Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Forward (+)

57203652 .. 57212892

Gene Structure 9241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5160 bp

ATGGACCTCCCTCAGTACCTTCACCACCATCCAAGGTACGCTCCTTCCTCCTCCTCCTCTGACCCTAATTTCCCAAACTACCCTCACCGCACCACCAACCATTACCACCACCGCCACACTCCGCCTCCTCCTCCCCAACCCCAGCCCCCACAGCTCCGCCCACAATCCCCCTCCTCCTTCAAAACCCTACCCCCTCCTCCGCCGCCACCACCACATCCCCAAAGGACCACCTTCTCCCCCCACCCCATCGATTCCGATCATTCCAGAACCTTCTCCCCTCGCACCACTCACCGCCCGCCACCTCTCGATTCCGACCGGCCACGTCATCGCCTCTACCTCGAGTCCGGTCCGGATTACCGGGACCGGTCCAGGAACTATTCGCCGCGCGATTACGACCGCGAATTGCATAAACCCTATAGGCGCGATCCGGACGGCGGCGGCGGCGCTAGGTTTAGATCGGAGTACGAAGAACAACGGGATCGTCGAGTTGATGACGGTTATCGCCGTCGCTCGAGCAATCACGAAACGACGACGTTTCGCGAAGTGGAGTTCCAGGATTCGGGTTCGGGTTGCTACGACGAGAGCGCGTATGAGGAGCTGTTGAAGAGTGGGAGGAGATATGAGGCGTATGAGATTCAAAGGTGGGGTCTTGAGAGGGCCCAATCGGAGGAGGATTTGTACGATCCTTTCGAATTGGATGAGCACGATGAGGAGGAGGATCGGATTGTTTCGGAGAAGAGGGATTATTATGGTTCCGAATCAGGAAGAAGTAGTGGTACTAGTAGGTGGAAGCAGATACAAAAGAAGAGTGCTTTGCTTAGGCTTCAAACCCCGAAAACCCGGGACCGGAACTACTCTGCTTATTACGATAGTTCCGGCTCCTCCGGTGGATCATTCAGAGGGAAAGAACAGTATGAGTATGAGTATTCAGGTCATGGGAGGAAGGATGCAGTAGAAGAAGAGAGGCGTGGTGGTGGAGGAGAAGAGAGAGGCCAACAACAGAGAGGTGGGAGTAGTCCTCTGGACCTTGATGTTTCGTTTAAGTCGAATTCGCTGGTAGCCAAGCCGGTTAGAACTAGGGATGAGAAGAGAGGTTCAGTTTCGGATATGGATTGTTCAGAGTCACCACCTGCTAAGCTCCGTGAGGATGTTGTAAATTTGGATAGTTTGGCACTTGTTTCGAATAAGACATCGAGTCCTGGCAAGGAGGCCATGAAGTTGAAAGGAGAAGTTACTACTTCTGGCATGAATTCGCAGCCTTGTTCTGTTGTGACTGATGATGCGTTTGTAAAGAGTGAAGTGGAAACAGCACCCAAGGGCAAGATTTTACGTAAAGATGGCAAGGATGTTGGTTCCAGTCAGAAGTCTTCTCCCAACGTTTCTAAGAAGACAAAAGTAGTGAAGAAAATTGTGGCCAAGAAGACAGTGAAAAAGGTCACAAACCCCCCCACTTCACAGCCAGAAAGTAAGATTGATGAACCGGGGACGAGTACTGTTCACAGTCTATTTGCAGGCACTGGCAAAGGTGAAACCTCTTCCATTTCTGATCCTTGTCCAAATGATTTGCATGTGTTGCCTGTAGATAAGGAAGTAGAAGGTTCTCTGCCGAATGTTCTATCAGATGAATATGGCACTGTTCTCAACTCTTGTAGTAAGAATATTGGGAACAACTCAAGTGCAAATTTGGGCTCTTTGAGTCCTGCAGAGATTAATACTGATCAGAAGCACCCTCTGAATGTAGATACTCCGGTCAAGGGCTTGCTTACCATTTCAAATTTTAACAGCAATGCAACTGATTCAATCAAGGTAGCTACTTGTCCTGAAACTGGCGGTGTTGTGGATGTCAGCAAATCGATCTGTCAGAGTGGAAACATTTTATTGGTTGATAAAGTTGTACAAAAAGAATCATCACAGGCCATGTTGGCTGTAGAAGGCAATTTGAGCTCTGGTTTTTTAAATTCAGATAAGATGCATGAACTCATGAATGTAAAGGGTTCTGAACATGGGGCTGAAACCTTGGAGAAACTGTCACATCAGGAAATCATTGTTCCTGATGTTGGCACTGTGGATGCAGTTAGCGAACAACCTTGTAGATATCAGCTCCCCACATCACTTCAAAATGGTGGTGTTGTGGAAGAACTTCCTAAGGCTATATCTTCAGCAGAAAATAATATGGCGGTTGGTTTATCGAGTTCAGGGGAGACCAAAGCTGTCCGCTCCAAGATTGGTAGACGTACAAGGTGGGATTCTGATGAAGTTTATGTTAAGAAAGATACGAGCATTACTGTTTCCAATGGTGGGAATACCAATTCTTTTGGCAAGCAGTCATCACCTGATTGTGCCTCTAGATCTTTTGAAATTTGTGCCACAGAAAGATCTCCAAATATACCAAAATCAGTTGGAGATACTCATAGTGTTACACCTATGATTCAAAAGAAGAGAAAAGTTAAAACGCAGTTAGACTTTTCAAGGATATCCGACACTTGTGTAGACCCTGCAAATGTTTCTCCCTGCAAAGATGCACCGGATACAACTGTAAGTTCCTTCCTGAAGGATCCTAGTCATGCAGAAGTTTCTGTTTCTGGTGTTCAAAAGTTAGATATGGGATCACAGCCTGGTAATGATTGGGTCAGCGTTCTGAATGGGAAAAGTTCAGTAAATGGTTTTTCTGACACTAAGCTTTCAGCTAGAATTGATGCTAACTATGATACAAATGAGACTTCACCCGAGTATTCAAAGAGGAGAAAAGTGTCTGGCACTCATCTGGTATTGACTTCAGCTCAAACCAATGGAGGACCTGCAAATAAATCTACATCTTATATACAGGAATCTTCAACTCATAATGATGTTCCAACATATCAAGCGGACAAAGGTGCTTCTTCTAGCATAGGTTCTCAGTGTGCTACTTCTAATTTAATTCCATCTCCTGAGGAAATCAATGTCTATCTTGAGGACATTATGGCTGCAGTATCATCTGATACTGTAGCTGCAGCTAGGGACTCCTTTACTAATGATGATATGAAGATTAAGCACCAAGGTATTGACTCTTCTTCAGTTTCTGAAGGGTCAGGTATTCCACATATGCAAATCCCTTGTCCTTTACAATCACAGAATGAGGATAAAGAGGATGGTACTGAAGTTATGGTTGTAAATAATCATCACCTTGACATTTTGGATATAGATGGTAGTCATGAAAAAGACTTTGACGTTTGTGCAACAAATGAGCACATTATGGTTCAAGGTGAGACTGCTCCATGTACAATTCATTCAGAGCTTCAGCCTGCTGATTTGGGTATTAATTCTTTCAGTACAAATATAGAATCAGATTACCTCTGTGTTAAGGATAAACTGCCTTTTGTGCCAAGTTGTCTGCTTTCAATTGCTAATGACAATGAAGTAACTTCTACCAACTCTATTGATGAAGGCATGAAGTCTGTGTCTGATACGCTGTCAGATACAGGTACTCCAGAAACTTCAACTAGTATCACTGACGTGCATATGCTGATTTGTAATCCTTCGGTTATTAAAAGTTTTGATGAAAAAGTTTGTGCGGATGACCAGAAATTTGAGGTGAAGTCTGAGGTTGCATCCGCTGGGAATTTATTCTCAGAGACCAAAACTAATTTAACATTAGATAATGTAACTGAAGGTCACCAATCAGTCACAGAGAAGGCAGTACCTTTGAAATTGCAGGATTCCAAAAAGACATCTCATGGTCTGCATCTCATAAGTGCTGAATCTGCATTGAAGAACCAGCTGGGTCAAGCTACTCATAGGATTGTTCCAGGTCGTCCATTTTCTGCCTTTACTACCTCACAGAAGGCTACCTCTTCAACACATATATCAAAGCCTCGGTCTTGGCATCGAAATGCTAATTCATCTGTATCTCCTCTTCCTGTGAGTACTCTTCCACCTCAAAGGCAGTTGCCACAAAGAAATGGAAAACTTGAAAGTAATTCTTATGTTCGTAAAGGTAACACCCTTGTTAGAAGACGTGCTACAATTGCTGCTGTACCACAAAGCTCTCAAGGTCTCAGTTCATCTGTTCATCAGTTGAACTTTTCAGGTATAGATGGATTGAAGAAGAATGCAGGATCCGACAGTAGGGTTGACATTAAAAACCCTCCAAGAACAGGAGGACTCAATGCTTCTTCAGATAGGCCCCCAGCCCCACTACCCAGTGGAGCCAAAATGTCTGCATCTGCTGCCGTCTCTTCCGGGATTCCTACATCATCCCCACTAGCTGAGCCTCTTCTTAGTGATATCTCTGGAACTAAATCAGATCCTATGAATTGTTCGGAAACGAAAGATGCAGAAGGATCAGTCAAGGACTCGCTGGCAACTTCTGATACTCAGGAATACCATAGTGGTCCAGTCAACAATCTACATGATGGGAATCTGGCATCTTCAAATATGAAGAAGGTTATATATGTAAAGCGAAAATTAAATCAGTTGGTTGCATCATCTTCAAATCCGTCAGACCTTTCTGTCCACAATGCTGATAAGAACCAACCCTCAGATGGCTACTACAAGAGGCGCAAACATCAGCTAATTAGGTCTTCTTTGGAAAGTAATGGCAAAGATACGGTTCTCCTGCCCACTGACAATCTAAACTCAGGGGAGCAAAAGGCTCGTAAGGTTATCCCCAGTAGAACATTTAACAAGAAGCGATCACTTAAGGCTGTTGCGAGGATGATTAAAAAGAATTCTTTGGTCTGGACACCAAGTGGTACACAGTCATCAAATAATAATGGTAGTTCATATGACCATCAGAAGGTTCTGCCTCAGCTGTTTCCGTGGAAAAGAGCAAGATACTGGAGAACTGTCATGCAAAGTCAGGCTTCCAATTTCAATTATAGTTCCTCATCAACAATCAGTAAAAAGTTGCTGCTCTCAAGGATGAGGGATACTGTATACACTAGGTCAACCCACGGATTTTCACTTAAAAAGTACAAGGTATTAAGTGTTGGTGGATCTAGTTTAAAATGGTCAAAATCCATTGAAAGTCGCTCAAAGAAAGTTAATGAGGAAGCTACACGGGCTGTTGCTGAAGTAGAGAAGAAGAAAAGAGAACACAATGGTGCTGCCTGCACTAGTTCTGGTTCTAAAATCAGAAACTCACCGGGTAAGTCAATTCATAGTACCGTTGAGAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1719

Amino Acids

187.78

Weight (kDa)

8.18

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1138
AasI	GACNNNNNNGTC	1 cut(s)	4487
Acc36I	ACCTGC	2 cut(s)	1138, 2806
AccBSI	CCGCTC	1 cut(s)	2217
AccI	GTMKAC	3 cut(s)	2230, 2490, 4914
AccII	CGCG	6 cut(s)	385, 387, 399, 423, 540, 587
AccIII	TCCGGA	2 cut(s)	349, 427
AclI	AACGTT	1 cut(s)	1377
AcoI	YGGCCR	2 cut(s)	317, 1413
AdeI	CACNNNGTG	1 cut(s)	4727
AflII	CTTAAG	1 cut(s)	4676
AflIII	ACRYGT	1 cut(s)	5154
AgeI	ACCGGT	1 cut(s)	363
AhdI	GACNNNNNGTC	1 cut(s)	1194
AhlI	ACTAGT	3 cut(s)	779, 3479, 5093
AjiI	CACGTC	3 cut(s)	323, 3493, 3995
AjnI	CCWGG	5 cut(s)	368, 552, 1198, 2614, 3784
AleI	CACNNNNGTG	2 cut(s)	3491, 5079
Alw21I	GWGCWC	3 cut(s)	705, 1946, 3228
Alw26I	GTCTC	6 cut(s)	2195, 2711, 3239, 3605, 4037, 4216
AlwNI	CAGNNNCTG	2 cut(s)	1517, 3059
Ama87I	CYCGRG	4 cut(s)	338, 511, 840, 2726
Aor13HI	TCCGGA	2 cut(s)	349, 427
AoxI	GGCC	7 cut(s)	317, 657, 991, 1209, 1413, 1914, 4160
ApaI	GGGCCC	1 cut(s)	661
ApeKI	GCWGC	8 cut(s)	1255, 2963, 2987, 2990, 4007, 4205, 4888, 5084
ArsI	GACNNNNNNTTYG	8 cut(s)	631, 663, 3079, 3111, 3548, 3580, 3839, 3871
AseI	ATTAAT	2 cut(s)	1710, 3297
AsiGI	ACCGGT	1 cut(s)	363
Asp700I	GAANNNNTTC	2 cut(s)	2139, 3602
AspLEI	GCGC	5 cut(s)	387, 423, 446, 587, 4539
AsuC2I	CCSGG	6 cut(s)	359, 841, 842, 1482, 4219, 5124
AsuII	TTCGAA	2 cut(s)	690, 1181
AvaI	CYCGRG	4 cut(s)	338, 511, 840, 2726
AvaII	GGWCC	9 cut(s)	4, 225, 347, 361, 366, 844, 1024, 2795, 4370
AxyI	CCTNAGG	2 cut(s)	2145, 2928
BaeGI	GKGCMC	1 cut(s)	661
BaeI	ACNNNNGTAYC	6 cut(s)	1734, 1767, 2520, 2553, 3123, 3156
BalI	TGGCCA	1 cut(s)	1415
BamHI	GGATCC	2 cut(s)	2554, 4094
BanII	GRGCYC	3 cut(s)	661, 1691, 1946
BarI	GAAGNNNNNNTAC	8 cut(s)	760, 792, 3031, 3063, 3876, 3908, 3982, 4014
BbsI	GAAGAC	5 cut(s)	1359, 1394, 1427, 3997, 4551
Bbv12I	GWGCWC	3 cut(s)	705, 1946, 3228
BbvCI	CCTCAGC	1 cut(s)	4785
BbvI	GCAGC	8 cut(s)	1267, 2950, 2974, 3002, 3994, 4192, 4875, 5071
BceAI	ACGGC	3 cut(s)	448, 489, 4193
