zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 |
| fragaria_vesca | FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 |
| malus_domestica | MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1 |
| prunus_persica | Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 |
| pyrus_communis | pycom08g13490 pycom08g13510 |
| rosa_chinensis | RchiOBHm_Chr6g0296771 |
| rosa_laevigata | RLG00000011660 RLG00000013665 |
| rosa_multiflora | Rmu_ssc0000192.1_g000011 |
| rosa_rugosa | Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000 |
| rosa_samantha | Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600 |
| rosa_wichuraiana | Rw6G032950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 5562, 6371 |
| AasI | GACNNNNNNGTC | 4 cut(s) | 1237, 1490, 1589, 5084 |
| Acc36I | ACCTGC | 1 cut(s) | 340 |
| AccB1I | GGYRCC | 1 cut(s) | 2999 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4736 |
| AccBSI | CCGCTC | 1 cut(s) | 283 |
| AccI | GTMKAC | 4 cut(s) | 1364, 1888, 4322, 4331 |
| AccII | CGCG | 1 cut(s) | 5535 |
| AccIII | TCCGGA | 2 cut(s) | 3015, 3607 |
| AcoI | YGGCCR | 1 cut(s) | 1805 |
| AfeI | AGCGCT | 1 cut(s) | 1719 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 802, 2597, 2641, 3434, 4418, 4736, 4932, 5621, 5799 |
| AflIII | ACRYGT | 1 cut(s) | 815 |
| AgeI | ACCGGT | 1 cut(s) | 2365 |
| AhlI | ACTAGT | 1 cut(s) | 5498 |
| AjiI | CACGTC | 1 cut(s) | 2292 |
| AjnI | CCWGG | 7 cut(s) | 1783, 2038, 3256, 3820, 4000, 4426, 5201 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2964, 2996 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3982, 4014 |
| Alw21I | GWGCWC | 4 cut(s) | 961, 1697, 3600, 5621 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1295, 1514, 2909, 5246 |
| Ama87I | CYCGRG | 2 cut(s) | 842, 5413 |
| Aor13HI | TCCGGA | 2 cut(s) | 3015, 3607 |
| Aor51HI | AGCGCT | 1 cut(s) | 1719 |
| AoxI | GGCC | 4 cut(s) | 1572, 1805, 5433, 6007 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2340, 2372, 2513, 2545 |
| AseI | ATTAAT | 4 cut(s) | 1587, 1950, 2880, 5231 |
| AsiGI | ACCGGT | 1 cut(s) | 2365 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 4472, 5260, 5697 |
| AspA2I | CCTAGG | 3 cut(s) | 932, 1235, 3494 |
| AspLEI | GCGC | 3 cut(s) | 1720, 3835, 5535 |
| AspS9I | GGNCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| AsuC2I | CCSGG | 4 cut(s) | 477, 4100, 5794, 6140 |
| AsuII | TTCGAA | 2 cut(s) | 4405, 6147 |
| AvaI | CYCGRG | 2 cut(s) | 842, 5413 |
| AvaII | GGWCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| AvrII | CCTAGG | 3 cut(s) | 932, 1235, 3494 |
| BalI | TGGCCA | 1 cut(s) | 1807 |
| BamHI | GGATCC | 1 cut(s) | 4102 |
| BanI | GGYRCC | 1 cut(s) | 2999 |
| BanII | GRGCYC | 1 cut(s) | 3908 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6113, 6145 |
