Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

12295730 .. 12297549

Gene Structure 1820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTAATCAGCTTATTAGGAATTCGAAGAAGCGAACTCGCATGTTGGCTAGTGAAAGAGTTCGATGGAGCTTGCACACGGCCAGACTGCGGTTACTGTCAGTTTTTTACAAGATTTGGGAAGTGCATTAAGGATGATGGAAAATGTCCCTATATCCATGACCCCTCTAAAGTTGCAGTCTGCACAAAGTTTCTGAAGGGTTTATGTTCCAATCCCAACTGCAAATTGTCCCATAAGGTTTACCATGTGATAGGACTTCACGTGATCTACAACAGAACTTTGTACATCTTCTTGGACATTTTATCATTTTCTTTTTATTTCACTGTTTATATTTCATCTTCATGCAGGTCATTCTTGAGGTACCGTTTGGTACGTGGGACGCGACGGAACGCAGTGGGACGAGGCGTTCCGTCCCACGTTTGGTACAAAAATGCCCTTCATCTTTTTCAATATTTACACCACCTAAATCACAAAACAAACCTTAAAATTCTATCATCTTCTTTCCATCTTCTCTGCCGCTGCCTTGTTTCTCACAGATCTCTCCAACCCTTGTCCTCATCCTCTCTCATAGCCTCTCTTTTCTCTTCCCCACGGAGTGGAACTCAAAGCTCTGCATCTCCAGGTTCGATCTCTGCATCTCCAGACTATGTGTTCAAGGTGGTACTGATAGGTGACCTTGCGGTGGGCAAGTTTCAGATTCTGGCCAGATATTATCGAAACGAGTTTAGCTTGGACTCCATGGCCACCATCGATGTCAAGTTTCAGACTTGGACCCTCCTCATCAAGCACAAAAACACTCCAAGGCGATTAGCGCAAGGCCGTACTGCAGTTTCTCGTTCAGGCCAAGATTGTCAAGAAGGATTAGATCAAGATTCATGGGTTCTGAGGACATGGAGTCGTATTCGAGTTTGTTACCGTTGTATTAAGTTTGCTACTACCTCCCAAAACCTCGTGGCTTGTTTGGATGTTCTGGGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

37.05

Weight (kDa)