BcgI	CGANNNNNNTGC	4 cut(s)	1161, 1195, 4613, 4647
BciT130I	CCWGG	5 cut(s)	370, 554, 1200, 2616, 3786
BciVI	GTATCC	2 cut(s)	2521, 4900
BclI	TGATCA	1 cut(s)	1717
BcnI	CCSGG	6 cut(s)	359, 841, 842, 1482, 4219, 5124
BcoDI	GTCTC	6 cut(s)	2195, 2711, 3239, 3605, 4037, 4216
BcuI	ACTAGT	3 cut(s)	779, 3479, 5093
BfmI	CTRYAG	7 cut(s)	415, 1578, 1701, 1926, 2964, 2982, 2988
BfoI	RGCGCY	1 cut(s)	447
BfrI	CTTAAG	1 cut(s)	4676
BfuAI	ACCTGC	2 cut(s)	1138, 2806
BfuI	GTATCC	2 cut(s)	2521, 4900
BglI	GCCNNNNNGGC	1 cut(s)	1922
BglII	AGATCT	2 cut(s)	2348, 2375
BlpI	GCTNAGC	2 cut(s)	1134, 4245
BmcAI	AGTACT	2 cut(s)	1492, 3904
Bme18I	GGWCC	9 cut(s)	4, 225, 347, 361, 366, 844, 1024, 2795, 4370
BmeRI	GACNNNNNGTC	1 cut(s)	1194
BmeT110I	CYCGRG	4 cut(s)	338, 511, 840, 2726
BmgBI	CACGTC	3 cut(s)	323, 3493, 3995
BmrI	ACTGGG	2 cut(s)	4173, 4641
BmuI	ACTGGG	2 cut(s)	4173, 4641
BpiI	GAAGAC	5 cut(s)	1359, 1394, 1427, 3997, 4551
BplI	GAGNNNNNCTC	2 cut(s)	1003, 1035
BpmI	CTGGAG	2 cut(s)	3450, 4837
Bpu10I	CCTNAGC	2 cut(s)	818, 4785
Bpu1102I	GCTNAGC	2 cut(s)	1134, 4245
Bpu14I	TTCGAA	2 cut(s)	690, 1181
BpuEI	CTTGAG	5 cut(s)	671, 1657, 2969, 4011, 4879
BpuMI	CCSGG	6 cut(s)	359, 841, 842, 1482, 4219, 5124
Bsa29I	ATCGAT	2 cut(s)	249, 1853
BsaAI	YACGTR	1 cut(s)	1331
BsaBI	GATNNNNATC	2 cut(s)	255, 4395
BsaI	GGTCTC	3 cut(s)	2195, 3605, 4037
BsaJI	CCNNGG	9 cut(s)	32, 840, 1314, 1481, 2016, 3034, 3851, 4796, 4930
BsaWI	WCCGGW	8 cut(s)	344, 349, 363, 427, 846, 884, 1747, 2524
BsaXI	ACNNNNNCTCC	8 cut(s)	109, 139, 662, 692, 2012, 2042, 3448, 3478
Bse118I	RCCGGY	3 cut(s)	315, 363, 1066
Bse1I	ACTGG	7 cut(s)	1356, 1522, 1831, 4179, 4373, 4647, 4820
Bse21I	CCTNAGG	2 cut(s)	2145, 2928
Bse3DI	GCAATG	1 cut(s)	1792
Bse8I	GATNNNNATC	2 cut(s)	255, 4395
BseAI	TCCGGA	2 cut(s)	349, 427
BseBI	CCWGG	5 cut(s)	370, 554, 1200, 2616, 3786
BseCI	ATCGAT	2 cut(s)	249, 1853
BseDI	CCNNGG	9 cut(s)	32, 840, 1314, 1481, 2016, 3034, 3851, 4796, 4930
BseJI	GATNNNNATC	2 cut(s)	255, 4395
BseMI	GCAATG	1 cut(s)	1792
BseNI	ACTGG	7 cut(s)	1356, 1522, 1831, 4179, 4373, 4647, 4820
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	8 cut(s)	1267, 2950, 2974, 3002, 3994, 4192, 4875, 5071
BseYI	CCCAGC	4 cut(s)	141, 3593, 3757, 4165
BsgI	GTGCAG	1 cut(s)	5074
Bsh1236I	CGCG	6 cut(s)	385, 387, 399, 423, 540, 587
Bsh1285I	CGRYCG	2 cut(s)	316, 397
BshFI	GGCC	7 cut(s)	319, 659, 993, 1211, 1415, 1916, 4162
BshTI	ACCGGT	1 cut(s)	363
BshVI	ATCGAT	2 cut(s)	249, 1853
BsiEI	CGRYCG	2 cut(s)	316, 397
