Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

41253764 .. 41254820

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCAGAGCTAGAATACCTCCTAAATTACTCTTAGTACTGCTTTTCACATTAATCTTTGCAACTTATGTTATACAAGGATCCAGAACTCAAGTTGCAGCACTCCAAAACCATCAAAGGGTCTATGGTTCCTCTCCTTCAAAAGGAGAACAACTTAAGCAGGGTAGTGAGGAAAAGAAGAACTACGCAAGGAGACTGATGATTGGATCCACAGCACCAACATGTACTTATAATGAATGCAGAGGATGCAAGTACAAGTGCAGAGCTGAGCAAGTCCCAGTAGAAGGAAATGACCCGATCAATAGTGCTTACCACTACAGATGTGTTTGTCATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.68

Weight (kDa)

9.62

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stomagen	PF16851	63 - 111	2.6e-33	Stomagen

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AclWI	GGATC	4 cut(s)	75, 88, 201, 214
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	39, 226, 254
AfiI	CCNNNNNNNGG	3 cut(s)	118, 143, 284
AflII	CTTAAG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	141
AluBI	AGCT	2 cut(s)	11, 266
AluI	AGCT	2 cut(s)	11, 266
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	4 cut(s)	75, 88, 201, 214
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	98
AseI	ATTAAT	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	80, 206
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	316
BfrI	CTTAAG	1 cut(s)	155
BisI	GCNGC	1 cut(s)	99
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	39
BmiI	GGNNCC	3 cut(s)	82, 130, 208
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 143, 284
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	118, 143, 284
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	118, 143, 284
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	80, 206, 297
Bsp1720I	GCTNAGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	82, 130, 208
BspPI	GGATC	4 cut(s)	75, 88, 201, 214
BspTI	CTTAAG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	3 cut(s)	80, 206, 297
BstAFI	CTTAAG	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	34, 267
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	251
BstKTI	GATC	3 cut(s)	83, 209, 300
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	80, 206, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	80, 206
BstYI	RGATCY	2 cut(s)	80, 206
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	251
Csp6I	GTAC	3 cut(s)	38, 225, 253
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	3 cut(s)	5, 11, 266
CviKI_1	RGCY	3 cut(s)	5, 11, 266
CviQI	GTAC	3 cut(s)	38, 225, 253
DdeI	CTNAG	2 cut(s)	34, 267
DpnI	GATC	3 cut(s)	82, 208, 299
DpnII	GATC	3 cut(s)	80, 206, 297
EaeI	YGGCCR	1 cut(s)	3
EcoNI	CCTNNNNNAGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	225
FaiI	YATR	6 cut(s)	69, 74, 126, 223, 231, 333
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	147, 278
HpyCH4V	TGCA	5 cut(s)	62, 98, 240, 249, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	34, 267
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	3 cut(s)	80, 206, 297
LpnPI	CCDG	4 cut(s)	19, 97, 146, 291
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	12
MalI	GATC	3 cut(s)	82, 208, 299
MboI	GATC	3 cut(s)	80, 206, 297
MboII	GAAGA	1 cut(s)	190
MflI	RGATCY	2 cut(s)	80, 206
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	30, 142, 163, 236
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	53, 156
MslI	CAYNNNNRTG	1 cut(s)	220
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	3 cut(s)	80, 206, 297
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	3 cut(s)	82, 130, 208
NspI	RCATGY	1 cut(s)	225
PciI	ACATGT	1 cut(s)	221
PctI	GAATGC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	221
PshBI	ATTAAT	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	231
PspN4I	GGNNCC	3 cut(s)	82, 130, 208
PsuI	RGATCY	2 cut(s)	80, 206
RsaI	GTAC	3 cut(s)	39, 226, 254
RsaNI	GTAC	3 cut(s)	38, 225, 253
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	53, 156
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	80, 206, 297
ScaI	AGTACT	1 cut(s)	39
SetI	ASST	4 cut(s)	13, 22, 268, 338
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	90, 155
SmoI	CTYRAG	2 cut(s)	90, 155
Sse9I	AATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	12
TasI	AATT	1 cut(s)	26
TatI	WGTACW	3 cut(s)	37, 224, 252
Tru1I	TTAA	2 cut(s)	53, 156
Tru9I	TTAA	2 cut(s)	53, 156
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	53
XagI	CCTNNNNNAGG	1 cut(s)	141
XceI	RCATGY	1 cut(s)	225
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.