| BauI | CACGAG | 1 cut(s) | 5748 |
| BbsI | GAAGAC | 7 cut(s) | 1416, 1763, 2040, 3570, 4391, 4491, 4760 |
| Bbv12I | GWGCWC | 4 cut(s) | 961, 1697, 3600, 5621 |
| BbvCI | CCTCAGC | 1 cut(s) | 345 |
| BceAI | ACGGC | 8 cut(s) | 82, 367, 492, 516, 780, 2445, 4965, 5520 |
| BciT130I | CCWGG | 7 cut(s) | 1785, 2040, 3258, 3822, 4002, 4428, 5203 |
| BciVI | GTATCC | 3 cut(s) | 2384, 3354, 6083 |
| BcnI | CCSGG | 4 cut(s) | 477, 4100, 5794, 6140 |
| BcuI | ACTAGT | 1 cut(s) | 5498 |
| BfmI | CTRYAG | 6 cut(s) | 526, 2421, 2670, 3027, 3166, 3561 |
| BfoI | RGCGCY | 1 cut(s) | 1721 |
| BfuAI | ACCTGC | 1 cut(s) | 340 |
| BfuI | GTATCC | 3 cut(s) | 2384, 3354, 6083 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 5441 |
| BglII | AGATCT | 4 cut(s) | 220, 1542, 2755, 2807 |
| BlnI | CCTAGG | 3 cut(s) | 932, 1235, 3494 |
| BlpI | GCTNAGC | 3 cut(s) | 1179, 3680, 5065 |
| BmcAI | AGTACT | 1 cut(s) | 5822 |
| Bme18I | GGWCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| BmeT110I | CYCGRG | 2 cut(s) | 842, 5413 |
| BmgBI | CACGTC | 1 cut(s) | 2292 |
| BmgT120I | GGNCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| BmiI | GGNNCC | 6 cut(s) | 1318, 2733, 3001, 4104, 5551, 5780 |
| BmrI | ACTGGG | 2 cut(s) | 1935, 4185 |
| BmuI | ACTGGG | 2 cut(s) | 1935, 4185 |
| BoxI | GACNNNNGTC | 1 cut(s) | 6111 |
| BpiI | GAAGAC | 7 cut(s) | 1416, 1763, 2040, 3570, 4391, 4491, 4760 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1604, 1636, 5396, 5428 |
| BpmI | CTGGAG | 6 cut(s) | 269, 642, 3279, 4734, 5242, 6421 |
| Bpu10I | CCTNAGC | 2 cut(s) | 345, 965 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1179, 3680, 5065 |
| Bpu14I | TTCGAA | 2 cut(s) | 4405, 6147 |
| BpuEI | CTTGAG | 4 cut(s) | 3162, 3894, 4586, 6153 |
| BpuMI | CCSGG | 4 cut(s) | 477, 4100, 5794, 6140 |
| BsaAI | YACGTR | 3 cut(s) | 818, 4381, 4385 |
| BsaBI | GATNNNNATC | 4 cut(s) | 861, 1647, 2989, 3036 |
| BsaI | GGTCTC | 2 cut(s) | 1020, 2930 |
| BsaWI | WCCGGW | 4 cut(s) | 2365, 3015, 3283, 3607 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 802, 2597, 2641, 3434, 4418, 4736, 4932, 5621, 5799 |
| Bse118I | RCCGGY | 2 cut(s) | 2365, 6398 |
| Bse3DI | GCAATG | 5 cut(s) | 178, 919, 2184, 3930, 5692 |
| Bse8I | GATNNNNATC | 4 cut(s) | 861, 1647, 2989, 3036 |
| BseAI | TCCGGA | 2 cut(s) | 3015, 3607 |
| BseBI | CCWGG | 7 cut(s) | 1785, 2040, 3258, 3822, 4002, 4428, 5203 |
| BseJI | GATNNNNATC | 4 cut(s) | 861, 1647, 2989, 3036 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 802, 2597, 2641, 3434, 4418, 4736, 4932, 5621, 5799 |
| BseMI | GCAATG | 5 cut(s) | 178, 919, 2184, 3930, 5692 |
| BseYI | CCCAGC | 2 cut(s) | 1312, 3816 |
| BsgI | GTGCAG | 2 cut(s) | 1224, 5768 |
| Bsh1236I | CGCG | 1 cut(s) | 5535 |
| Bsh1285I | CGRYCG | 1 cut(s) | 6060 |
| BshFI | GGCC | 4 cut(s) | 1574, 1807, 5435, 6009 |