BsiHKAI	GWGCWC	3 cut(s)	705, 1946, 3228
BsiHKCI	CYCGRG	4 cut(s)	338, 511, 840, 2726
BslFI	GGGAC	4 cut(s)	374, 857, 1498, 3011
BsmAI	GTCTC	6 cut(s)	2195, 2711, 3239, 3605, 4037, 4216
BsmBI	CGTCTC	1 cut(s)	4216
BsmFI	GGGAC	4 cut(s)	374, 857, 1498, 3011
BsmI	GAATGC	1 cut(s)	4093
BsnI	GGCC	7 cut(s)	319, 659, 993, 1211, 1415, 1916, 4162
Bso31I	GGTCTC	3 cut(s)	2195, 3605, 4037
BsoBI	CYCGRG	4 cut(s)	338, 511, 840, 2726
Bsp119I	TTCGAA	2 cut(s)	690, 1181
Bsp120I	GGGCCC	1 cut(s)	657
Bsp1286I	GDGCHC	5 cut(s)	661, 705, 1691, 1946, 3228
Bsp13I	TCCGGA	2 cut(s)	349, 427
Bsp1407I	TGTACA	2 cut(s)	1894, 3257
Bsp1720I	GCTNAGC	2 cut(s)	1134, 4245
Bsp68I	TCGCGA	1 cut(s)	540
BspANI	GGCC	7 cut(s)	319, 659, 993, 1211, 1415, 1916, 4162
BspDI	ATCGAT	2 cut(s)	249, 1853
BspEI	TCCGGA	2 cut(s)	349, 427
BspFNI	CGCG	6 cut(s)	385, 387, 399, 423, 540, 587
BspHI	TCATGA	2 cut(s)	1980, 3190
BspMAI	CTGCAG	3 cut(s)	1705, 2968, 2992
BspMI	ACCTGC	2 cut(s)	1138, 2806
BspT104I	TTCGAA	2 cut(s)	690, 1181
BspTI	CTTAAG	1 cut(s)	4676
BspTNI	GGTCTC	3 cut(s)	2195, 3605, 4037
BsrBI	CCGCTC	1 cut(s)	2217
BsrDI	GCAATG	1 cut(s)	1792
BsrFI	RCCGGY	3 cut(s)	315, 363, 1066
BsrGI	TGTACA	2 cut(s)	1894, 3257
BsrI	ACTGG	7 cut(s)	1356, 1522, 1831, 4179, 4373, 4647, 4820
BssAI	RCCGGY	3 cut(s)	315, 363, 1066
BssECI	CCNNGG	9 cut(s)	32, 840, 1314, 1481, 2016, 3034, 3851, 4796, 4930
BssNAI	GTATAC	1 cut(s)	4915
BssT1I	CCWWGG	4 cut(s)	32, 1314, 2016, 3034
Bst1107I	GTATAC	1 cut(s)	4915
Bst2UI	CCWGG	5 cut(s)	370, 554, 1200, 2616, 3786
BstAFI	CTTAAG	1 cut(s)	4676
BstAPI	GCANNNNNTGC	2 cut(s)	1573, 4205
BstAUI	TGTACA	2 cut(s)	1894, 3257
BstBAI	YACGTR	1 cut(s)	1331
BstBI	TTCGAA	2 cut(s)	690, 1181
BstC8I	GCNNGC	7 cut(s)	296, 1513, 1760, 2321, 3282, 4338, 5089
BstDSI	CCRYGG	2 cut(s)	4796, 4930
BstEII	GGTNACC	1 cut(s)	3650
BstFNI	CGCG	6 cut(s)	385, 387, 399, 423, 540, 587
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	5 cut(s)	387, 423, 446, 587, 4539
BstMAI	GTCTC	6 cut(s)	2195, 2711, 3239, 3605, 4037, 4216
BstMCI	CGRYCG	2 cut(s)	316, 397
BstNI	CCWGG	5 cut(s)	370, 554, 1200, 2616, 3786
BstNSI	RCATGY	2 cut(s)	1571, 5158
BstPI	GGTNACC	1 cut(s)	3650
BstSFI	CTRYAG	7 cut(s)	415, 1578, 1701, 1926, 2964, 2982, 2988
BstSLI	GKGCMC	1 cut(s)	661
BstSNI	TACGTA	1 cut(s)	1331
BstUI	CGCG	6 cut(s)	385, 387, 399, 423, 540, 587
BstV1I	GCAGC	8 cut(s)	1267, 2950, 2974, 3002, 3994, 4192, 4875, 5071
BstV2I	GAAGAC	5 cut(s)	1359, 1394, 1427, 3997, 4551
BstX2I	RGATCY	6 cut(s)	2348, 2375, 2554, 4094, 4282, 4973
