Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

41213698 .. 41216742

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGTGTGCCGGATCAACGCCGACTCTGCACTTATGAATCCAAACTCCCAAATCCTTGCTTTGAAAGGGATCCACTGAATGTCAAAATATTCCTCAAAATGCATAGGTCTGATTATGCTAAAAGATGGCTGAAGGAAATGCAAAAGATTGATAAGGACCACACCTTAACTCAAATTGAAACAGCATGGCAAAATCTGGCTGTGGATGCAGAGGATCTAGAAACTCTAGCCAACCTGGTCGTATGCTATCTTCACCTTGGAAAACCACCTTCTCGTTTTGTCAGCCAATCAAGACTTGCACATCCAGACCACGTCCTCGTCAAAGGTGCCTCAGCTGTAGAAGAGAGCTTTGACAGAGCTCTTCAATCAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Usp

Protein Analysis

125

Amino Acids

14.38

Weight (kDa)

6.96

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coatomer_E	PF04733	24 - 71	1.1e-13	Coatomer epsilon subunit
Coatomer_E	PF04733	66 - 124	5e-14	Coatomer epsilon subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AclWI	GGATC	4 cut(s)	21, 65, 78, 222
AcuI	CTGAAG	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	65, 179, 365
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	335, 348, 359
AluI	AGCT	3 cut(s)	335, 348, 359
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	4 cut(s)	21, 65, 78, 222
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	157
BamHI	GGATCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	361
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
Bbv12I	GWGCWC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	120
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	218, 227
BfmI	CTRYAG	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	157
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	72, 328
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	2 cut(s)	211, 301
BseMII	CTCAG	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	13, 70, 214
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	72, 328
BspPI	GGATC	4 cut(s)	21, 65, 78, 222
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	13, 70, 214
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	336, 366
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	2 cut(s)	211, 301
BstKTI	GATC	3 cut(s)	16, 73, 217
BstMBI	GATC	3 cut(s)	13, 70, 214
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 206
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	70, 214
BstYI	RGATCY	2 cut(s)	70, 214
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	211, 301
BtsIMutI	CAGTG	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	157
CsiI	ACCWGGT	1 cut(s)	234
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	7 cut(s)	130, 200, 230, 285, 335, 348, 359
CviKI_1	RGCY	7 cut(s)	130, 200, 230, 285, 335, 348, 359
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	3 cut(s)	15, 72, 216
DpnII	GATC	3 cut(s)	13, 70, 214
Eam1104I	CTCTTC	2 cut(s)	336, 366
EarI	CTCTTC	2 cut(s)	336, 366
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	189
FaiI	YATR	5 cut(s)	36, 105, 117, 187, 244
FatI	CATG	1 cut(s)	185
FokI	GGATG	2 cut(s)	218, 288
FriOI	GRGCYC	1 cut(s)	361
FspBI	CTAG	2 cut(s)	218, 227
HapII	CCGG	1 cut(s)	11
Hin1II	CATG	1 cut(s)	189
HinfI	GANTC	2 cut(s)	24, 38
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	218, 291, 305
HpyAV	CCTTC	2 cut(s)	127, 279
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	30, 103, 142, 209, 299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 206
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	13, 70, 214
LguI	GCTCTTC	1 cut(s)	366
LpnPI	CCDG	5 cut(s)	24, 182, 221, 248, 318
LweI	GCATC	1 cut(s)	196
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	2 cut(s)	218, 227
MaeII	ACGT	1 cut(s)	312
MalI	GATC	3 cut(s)	15, 72, 216
MboI	GATC	3 cut(s)	13, 70, 214
MboII	GAAGA	3 cut(s)	242, 353, 353
MflI	RGATCY	2 cut(s)	70, 214
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	104, 205, 326, 340
Mph1103I	ATGCAT	1 cut(s)	105
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	27, 206
NdeII	GATC	3 cut(s)	13, 70, 214
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	72, 328
NsiI	ATGCAT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	38
PflFI	GACNNNGTC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	72, 328
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	70, 214
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	167
Sau3AI	GATC	3 cut(s)	13, 70, 214
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	1 cut(s)	174
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	218, 227
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	315
TasI	AATT	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	81
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	157
XbaI	TCTAGA	1 cut(s)	217
XspI	CTAG	2 cut(s)	218, 227
Zsp2I	ATGCAT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.