| BshNI | GGYRCC | 1 cut(s) | 2999 |
| BshTI | ACCGGT | 1 cut(s) | 2365 |
| BsiEI | CGRYCG | 1 cut(s) | 6060 |
| BsiHKAI | GWGCWC | 4 cut(s) | 961, 1697, 3600, 5621 |
| BsiHKCI | CYCGRG | 2 cut(s) | 842, 5413 |
| BsiSI | CCGG | 9 cut(s) | 476, 2366, 3016, 3284, 3608, 4099, 5794, 6140, 6399 |
| BsiWI | CGTACG | 1 cut(s) | 4381 |
| BslFI | GGGAC | 5 cut(s) | 2281, 2618, 3329, 4757, 5859 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 802, 2597, 2641, 3434, 4418, 4736, 4932, 5621, 5799 |
| BsmBI | CGTCTC | 2 cut(s) | 1785, 6099 |
| BsmFI | GGGAC | 5 cut(s) | 2281, 2618, 3329, 4757, 5859 |
| BsmI | GAATGC | 3 cut(s) | 5069, 5157, 6124 |
| BsnI | GGCC | 4 cut(s) | 1574, 1807, 5435, 6009 |
| Bso31I | GGTCTC | 2 cut(s) | 1020, 2930 |
| BsoBI | CYCGRG | 2 cut(s) | 842, 5413 |
| Bsp119I | TTCGAA | 2 cut(s) | 4405, 6147 |
| Bsp1286I | GDGCHC | 5 cut(s) | 961, 1697, 3600, 3908, 5621 |
| Bsp13I | TCCGGA | 2 cut(s) | 3015, 3607 |
| Bsp1407I | TGTACA | 1 cut(s) | 2945 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1179, 3680, 5065 |
| Bsp19I | CCATGG | 2 cut(s) | 35, 2154 |
| BspANI | GGCC | 4 cut(s) | 1574, 1807, 5435, 6009 |
| BspEI | TCCGGA | 2 cut(s) | 3015, 3607 |
| BspFNI | CGCG | 1 cut(s) | 5535 |
| BspHI | TCATGA | 5 cut(s) | 1528, 1669, 3235, 4897, 5884 |
| BspLI | GGNNCC | 6 cut(s) | 1318, 2733, 3001, 4104, 5551, 5780 |
| BspMAI | CTGCAG | 2 cut(s) | 2425, 2674 |
| BspMI | ACCTGC | 1 cut(s) | 340 |
| BspQI | GCTCTTC | 1 cut(s) | 1249 |
| BspT104I | TTCGAA | 2 cut(s) | 4405, 6147 |
| BspT107I | GGYRCC | 1 cut(s) | 2999 |
| BspTNI | GGTCTC | 2 cut(s) | 1020, 2930 |
| BsrBI | CCGCTC | 1 cut(s) | 283 |
| BsrDI | GCAATG | 5 cut(s) | 178, 919, 2184, 3930, 5692 |
| BsrFI | RCCGGY | 2 cut(s) | 2365, 6398 |
| BsrGI | TGTACA | 1 cut(s) | 2945 |
| BssAI | RCCGGY | 2 cut(s) | 2365, 6398 |
| BssNAI | GTATAC | 1 cut(s) | 1889 |
| BssSI | CACGAG | 1 cut(s) | 5748 |
| BssT1I | CCWWGG | 8 cut(s) | 35, 932, 1235, 1575, 2154, 3494, 4438, 6376 |
| Bst1107I | GTATAC | 1 cut(s) | 1889 |
| Bst2BI | CACGAG | 1 cut(s) | 5748 |
| Bst2UI | CCWGG | 7 cut(s) | 1785, 2040, 3258, 3822, 4002, 4428, 5203 |
| BstAUI | TGTACA | 1 cut(s) | 2945 |
| BstBAI | YACGTR | 3 cut(s) | 818, 4381, 4385 |
| BstBI | TTCGAA | 2 cut(s) | 4405, 6147 |
| BstDSI | CCRYGG | 3 cut(s) | 35, 655, 2154 |
| BstEII | GGTNACC | 1 cut(s) | 5714 |
| BstFNI | CGCG | 1 cut(s) | 5535 |
| BstH2I | RGCGCY | 1 cut(s) | 1721 |
| BstHHI | GCGC | 3 cut(s) | 1720, 3835, 5535 |
| BstMCI | CGRYCG | 1 cut(s) | 6060 |
| BstNI | CCWGG | 7 cut(s) | 1785, 2040, 3258, 3822, 4002, 4428, 5203 |
| BstNSI | RCATGY | 7 cut(s) | 2890, 4043, 4082, 5170, 6030, 6044, 6050 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 6111 |
| BstPI | GGTNACC | 1 cut(s) | 5714 |
| BstSFI | CTRYAG | 6 cut(s) | 526, 2421, 2670, 3027, 3166, 3561 |