9.69

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	336
Acc65I	GGTACC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccII	CGCG	1 cut(s)	382
AciI	CCGC	3 cut(s)	90, 517, 680
AcoI	YGGCCR	3 cut(s)	80, 702, 741
AcsI	RAATTY	2 cut(s)	21, 486
AcuI	CTGAAG	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	6 cut(s)	284, 362, 372, 425, 663, 823
AfiI	CCNNNNNNNGG	4 cut(s)	89, 420, 596, 682
AgsI	TTSAA	2 cut(s)	449, 655
AhdI	GACNNNNNGTC	1 cut(s)	894
AjnI	CCWGG	1 cut(s)	619
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	4 cut(s)	12, 71, 609, 729
AluI	AGCT	4 cut(s)	12, 71, 609, 729
AlwNI	CAGNNNCTG	1 cut(s)	700
AoxI	GGCC	5 cut(s)	80, 702, 741, 817, 841
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	2 cut(s)	21, 486
Asp700I	GAANNNNTTC	1 cut(s)	59
Asp718I	GGTACC	1 cut(s)	360
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	1 cut(s)	771
AsuHPI	GGTGA	1 cut(s)	683
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	771
BalI	TGGCCA	2 cut(s)	704, 743
BanI	GGYRCC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	950
BbrPI	CACGTG	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	4 cut(s)	59, 131, 513, 755
BceAI	ACGGC	2 cut(s)	95, 804
BciT130I	CCWGG	1 cut(s)	621
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	825
BfuAI	ACCTGC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	2 cut(s)	517, 520
BlsI	GCNGC	2 cut(s)	518, 521
Bme1390I	CCNGG	1 cut(s)	621
Bme18I	GGWCC	1 cut(s)	771
BmeRI	GACNNNNNGTC	1 cut(s)	894
BmgT120I	GGNCC	1 cut(s)	771
BmiI	GGNNCC	2 cut(s)	362, 773
BmrFI	CCNGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	623, 644
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
BpmI	CTGGAG	2 cut(s)	603, 624
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	750
BsaAI	YACGTR	2 cut(s)	262, 374
BsaJI	CCNNGG	3 cut(s)	590, 738, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 420, 596, 682
BseBI	CCWGG	1 cut(s)	621
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	3 cut(s)	590, 738, 800
BseGI	GGATG	3 cut(s)	139, 557, 970
BseLI	CCNNNNNNNGG	4 cut(s)	89, 420, 596, 682
BseMII	CTCAG	1 cut(s)	875
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	5 cut(s)	82, 704, 743, 819, 843
BshNI	GGYRCC	1 cut(s)	360
BshVI	ATCGAT	1 cut(s)	750
BslFI	GGGAC	5 cut(s)	132, 214, 391, 397, 411
BslI	CCNNNNNNNGG	4 cut(s)	89, 420, 596, 682
BsmFI	GGGAC	5 cut(s)	132, 214, 391, 397, 411
BsnI	GGCC	5 cut(s)	82, 704, 743, 819, 843
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	264, 536, 627, 865
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	3 cut(s)	90, 517, 680
BspANI	GGCC	5 cut(s)	82, 704, 743, 819, 843
BspCNI	CTCAG	1 cut(s)	876
BspDI	ATCGAT	1 cut(s)	750
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	362, 773
BspMAI	CTGCAG	1 cut(s)	829
BspMI	ACCTGC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	590, 738, 800
BssMI	GATC	4 cut(s)	264, 536, 627, 865
BssSI	CACGAG	1 cut(s)	950
BssT1I	CCWWGG	2 cut(s)	738, 800
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	98, 325, 365, 917
Bst6I	CTCTTC	1 cut(s)	589
BstAUI	TGTACA	1 cut(s)	282
BstBAI	YACGTR	2 cut(s)	262, 374
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	884
BstDSI	CCRYGG	2 cut(s)	590, 738
BstEII	GGTNACC	1 cut(s)	671
BstF5I	GGATG	3 cut(s)	139, 557, 970
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	814
BstKTI	GATC	4 cut(s)	267, 539, 630, 868
BstMBI	GATC	4 cut(s)	264, 536, 627, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	811
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	45
BstPI	GGTNACC	1 cut(s)	671
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	506
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
Bsu15I	ATCGAT	1 cut(s)	750
BsuRI	GGCC	5 cut(s)	82, 704, 743, 819, 843
BsuTUI	ATCGAT	1 cut(s)	750
BtgI	CCRYGG	2 cut(s)	590, 738
BtsCI	GGATG	3 cut(s)	139, 557, 970
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	321, 399
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	73
CaiI	CAGNNNCTG	1 cut(s)	700
CfoI	GCGC	1 cut(s)	814
Cfr13I	GGNCC	1 cut(s)	771
ClaI	ATCGAT	1 cut(s)	750
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	6 cut(s)	283, 361, 371, 424, 662, 822
CviAII	CATG	7 cut(s)	42, 158, 245, 342, 739, 876, 891
CviQI	GTAC	6 cut(s)	283, 361, 371, 424, 662, 822
DdeI	CTNAG	1 cut(s)	884
DpnI	GATC	4 cut(s)	266, 538, 629, 867
DpnII	GATC	4 cut(s)	264, 536, 627, 865
DraIII	CACNNNGTG	1 cut(s)	596
DriI	GACNNNNNGTC	1 cut(s)	894
EaeI	YGGCCR	3 cut(s)	80, 702, 741
Eam1104I	CTCTTC	1 cut(s)	589
