
AlwI GGATC 2 cut(s) 68, 302
ApeKI GCWGC 2 cut(s) 123, 431
AsiGI ACCGGT 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 725
AsuNHI GCTAGC 1 cut(s) 484
AvaII GGWCC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 110, 418
BciT130I CCWGG 2 cut(s) 441, 729
BcoDI GTCTC 4 cut(s) 110, 152, 423, 728
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 2 cut(s) 29, 331
BglII AGATCT 1 cut(s) 423
BisI GCNGC 2 cut(s) 124, 432
BlsI GCNGC 2 cut(s) 125, 433
Bme1390I CCNGG 2 cut(s) 441, 729
Bme18I GGWCC 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 2 cut(s) 441, 729
BmsI GCATC 3 cut(s) 385, 637, 690
BmtI GCTAGC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 600
Bpu10I CCTNAGC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 439, 440, 727
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 617
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 441, 729
BseDI CCNNGG 3 cut(s) 439, 440, 727
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 617
BseXI GCAGC 2 cut(s) 110, 418
BshTI ACCGGT 1 cut(s) 129
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 4 cut(s) 110, 152, 423, 728
Bso31I GGTCTC 1 cut(s) 423
Bsp143I GATC 3 cut(s) 73, 294, 423
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 562
BspMI ACCTGC 2 cut(s) 29, 331
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 2 cut(s) 68, 302
BspTNI GGTCTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 1 cut(s) 617
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 439, 440, 727
BssMI GATC 3 cut(s) 73, 294, 423
Bst2UI CCWGG 2 cut(s) 441, 729
Bst4CI ACNGT 1 cut(s) 112
BstC8I GCNNGC 2 cut(s) 486, 507
BstDEI CTNAG 2 cut(s) 34, 420
BstKTI GATC 3 cut(s) 76, 297, 426
BstMAI GTCTC 4 cut(s) 110, 152, 423, 728
BstMBI GATC 3 cut(s) 73, 294, 423
BstMWI GCNNNNNNNGC 3 cut(s) 29, 308, 464
BstNI CCWGG 2 cut(s) 441, 729
BstNSI RCATGY 2 cut(s) 105, 179
BstSCI CCNGG 2 cut(s) 439, 727
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 2 cut(s) 110, 418
BstX2I RGATCY 2 cut(s) 73, 423
BstXI CCANNNNNNTGG 3 cut(s) 253, 351, 571
BstYI RGATCY 2 cut(s) 73, 423
BtgZI GCGATG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 634
BveI ACCTGC 2 cut(s) 29, 331
Cac8I GCNNGC 2 cut(s) 486, 507
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 463
CspAI ACCGGT 1 cut(s) 129
CviAII CATG 2 cut(s) 102, 176
CviJI RGCY 8 cut(s) 123, 142, 484, 488, 505, 563, 575, 661
CviKI_1 RGCY 8 cut(s) 123, 142, 484, 488, 505, 563, 575, 661
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 34, 420
DpnI GATC 3 cut(s) 75, 296, 425
DpnII GATC 3 cut(s) 73, 294, 423
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 361
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 439, 727
FaeI CATG 2 cut(s) 105, 179
FaiI YATR 9 cut(s) 103, 177, 182, 385, 497, 591, 596, 623, 739
FatI CATG 2 cut(s) 101, 175
Fnu4HI GCNGC 2 cut(s) 124, 432
Fsp4HI GCNGC 2 cut(s) 124, 432
FspBI CTAG 1 cut(s) 485
GluI GCNGC 2 cut(s) 124, 432
GsuI CTGGAG 1 cut(s) 600
HapII CCGG 1 cut(s) 130
Hin1II CATG 2 cut(s) 105, 179
HpaII CCGG 1 cut(s) 130
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 2 cut(s) 268, 553
Hpy8I GTNNAC 1 cut(s) 411
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 6 cut(s) 9, 47, 272, 314, 334, 688
HpyCH4V TGCA 5 cut(s) 101, 206, 332, 434, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 308, 464
HpyF3I CTNAG 2 cut(s) 34, 420
HpySE526I ACGT 6 cut(s) 9, 47, 272, 314, 334, 688
Hsp92II CATG 2 cut(s) 105, 179
Kzo9I GATC 3 cut(s) 73, 294, 423
LmnI GCTCC 2 cut(s) 560, 655
Lsp1109I GCAGC 2 cut(s) 110, 418
LweI GCATC 3 cut(s) 385, 637, 690
MaeI CTAG 1 cut(s) 485
MaeII ACGT 6 cut(s) 9, 47, 272, 314, 334, 688
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 75, 296, 425
MboI GATC 3 cut(s) 73, 294, 423
MboII GAAGA 4 cut(s) 16, 371, 418, 601
MflI RGATCY 2 cut(s) 73, 423
MluCI AATT 1 cut(s) 90
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 2 cut(s) 60, 374
MseI TTAA 4 cut(s) 44, 234, 258, 657
MspI CCGG 1 cut(s) 130
MspR9I CCNGG 2 cut(s) 441, 729
MvaI CCWGG 2 cut(s) 441, 729
MwoI GCNNNNNNNGC 3 cut(s) 29, 308, 464
NdeII GATC 3 cut(s) 73, 294, 423
NheI GCTAGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 105, 179
NlaIV GGNNCC 1 cut(s) 562
NmeAIII GCCGAG 1 cut(s) 287
NspI RCATGY 2 cut(s) 105, 179
PasI CCCWGGG 1 cut(s) 440
PflFI GACNNNGTC 1 cut(s) 163
PinAI ACCGGT 1 cut(s) 129
PkrI GCNGC 2 cut(s) 125, 433
PpuMI RGGWCCY 1 cut(s) 361
Psp1406I AACGTT 3 cut(s) 9, 47, 314
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 439, 727
PspGI CCWGG 2 cut(s) 439, 727
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
PsuI RGATCY 2 cut(s) 73, 423
PsyI GACNNNGTC 1 cut(s) 163
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 4 cut(s) 44, 234, 258, 657
SatI GCNGC 2 cut(s) 124, 432
Sau3AI GATC 3 cut(s) 73, 294, 423
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 2 cut(s) 441, 729
SfaNI GCATC 3 cut(s) 385, 637, 690
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 361
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 2 cut(s) 439, 727
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 6 cut(s) 12, 50, 275, 317, 337, 691
TaqI TCGA 1 cut(s) 698
TasI AATT 1 cut(s) 90
Tru1I TTAA 4 cut(s) 44, 234, 258, 657
Tru9I TTAA 4 cut(s) 44, 234, 258, 657
TscAI CASTG 2 cut(s) 103, 634
TseI GCWGC 2 cut(s) 123, 431
TspDTI ATGAA 2 cut(s) 17, 186
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 103, 634
Tth111I GACNNNGTC 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 361
XceI RCATGY 2 cut(s) 105, 179
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.