BstYI	RGATCY	6 cut(s)	2348, 2375, 2554, 4094, 4282, 4973
BstZ17I	GTATAC	1 cut(s)	4915
Bsu15I	ATCGAT	2 cut(s)	249, 1853
Bsu36I	CCTNAGG	2 cut(s)	2145, 2928
BsuI	GTATCC	2 cut(s)	2521, 4900
BsuRI	GGCC	7 cut(s)	319, 659, 993, 1211, 1415, 1916, 4162
BsuTUI	ATCGAT	2 cut(s)	249, 1853
BtgI	CCRYGG	2 cut(s)	4796, 4930
BtgZI	GCGATG	1 cut(s)	311
BtrI	CACGTC	3 cut(s)	323, 3493, 3995
BtsIMutI	CAGTG	8 cut(s)	1431, 1515, 1632, 2061, 2903, 3486, 4186, 4599
BtuMI	TCGCGA	1 cut(s)	540
BveI	ACCTGC	2 cut(s)	1138, 2806
Cac8I	GCNNGC	7 cut(s)	296, 1513, 1760, 2321, 3282, 4338, 5089
CaiI	CAGNNNCTG	2 cut(s)	1517, 3059
CciI	TCATGA	2 cut(s)	1980, 3190
CfoI	GCGC	5 cut(s)	387, 423, 446, 587, 4539
Cfr10I	RCCGGY	3 cut(s)	315, 363, 1066
Cfr9I	CCCGGG	1 cut(s)	840
ClaI	ATCGAT	2 cut(s)	249, 1853
CpoI	CGGWCCG	1 cut(s)	347
CspAI	ACCGGT	1 cut(s)	363
CspI	CGGWCCG	1 cut(s)	347
DraI	TTTAAA	2 cut(s)	1956, 4983
DraIII	CACNNNGTG	1 cut(s)	4727
DrdI	GACNNNNNNGTC	1 cut(s)	4487
DriI	GACNNNNNGTC	1 cut(s)	1194
DseDI	GACNNNNNNGTC	1 cut(s)	4487
EaeI	YGGCCR	2 cut(s)	317, 1413
Eam1105I	GACNNNNNGTC	1 cut(s)	1194
EciI	GGCGGA	3 cut(s)	111, 146, 189
Ecl136II	GAGCTC	1 cut(s)	1944
Eco105I	TACGTA	1 cut(s)	1331
Eco130I	CCWWGG	4 cut(s)	32, 1314, 2016, 3034
Eco24I	GRGCYC	3 cut(s)	661, 1691, 1946
Eco31I	GGTCTC	3 cut(s)	2195, 3605, 4037
Eco32I	GATATC	3 cut(s)	2096, 2475, 4264
Eco47I	GGWCC	9 cut(s)	4, 225, 347, 361, 366, 844, 1024, 2795, 4370
Eco53kI	GAGCTC	1 cut(s)	1944
Eco81I	CCTNAGG	2 cut(s)	2145, 2928
Eco88I	CYCGRG	4 cut(s)	338, 511, 840, 2726
Eco91I	GGTNACC	1 cut(s)	3650
EcoICRI	GAGCTC	1 cut(s)	1944
EcoO109I	RGGNCCY	3 cut(s)	657, 2795, 4161
EcoO65I	GGTNACC	1 cut(s)	3650
EcoRI	GAATTC	3 cut(s)	1048, 1249, 4705
EcoRII	CCWGG	5 cut(s)	368, 552, 1198, 2614, 3784
EcoRV	GATATC	3 cut(s)	2096, 2475, 4264
EcoT14I	CCWWGG	4 cut(s)	32, 1314, 2016, 3034
EcoT22I	ATGCAT	1 cut(s)	1974
EcoT38I	GRGCYC	3 cut(s)	661, 1691, 1946
ErhI	CCWWGG	4 cut(s)	32, 1314, 2016, 3034
Esp3I	CGTCTC	1 cut(s)	4216
FalI	AAGNNNNNCTT	4 cut(s)	3943, 3975, 4825, 4857
FaqI	GGGAC	4 cut(s)	374, 857, 1498, 3011
FauI	CCCGC	1 cut(s)	303
FauNDI	CATATG	3 cut(s)	3081, 3498, 4762
FbaI	TGATCA	1 cut(s)	1717
FblI	GTMKAC	3 cut(s)	2230, 2490, 4914
FriOI	GRGCYC	3 cut(s)	661, 1691, 1946
GlaI	GCGC	5 cut(s)	386, 422, 445, 586, 4538
GsaI	CCCAGC	4 cut(s)	145, 3597, 3761, 4169
GsuI	CTGGAG	2 cut(s)	3450, 4837
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	7 cut(s)	319, 659, 993, 1211, 1415, 1916, 4162