Eam1105I	GACNNNNNGTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	738, 800
Eco47I	GGWCC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	215
Eco72I	CACGTG	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	671
EcoO65I	GGTNACC	1 cut(s)	671
EcoRI	GAATTC	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	738, 800
ErhI	CCWWGG	2 cut(s)	738, 800
FaeI	CATG	7 cut(s)	45, 161, 248, 345, 742, 879, 894
FaqI	GGGAC	5 cut(s)	132, 214, 391, 397, 411
FatI	CATG	7 cut(s)	41, 157, 244, 341, 738, 875, 890
Fnu4HI	GCNGC	2 cut(s)	517, 520
FokI	GGATG	3 cut(s)	146, 544, 977
Fsp4HI	GCNGC	2 cut(s)	517, 520
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	2 cut(s)	517, 520
GsuI	CTGGAG	2 cut(s)	603, 624
HaeIII	GGCC	5 cut(s)	82, 704, 743, 819, 843
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	1 cut(s)	814
Hin1II	CATG	7 cut(s)	45, 161, 248, 345, 742, 879, 894
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HinfI	GANTC	4 cut(s)	697, 734, 872, 895
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	195, 696, 765, 885
Hpy188III	TCNNGA	4 cut(s)	355, 641, 854, 869
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	387
HpyAV	CCTTC	3 cut(s)	190, 446, 851
HpyCH4III	ACNGT	4 cut(s)	98, 325, 365, 917
HpyCH4IV	ACGT	3 cut(s)	261, 373, 417
HpyCH4V	TGCA	9 cut(s)	75, 126, 176, 183, 222, 345, 614, 635, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	811
HpyF3I	CTNAG	1 cut(s)	884
HpySE526I	ACGT	3 cut(s)	261, 373, 417
Hsp92II	CATG	7 cut(s)	45, 161, 248, 345, 742, 879, 894
HspAI	GCGC	1 cut(s)	812
KpnI	GGTACC	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	264, 536, 627, 865
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	9 cut(s)	96, 331, 606, 633, 654, 686, 718, 825, 956
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	2 cut(s)	623, 644
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	3 cut(s)	261, 373, 417
MaeIII	GTNAC	3 cut(s)	92, 671, 911
MalI	GATC	4 cut(s)	266, 538, 629, 867
MboI	GATC	4 cut(s)	264, 536, 627, 865
MboII	GAAGA	6 cut(s)	39, 280, 330, 489, 500, 576
MflI	RGATCY	1 cut(s)	536
MlsI	TGGCCA	2 cut(s)	704, 743
MluCI	AATT	3 cut(s)	21, 224, 486
MluNI	TGGCCA	2 cut(s)	704, 743
MlyI	GAGTC	2 cut(s)	728, 904
MmeI	TCCRAC	1 cut(s)	568
Mox20I	TGGCCA	2 cut(s)	704, 743
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	2 cut(s)	704, 743
MseI	TTAA	3 cut(s)	129, 483, 924
MslI	CAYNNNNRTG	1 cut(s)	340
Msp20I	TGGCCA	2 cut(s)	704, 743
MspA1I	CMGCKG	1 cut(s)	519
MspR9I	CCNGG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	811
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	4 cut(s)	264, 536, 627, 865
NlaIII	CATG	7 cut(s)	45, 161, 248, 345, 742, 879, 894
NlaIV	GGNNCC	2 cut(s)	362, 773
NmuCI	GTSAC	1 cut(s)	671
NspI	RCATGY	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	697, 872
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	518, 521
PleI	GAGTC	2 cut(s)	728, 903
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
PpsI	GAGTC	2 cut(s)	728, 903
Ppu21I	YACGTR	2 cut(s)	262, 374
Psp6I	CCWGG	1 cut(s)	619
PspCI	CACGTG	1 cut(s)	262
PspEI	GGTNACC	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	2 cut(s)	362, 773
PspPI	GGNCC	1 cut(s)	771
PstI	CTGCAG	1 cut(s)	829
PstNI	CAGNNNCTG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	536
RsaI	GTAC	6 cut(s)	284, 362, 372, 425, 663, 823
RsaNI	GTAC	6 cut(s)	283, 361, 371, 424, 662, 822
RseI	CAYNNNNRTG	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	129, 483, 924
SatI	GCNGC	2 cut(s)	517, 520
Sau3AI	GATC	4 cut(s)	264, 536, 627, 865
Sau96I	GGNCC	1 cut(s)	771
SchI	GAGTC	2 cut(s)	728, 904
ScrFI	CCNGG	1 cut(s)	621
SfaNI	GCATC	2 cut(s)	623, 644
SfcI	CTRYAG	1 cut(s)	825
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	1 cut(s)	771
SmiMI	CAYNNNNRTG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	21, 224, 486
SsiI	CCGC	3 cut(s)	90, 517, 680
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	2 cut(s)	738, 800
TaaI	ACNGT	4 cut(s)	98, 325, 365, 917
TaiI	ACGT	3 cut(s)	264, 376, 420
TaqI	TCGA	6 cut(s)	25, 63, 626, 715, 750, 904
TasI	AATT	3 cut(s)	21, 224, 486
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	697, 872
Tru1I	TTAA	3 cut(s)	129, 483, 924
Tru9I	TTAA	3 cut(s)	129, 483, 924
TscAI	CASTG	2 cut(s)	328, 399
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	4 cut(s)	324, 330, 428, 864
TspGWI	ACGGA	3 cut(s)	399, 400, 607
TspRI	CASTG	2 cut(s)	328, 399
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	771
XapI	RAATTY	2 cut(s)	21, 486
XceI	RCATGY	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.