| BstSNI | TACGTA | 2 cut(s) | 4381, 4385 |
| BstUI | CGCG | 1 cut(s) | 5535 |
| BstV2I | GAAGAC | 7 cut(s) | 1416, 1763, 2040, 3570, 4391, 4491, 4760 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 238, 2161 |
| BstZ17I | GTATAC | 1 cut(s) | 1889 |
| BsuI | GTATCC | 3 cut(s) | 2384, 3354, 6083 |
| BsuRI | GGCC | 4 cut(s) | 1574, 1807, 5435, 6009 |
| BtgI | CCRYGG | 3 cut(s) | 35, 655, 2154 |
| BtgZI | GCGATG | 2 cut(s) | 197, 4606 |
| BtrI | CACGTC | 1 cut(s) | 2292 |
| BtsI | GCAGTG | 6 cut(s) | 748, 2341, 2592, 3129, 3969, 6381 |
| BveI | ACCTGC | 1 cut(s) | 340 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1295, 1514, 2909, 5246 |
| CciI | TCATGA | 5 cut(s) | 1528, 1669, 3235, 4897, 5884 |
| CfoI | GCGC | 3 cut(s) | 1720, 3835, 5535 |
| Cfr10I | RCCGGY | 2 cut(s) | 2365, 6398 |
| Cfr13I | GGNCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| CseI | GACGC | 4 cut(s) | 1212, 2217, 4244, 5137 |
| CspAI | ACCGGT | 1 cut(s) | 2365 |
| DraI | TTTAAA | 3 cut(s) | 1159, 5385, 6084 |
| DrdI | GACNNNNNNGTC | 4 cut(s) | 1237, 1490, 1589, 5084 |
| DseDI | GACNNNNNNGTC | 4 cut(s) | 1237, 1490, 1589, 5084 |
| EaeI | YGGCCR | 1 cut(s) | 1805 |
| EciI | GGCGGA | 4 cut(s) | 75, 216, 264, 3373 |
| Eco105I | TACGTA | 2 cut(s) | 4381, 4385 |
| Eco130I | CCWWGG | 8 cut(s) | 35, 932, 1235, 1575, 2154, 3494, 4438, 6376 |
| Eco147I | AGGCCT | 1 cut(s) | 6009 |
| Eco24I | GRGCYC | 1 cut(s) | 3908 |
| Eco31I | GGTCTC | 2 cut(s) | 1020, 2930 |
| Eco32I | GATATC | 1 cut(s) | 2068 |
| Eco47I | GGWCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| Eco47III | AGCGCT | 1 cut(s) | 1719 |
| Eco88I | CYCGRG | 2 cut(s) | 842, 5413 |
| Eco91I | GGTNACC | 1 cut(s) | 5714 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1511 |
| EcoO65I | GGTNACC | 1 cut(s) | 5714 |
| EcoRI | GAATTC | 3 cut(s) | 40, 4126, 4969 |
| EcoRII | CCWGG | 7 cut(s) | 1783, 2038, 3256, 3820, 4000, 4426, 5201 |
| EcoRV | GATATC | 1 cut(s) | 2068 |
| EcoT14I | CCWWGG | 8 cut(s) | 35, 932, 1235, 1575, 2154, 3494, 4438, 6376 |
| EcoT22I | ATGCAT | 1 cut(s) | 5017 |
| EcoT38I | GRGCYC | 1 cut(s) | 3908 |
| ErhI | CCWWGG | 8 cut(s) | 35, 932, 1235, 1575, 2154, 3494, 4438, 6376 |
| Esp3I | CGTCTC | 2 cut(s) | 1785, 6099 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1070, 1102, 1482, 1514, 3237, 3269 |
| FaqI | GGGAC | 5 cut(s) | 2281, 2618, 3329, 4757, 5859 |
| FblI | GTMKAC | 4 cut(s) | 1364, 1888, 4322, 4331 |
| FriOI | GRGCYC | 1 cut(s) | 3908 |
| GlaI | GCGC | 3 cut(s) | 1719, 3834, 5534 |
| GsaI | CCCAGC | 2 cut(s) | 1316, 3820 |
| GsuI | CTGGAG | 6 cut(s) | 269, 642, 3279, 4734, 5242, 6421 |
| HaeII | RGCGCY | 1 cut(s) | 1721 |
| HaeIII | GGCC | 4 cut(s) | 1574, 1807, 5435, 6009 |
| HapII | CCGG | 9 cut(s) | 476, 2366, 3016, 3284, 3608, 4099, 5794, 6140, 6399 |