HhaI	GCGC	5 cut(s)	387, 423, 446, 587, 4539
Hin6I	GCGC	5 cut(s)	385, 421, 444, 585, 4537
HinP1I	GCGC	5 cut(s)	385, 421, 444, 585, 4537
HincII	GTYRAC	3 cut(s)	4111, 4378, 4926
HindII	GTYRAC	3 cut(s)	4111, 4378, 4926
HindIII	AAGCTT	1 cut(s)	2678
Hpy166II	GTNNAC	9 cut(s)	1498, 2231, 2491, 4111, 4378, 4492, 4733, 4915, 4926
Hpy8I	GTNNAC	9 cut(s)	1498, 2231, 2491, 4111, 4378, 4492, 4733, 4915, 4926
Hpy99I	CGWCG	5 cut(s)	486, 510, 532, 535, 581
HpyCH4IV	ACGT	8 cut(s)	322, 533, 1330, 1377, 2233, 3207, 3492, 3994
HpySE526I	ACGT	8 cut(s)	322, 533, 1330, 1377, 2233, 3207, 3492, 3994
HspAI	GCGC	5 cut(s)	385, 421, 444, 585, 4537
Kpn2I	TCCGGA	2 cut(s)	349, 427
Ksp22I	TGATCA	1 cut(s)	1717
Lsp1109I	GCAGC	8 cut(s)	1267, 2950, 2974, 3002, 3994, 4192, 4875, 5071
MaeII	ACGT	8 cut(s)	322, 533, 1330, 1377, 2233, 3207, 3492, 3994
MbiI	CCGCTC	1 cut(s)	2217
MfeI	CAATTG	2 cut(s)	3378, 4002
MflI	RGATCY	6 cut(s)	2348, 2375, 2554, 4094, 4282, 4973
MhlI	GDGCHC	5 cut(s)	661, 705, 1691, 1946, 3228
MlsI	TGGCCA	1 cut(s)	1415
MluNI	TGGCCA	1 cut(s)	1415
MlyI	GAGTC	8 cut(s)	350, 1130, 1204, 1705, 2993, 3038, 4134, 4325
MmeI	TCCRAC	5 cut(s)	336, 2380, 2502, 2876, 4122
Mox20I	TGGCCA	1 cut(s)	1415
Mph1103I	ATGCAT	1 cut(s)	1974
MroI	TCCGGA	2 cut(s)	349, 427
MroXI	GAANNNNTTC	2 cut(s)	2139, 3602
MscI	TGGCCA	1 cut(s)	1415
MslI	CAYNNNNRTG	4 cut(s)	2844, 3491, 3867, 5079
Msp20I	TGGCCA	1 cut(s)	1415
MspA1I	CMGCKG	3 cut(s)	3593, 3757, 4789
MspCI	CTTAAG	1 cut(s)	4676
MunI	CAATTG	2 cut(s)	3378, 4002
Mva1269I	GAATGC	1 cut(s)	4093
MvaI	CCWGG	5 cut(s)	370, 554, 1200, 2616, 3786
MvnI	CGCG	6 cut(s)	385, 387, 399, 423, 540, 587
NciI	CCSGG	6 cut(s)	359, 841, 842, 1482, 4219, 5124
NdeI	CATATG	3 cut(s)	3081, 3498, 4762
NmuCI	GTSAC	6 cut(s)	1122, 1270, 1435, 2028, 3650, 3661
NruI	TCGCGA	1 cut(s)	540
NsiI	ATGCAT	1 cut(s)	1974
NspI	RCATGY	2 cut(s)	1571, 5158
NspV	TTCGAA	2 cut(s)	690, 1181
OliI	CACNNNNGTG	2 cut(s)	3491, 5079
PaeR7I	CTCGAG	2 cut(s)	338, 511
PagI	TCATGA	2 cut(s)	1980, 3190
PaqCI	CACCTGC	1 cut(s)	1138
PciI	ACATGT	1 cut(s)	5154
PcsI	WCGNNNNNNNCGW	3 cut(s)	481, 687, 1043
PctI	GAATGC	1 cut(s)	4093
PdmI	GAANNNNTTC	2 cut(s)	2139, 3602
PfoI	TCCNGGA	3 cut(s)	368, 552, 4217
PinAI	ACCGGT	1 cut(s)	363
PleI	GAGTC	8 cut(s)	349, 1129, 1203, 1704, 2993, 3038, 4134, 4325
PpsI	GAGTC	8 cut(s)	349, 1129, 1203, 1704, 2993, 3038, 4134, 4325
Ppu21I	YACGTR	1 cut(s)	1331
PpuMI	RGGWCCY	1 cut(s)	2795
PscI	ACATGT	1 cut(s)	5154
PshBI	ATTAAT	2 cut(s)	1710, 3297
Psp124BI	GAGCTC	1 cut(s)	1946
