Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007645

Physical Location & Seq

Genomic Coordinates Reverse (-)

18462617 .. 18463779

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1160400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGCAAGAAGGCTGTGGCGGAGGACATGCAAAGGTGGAGAGCTGCGGCGGCCGCTCGGTTGTGGTGGGGGTGAAGCTGGACTCGAAGAGCAGAGAGCTGCTGACGTGGGCTCTGGTCAAGGTGGCTCAGCCTGGTGACCGTGTGATTGCCCTCCATGTGCTCGATAAAAATGAAATTGTTGATCGAGATGGGAAGTCGTCGCTTCTCTCCCTTGTCAAAGCCTTTGACTCTGTTCTTGCAGTCTATGATGGTTTCTGCAACTTGAAGCAGGTGGATCTCAAGCTCAAAATCTGCGGAGGAACATCAATCAAGAAAATATTAGTTCGGGAAGCGAATTCGTATACTGCAAGTAAGGTTATAGTTGGAACTGCTCAGAACCACCATAAAATCCGGTCATCGACCGCGCCGTGGCCAAATACTGTGCTAAGAAACTGTCTAAGGATTGTGGGGTTCTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

155

Amino Acids

16.63

Weight (kDa)

9.54

Isoelectric Point (pI)

24.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	19 - 129	1.7e-06	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007645)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77280 AT1G77280
fragaria_vesca	FvH4_2g27940 FvH4_2g27940 FvH4_2g27940 FvH4_2g27940
malus_domestica	MD08G1160300.v1.1 MD08G1160400.v1.1 MD15G1133500.v1.1
prunus_persica	Prupe.1G489100_v2.0.a1 Prupe.1G489100_v2.0.a1
pyrus_communis	pycom08g13520 pycom15g12030
rosa_chinensis	RchiOBHm_Chr6g0296761
rosa_laevigata	RLG00000011661
rosa_multiflora	Rmu_ssc0000192.1_g000010
rosa_roxburghii	Rroxscaffold_7G00171190
rosa_rugosa	Rorug06G0265700 Rorug06G0265800
rosa_samantha	Rh6AG376800 Rh6BG385100 Rh6CG390400 Rh6DG377500
rosa_wichuraiana	Rw6G032940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccBSI	CCGCTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	344
AccII	CGCG	1 cut(s)	407
AciI	CCGC	6 cut(s)	21, 48, 51, 55, 297, 405
AclWI	GGATC	1 cut(s)	285
AcoI	YGGCCR	2 cut(s)	52, 413
AcsI	RAATTY	1 cut(s)	337
AfiI	CCNNNNNNNGG	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	268
AjiI	CACGTC	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	4 cut(s)	45, 79, 100, 286
AluI	AGCT	4 cut(s)	45, 79, 100, 286
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	2 cut(s)	52, 413
ApeKI	GCWGC	2 cut(s)	45, 100
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	85, 149
BalI	TGGCCA	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	32, 87
BccI	CCATC	2 cut(s)	185, 245
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	5 cut(s)	46, 49, 52, 55, 101
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	5 cut(s)	47, 50, 53, 56, 102
Bme1390I	CCNGG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	143, 389
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	32, 87
Bsh1236I	CGCG	1 cut(s)	407
Bsh1285I	CGRYCG	2 cut(s)	55, 405
BshFI	GGCC	2 cut(s)	54, 415
BsiEI	CGRYCG	2 cut(s)	55, 405
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	411
BsnI	GGCC	2 cut(s)	54, 415
Bsp1286I	GDGCHC	2 cut(s)	115, 165
Bsp143I	GATC	2 cut(s)	184, 277
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	6 cut(s)	21, 48, 51, 55, 297, 405
BspANI	GGCC	2 cut(s)	54, 415
BspCNI	CTCAG	2 cut(s)	142, 388
BspFNI	CGCG	1 cut(s)	407
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	2 cut(s)	184, 277
BssNAI	GTATAC	1 cut(s)	345
Bst1107I	GTATAC	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	143, 424, 437
Bst6I	CTCTTC	1 cut(s)	83
BstDEI	CTNAG	4 cut(s)	129, 375, 428, 440
BstDSI	CCRYGG	1 cut(s)	410
BstEII	GGTNACC	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	187, 280
BstMBI	GATC	2 cut(s)	184, 277
BstMCI	CGRYCG	2 cut(s)	55, 405
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 54
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	2 cut(s)	32, 87
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
BstZ17I	GTATAC	1 cut(s)	345
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	54, 415
BtgI	CCRYGG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	108
BveI	ACCTGC	1 cut(s)	262
CciNI	GCGGCCGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	409
CviAII	CATG	2 cut(s)	29, 158
DdeI	CTNAG	4 cut(s)	129, 375, 428, 440
DpnI	GATC	2 cut(s)	186, 279
DpnII	GATC	2 cut(s)	184, 277
EaeI	YGGCCR	2 cut(s)	52, 413
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	133
EcoT38I	GRGCYC	1 cut(s)	115
FaeI	CATG	2 cut(s)	32, 161
FaiI	YATR	6 cut(s)	30, 159, 249, 345, 362, 387
FatI	CATG	2 cut(s)	28, 157
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	5 cut(s)	46, 49, 52, 55, 101
FriOI	GRGCYC	1 cut(s)	115
Fsp4HI	GCNGC	5 cut(s)	46, 49, 52, 55, 101
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	5 cut(s)	46, 49, 52, 55, 101
HaeIII	GGCC	2 cut(s)	54, 415
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	32, 161
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	2 cut(s)	83, 230
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	2 cut(s)	85, 149
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	3 cut(s)	188, 313, 329
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	3 cut(s)	143, 424, 437
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	5 cut(s)	7, 32, 242, 261, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 54
HpyF3I	CTNAG	4 cut(s)	129, 375, 428, 440
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	32, 161
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	184, 277
LguI	GCTCTTC	1 cut(s)	83
LpnPI	CCDG	6 cut(s)	65, 101, 120, 147, 257, 407
Lsp1109I	GCAGC	2 cut(s)	32, 87
MaeII	ACGT	1 cut(s)	107
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	186, 279
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	2 cut(s)	184, 277
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	115, 165
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	2 cut(s)	177, 337
MluNI	TGGCCA	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	77, 224
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	17, 164, 293
Mox20I	TGGCCA	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	415
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	51, 54
NdeII	GATC	2 cut(s)	184, 277
NlaIII	CATG	2 cut(s)	32, 161
NmuCI	GTSAC	1 cut(s)	137
NotI	GCGGCCGC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	47, 50, 53, 56, 102
PleI	GAGTC	2 cut(s)	77, 224
PpsI	GAGTC	2 cut(s)	77, 224
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	83
SatI	GCNGC	5 cut(s)	46, 49, 52, 55, 101
Sau3AI	GATC	2 cut(s)	184, 277
SchI	GAGTC	2 cut(s)	77, 224
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	115, 165
SetI	ASST	9 cut(s)	39, 47, 81, 102, 110, 126, 276, 288, 360
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	177, 337
SsiI	CCGC	6 cut(s)	21, 48, 51, 55, 297, 405
SspI	AATATT	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	143, 424, 437
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	4 cut(s)	86, 165, 187, 401
TasI	AATT	2 cut(s)	177, 337
TauI	GCSGC	3 cut(s)	51, 54, 57
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	2 cut(s)	45, 100
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	189
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.