| HgaI | GACGC | 4 cut(s) | 1212, 2217, 4244, 5137 |
| HhaI | GCGC | 3 cut(s) | 1720, 3835, 5535 |
| Hin6I | GCGC | 3 cut(s) | 1718, 3833, 5533 |
| HinP1I | GCGC | 3 cut(s) | 1718, 3833, 5533 |
| HincII | GTYRAC | 3 cut(s) | 179, 387, 3813 |
| HindII | GTYRAC | 3 cut(s) | 179, 387, 3813 |
| HindIII | AAGCTT | 2 cut(s) | 1518, 3251 |
| HpaI | GTTAAC | 1 cut(s) | 3813 |
| HpaII | CCGG | 9 cut(s) | 476, 2366, 3016, 3284, 3608, 4099, 5794, 6140, 6399 |
| Hpy99I | CGWCG | 2 cut(s) | 544, 1817 |
| HpyCH4IV | ACGT | 8 cut(s) | 181, 817, 1778, 2291, 4325, 4380, 4384, 5216 |
| HpySE526I | ACGT | 8 cut(s) | 181, 817, 1778, 2291, 4325, 4380, 4384, 5216 |
| HspAI | GCGC | 3 cut(s) | 1718, 3833, 5533 |
| Kpn2I | TCCGGA | 2 cut(s) | 3015, 3607 |
| KspAI | GTTAAC | 1 cut(s) | 3813 |
| LguI | GCTCTTC | 1 cut(s) | 1249 |
| LmnI | GCTCC | 8 cut(s) | 82, 288, 1625, 2644, 2731, 5530, 5778, 6192 |
| MaeII | ACGT | 8 cut(s) | 181, 817, 1778, 2291, 4325, 4380, 4384, 5216 |
| MbiI | CCGCTC | 1 cut(s) | 283 |
| MfeI | CAATTG | 1 cut(s) | 2871 |
| MhlI | GDGCHC | 5 cut(s) | 961, 1697, 3600, 3908, 5621 |
| MlsI | TGGCCA | 1 cut(s) | 1807 |
| MluNI | TGGCCA | 1 cut(s) | 1807 |
| MmeI | TCCRAC | 3 cut(s) | 1662, 2482, 6095 |
| Mox20I | TGGCCA | 1 cut(s) | 1807 |
| Mph1103I | ATGCAT | 1 cut(s) | 5017 |
| MroI | TCCGGA | 2 cut(s) | 3015, 3607 |
| MroXI | GAANNNNTTC | 3 cut(s) | 4472, 5260, 5697 |
| MscI | TGGCCA | 1 cut(s) | 1807 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1035, 1674, 1739, 2562, 4044, 4737, 6045 |
| Msp20I | TGGCCA | 1 cut(s) | 1807 |
| MspA1I | CMGCKG | 1 cut(s) | 5033 |
| MspI | CCGG | 9 cut(s) | 476, 2366, 3016, 3284, 3608, 4099, 5794, 6140, 6399 |
| MunI | CAATTG | 1 cut(s) | 2871 |
| Mva1269I | GAATGC | 3 cut(s) | 5069, 5157, 6124 |
| MvaI | CCWGG | 7 cut(s) | 1785, 2040, 3258, 3822, 4002, 4428, 5203 |
| MvnI | CGCG | 1 cut(s) | 5535 |
| NciI | CCSGG | 4 cut(s) | 477, 4100, 5794, 6140 |
| NcoI | CCATGG | 2 cut(s) | 35, 2154 |
| NlaIV | GGNNCC | 6 cut(s) | 1318, 2733, 3001, 4104, 5551, 5780 |
| NmeAIII | GCCGAG | 2 cut(s) | 512, 997 |
| NsiI | ATGCAT | 1 cut(s) | 5017 |
| NspI | RCATGY | 7 cut(s) | 2890, 4043, 4082, 5170, 6030, 6044, 6050 |
| NspV | TTCGAA | 2 cut(s) | 4405, 6147 |
| PaeR7I | CTCGAG | 1 cut(s) | 5413 |
| PagI | TCATGA | 5 cut(s) | 1528, 1669, 3235, 4897, 5884 |
| PceI | AGGCCT | 1 cut(s) | 6009 |
| PciSI | GCTCTTC | 1 cut(s) | 1249 |
| PctI | GAATGC | 3 cut(s) | 5069, 5157, 6124 |
| PdmI | GAANNNNTTC | 3 cut(s) | 4472, 5260, 5697 |
| Pfl23II | CGTACG | 1 cut(s) | 4381 |
| PflFI | GACNNNGTC | 1 cut(s) | 781 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4736 |
| PfoI | TCCNGGA | 1 cut(s) | 3256 |
| PinAI | ACCGGT | 1 cut(s) | 2365 |
| Ple19I | CGATCG | 1 cut(s) | 6060 |
| Ppu21I | YACGTR | 3 cut(s) | 818, 4381, 4385 |