Psp1406I	AACGTT	1 cut(s)	1377
Psp5II	RGGWCCY	1 cut(s)	2795
Psp6I	CCWGG	5 cut(s)	368, 552, 1198, 2614, 3784
PspEI	GGTNACC	1 cut(s)	3650
PspFI	CCCAGC	4 cut(s)	141, 3593, 3757, 4165
PspGI	CCWGG	5 cut(s)	368, 552, 1198, 2614, 3784
PspOMI	GGGCCC	1 cut(s)	657
PspPPI	RGGWCCY	1 cut(s)	2795
PspXI	VCTCGAGB	2 cut(s)	338, 511
PstI	CTGCAG	3 cut(s)	1705, 2968, 2992
PstNI	CAGNNNCTG	2 cut(s)	1517, 3059
PsuI	RGATCY	6 cut(s)	2348, 2375, 2554, 4094, 4282, 4973
PvuII	CAGCTG	2 cut(s)	3757, 4789
RruI	TCGCGA	1 cut(s)	540
RseI	CAYNNNNRTG	4 cut(s)	2844, 3491, 3867, 5079
Rsr2I	CGGWCCG	1 cut(s)	347
RsrII	CGGWCCG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	1946
ScaI	AGTACT	2 cut(s)	1492, 3904
SchI	GAGTC	8 cut(s)	350, 1130, 1204, 1705, 2993, 3038, 4134, 4325
SduI	GDGCHC	5 cut(s)	661, 705, 1691, 1946, 3228
SfcI	CTRYAG	7 cut(s)	415, 1578, 1701, 1926, 2964, 2982, 2988
Sfr274I	CTCGAG	2 cut(s)	338, 511
SfuI	TTCGAA	2 cut(s)	690, 1181
SinI	GGWCC	9 cut(s)	4, 225, 347, 361, 366, 844, 1024, 2795, 4370
SlaI	CTCGAG	2 cut(s)	338, 511
SmaI	CCCGGG	1 cut(s)	842
SmiMI	CAYNNNNRTG	4 cut(s)	2844, 3491, 3867, 5079
SmlI	CTYRAG	8 cut(s)	338, 511, 650, 1672, 2948, 4026, 4676, 4894
SmoI	CTYRAG	8 cut(s)	338, 511, 650, 1672, 2948, 4026, 4676, 4894
SnaBI	TACGTA	1 cut(s)	1331
SpeI	ACTAGT	3 cut(s)	779, 3479, 5093
SspI	AATATT	1 cut(s)	1660
SstI	GAGCTC	1 cut(s)	1946
StyI	CCWWGG	4 cut(s)	32, 1314, 2016, 3034
TaiI	ACGT	8 cut(s)	325, 536, 1333, 1380, 2236, 3210, 3495, 3997
TaqII	GACCGA	1 cut(s)	3843
TatI	WGTACW	6 cut(s)	1490, 1894, 3257, 3308, 3902, 4950
TauI	GCSGC	5 cut(s)	205, 385, 438, 441, 444
TscAI	CASTG	8 cut(s)	1431, 1522, 1639, 2068, 2903, 3493, 4186, 4606
TseFI	GTSAC	6 cut(s)	1122, 1270, 1435, 2028, 3650, 3661
TseI	GCWGC	8 cut(s)	1255, 2963, 2987, 2990, 4007, 4205, 4888, 5084
Tsp45I	GTSAC	6 cut(s)	1122, 1270, 1435, 2028, 3650, 3661
TspGWI	ACGGA	4 cut(s)	1130, 4464, 4785, 4947
TspMI	CCCGGG	1 cut(s)	840
TspRI	CASTG	8 cut(s)	1431, 1522, 1639, 2068, 2903, 3493, 4186, 4606
Vha464I	CTTAAG	1 cut(s)	4676
VpaK11BI	GGWCC	9 cut(s)	4, 225, 347, 361, 366, 844, 1024, 2795, 4370
VspI	ATTAAT	2 cut(s)	1710, 3297
XbaI	TCTAGA	1 cut(s)	2345
XceI	RCATGY	2 cut(s)	1571, 5158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	4517
XhoI	CTCGAG	2 cut(s)	338, 511
XmaI	CCCGGG	1 cut(s)	840
XmiI	GTMKAC	3 cut(s)	2230, 2490, 4914
XmnI	GAANNNNTTC	2 cut(s)	2139, 3602
ZrmI	AGTACT	2 cut(s)	1492, 3904
Zsp2I	ATGCAT	1 cut(s)	1974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.