| PpuMI | RGGWCCY | 1 cut(s) | 1511 |
| PshAI | GACNNNNGTC | 1 cut(s) | 6111 |
| PshBI | ATTAAT | 4 cut(s) | 1587, 1950, 2880, 5231 |
| PsiI | TTATAA | 2 cut(s) | 5562, 6371 |
| Psp5II | RGGWCCY | 1 cut(s) | 1511 |
| Psp6I | CCWGG | 7 cut(s) | 1783, 2038, 3256, 3820, 4000, 4426, 5201 |
| PspEI | GGTNACC | 1 cut(s) | 5714 |
| PspFI | CCCAGC | 2 cut(s) | 1312, 3816 |
| PspGI | CCWGG | 7 cut(s) | 1783, 2038, 3256, 3820, 4000, 4426, 5201 |
| PspLI | CGTACG | 1 cut(s) | 4381 |
| PspN4I | GGNNCC | 6 cut(s) | 1318, 2733, 3001, 4104, 5551, 5780 |
| PspPI | GGNCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| PspPPI | RGGWCCY | 1 cut(s) | 1511 |
| PstI | CTGCAG | 2 cut(s) | 2425, 2674 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1295, 1514, 2909, 5246 |
| PsyI | GACNNNGTC | 1 cut(s) | 781 |
| PvuI | CGATCG | 1 cut(s) | 6060 |
| PvuII | CAGCTG | 1 cut(s) | 5033 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1035, 1674, 1739, 2562, 4044, 4737, 6045 |
| SapI | GCTCTTC | 1 cut(s) | 1249 |
| Sau96I | GGNCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| ScaI | AGTACT | 1 cut(s) | 5822 |
| SduI | GDGCHC | 5 cut(s) | 961, 1697, 3600, 3908, 5621 |
| SfcI | CTRYAG | 6 cut(s) | 526, 2421, 2670, 3027, 3166, 3561 |
| Sfr274I | CTCGAG | 1 cut(s) | 5413 |
| SfuI | TTCGAA | 2 cut(s) | 4405, 6147 |
| SinI | GGWCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| SlaI | CTCGAG | 1 cut(s) | 5413 |
| SmiI | ATTTAAAT | 1 cut(s) | 1159 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1035, 1674, 1739, 2562, 4044, 4737, 6045 |
| SmlI | CTYRAG | 5 cut(s) | 3177, 3909, 4565, 5413, 6168 |
| SmoI | CTYRAG | 5 cut(s) | 3177, 3909, 4565, 5413, 6168 |
| SnaBI | TACGTA | 2 cut(s) | 4381, 4385 |
| SpeI | ACTAGT | 1 cut(s) | 5498 |
| SseBI | AGGCCT | 1 cut(s) | 6009 |
| SspI | AATATT | 3 cut(s) | 884, 3295, 5182 |
| StuI | AGGCCT | 1 cut(s) | 6009 |
| StyI | CCWWGG | 8 cut(s) | 35, 932, 1235, 1575, 2154, 3494, 4438, 6376 |
| SwaI | ATTTAAAT | 1 cut(s) | 1159 |
| TaiI | ACGT | 8 cut(s) | 184, 820, 1781, 2294, 4328, 4383, 4387, 5219 |
| TatI | WGTACW | 5 cut(s) | 1655, 2945, 3209, 3273, 5820 |
| TauI | GCSGC | 3 cut(s) | 91, 448, 5191 |
| Tth111I | GACNNNGTC | 1 cut(s) | 781 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4736 |
| VpaK11BI | GGWCC | 5 cut(s) | 473, 500, 1511, 5391, 5624 |
| VspI | ATTAAT | 4 cut(s) | 1587, 1950, 2880, 5231 |
| XbaI | TCTAGA | 2 cut(s) | 578, 2005 |
| XceI | RCATGY | 7 cut(s) | 2890, 4043, 4082, 5170, 6030, 6044, 6050 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 5443 |
| XhoI | CTCGAG | 1 cut(s) | 5413 |
| XmaJI | CCTAGG | 3 cut(s) | 932, 1235, 3494 |
| XmiI | GTMKAC | 4 cut(s) | 1364, 1888, 4322, 4331 |
| XmnI | GAANNNNTTC | 3 cut(s) | 4472, 5260, 5697 |
| ZrmI | AGTACT | 1 cut(s) | 5822 |
| Zsp2I | ATGCAT | 1 cut(s) | 5017 |