Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18444731 .. 18445672

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1160200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAATGTAAATGGTTCTGGCCATGACGCAGAAACCTCCTTGGATATTGATGGTGGTATAAAAGTATCTTATCAAGAAGTCATGGTTCATGACATTGGCAATGTGGATGCCATCAGCGAGCAACCTTGTAGACATCAGCTCTCAACATCGCTACAAATTGGTTCCGTGGAAGAACTTATGAAGGCTATATCTTCCGCAGAAGTTAGCATGACTGTTGGTTTATCAATTTCGGGGGAGACCCTTACTGTCTGCTTTGATTATGGTAGAGGCACCACCTGGAACTCTGACAAAGTTAGTACTAATTATGATGAGAATATTATTGTTTCGAATGATGGGAATGTCAATTTTATTGAAAGGCAAGCATTTCCAGATGGTGCCTTTAGACCATTTGTTATTTGTGGCACCAAAAGATCTTCAAAGGTTGCAAGTTCAGTTGGAGATCGTAAGAGTGTTAAATTTAGGATTAAAAACGAGAGAAAATTTAGGACTCCGTTAGACTATTCAAGGGCTTCCAACACTTCTGTAGAGCCTAGAAATATTTCTGCACGTGAAAATTCTGTGTATACAACAGTAAGTTCATCCCTGAAGGATGCTAGTGTAGAAGTTGCTATTTCTGGTGTTGAAAGTTTAGATATTGGCTCAGAACCTGATAATGATGGGGATAGTGTTTCGCGCGGGAACAGCTCACTAGTTGGGATTTATGAGGCTAAGTTATCAGCTAAAAGTGATGTTAACTCTGATCCTGATGAAACTTCATCGAAGTATATAAAGAGGAAAAAAGTATCCACATCTCATTTGGTAAGGACTACATCTCAAACCATTGACGGACCTGCAGAGAAATGTACACCTTATGCAGACGCACCTTGGACTAATGATGATACAACACAAGAAGAAGAGATACTGCTTCTAACATACATTTTCTCTCTACTACTGCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.05

Weight (kDa)

4.85

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccB1I	GGYRCC	3 cut(s)	269, 374, 401
AccI	GTMKAC	2 cut(s)	130, 563
AccII	CGCG	2 cut(s)	673, 675
AciI	CCGC	2 cut(s)	195, 675
AclWI	GGATC	1 cut(s)	734
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	3 cut(s)	455, 479, 553
AcuI	CTGAAG	1 cut(s)	605
AcvI	CACGTG	1 cut(s)	548
AfaI	GTAC	2 cut(s)	298, 844
AgsI	TTSAA	4 cut(s)	353, 417, 504, 623
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	139, 684, 719
AluI	AGCT	3 cut(s)	139, 684, 719
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	3 cut(s)	455, 479, 553
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	827
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	827
BalI	TGGCCA	1 cut(s)	21
BanI	GGYRCC	3 cut(s)	269, 374, 401
BarI	GAAGNNNNNNTAC	2 cut(s)	882, 914
BbrPI	CACGTG	1 cut(s)	548
BccI	CCATC	5 cut(s)	44, 119, 326, 365, 650
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	793
BcoDI	GTCTC	1 cut(s)	230
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	3 cut(s)	531, 594, 689
BfmI	CTRYAG	2 cut(s)	522, 831
BfuAI	ACCTGC	1 cut(s)	838
BfuI	GTATCC	1 cut(s)	793
BglII	AGATCT	1 cut(s)	410
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	827
BmgT120I	GGNCC	1 cut(s)	827
BmiI	GGNNCC	4 cut(s)	163, 271, 376, 403
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	2 cut(s)	97, 580
Bpu14I	TTCGAA	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	39, 165, 863
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	39, 165, 863
BseGI	GGATG	3 cut(s)	112, 578, 595
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	654
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	2 cut(s)	673, 675
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	3 cut(s)	269, 374, 401
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	842
Bsp143I	GATC	3 cut(s)	410, 439, 739
BspACI	CCGC	2 cut(s)	195, 675
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	653
BspFNI	CGCG	2 cut(s)	673, 675
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	4 cut(s)	163, 271, 376, 403
BspMAI	CTGCAG	1 cut(s)	835
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	1 cut(s)	734
BspT104I	TTCGAA	1 cut(s)	326
BspT107I	GGYRCC	3 cut(s)	269, 374, 401
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	106
BsrGI	TGTACA	1 cut(s)	842
BssECI	CCNNGG	3 cut(s)	39, 165, 863
BssMI	GATC	3 cut(s)	410, 439, 739
BssNAI	GTATAC	1 cut(s)	564
BssT1I	CCWWGG	2 cut(s)	39, 863
Bst1107I	GTATAC	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	3 cut(s)	214, 247, 571
Bst6I	CTCTTC	1 cut(s)	888
BstAUI	TGTACA	1 cut(s)	842
BstBAI	YACGTR	1 cut(s)	548
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	119, 360
BstDEI	CTNAG	2 cut(s)	640, 708
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	112, 578, 595
BstFNI	CGCG	2 cut(s)	673, 675
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	3 cut(s)	413, 442, 742
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	410, 439, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	681
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	2 cut(s)	522, 831
BstUI	CGCG	2 cut(s)	673, 675
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	3 cut(s)	112, 578, 595
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	2 cut(s)	119, 360
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	88
CfoI	GCGC	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	827
CseI	GACGC	2 cut(s)	35, 866
Csp6I	GTAC	2 cut(s)	297, 843
CviAII	CATG	4 cut(s)	23, 82, 89, 208
CviJI	RGCY	9 cut(s)	21, 139, 185, 509, 529, 639, 684, 707, 719
CviKI_1	RGCY	9 cut(s)	21, 139, 185, 509, 529, 639, 684, 707, 719
CviQI	GTAC	2 cut(s)	297, 843
DdeI	CTNAG	2 cut(s)	640, 708
DpnI	GATC	3 cut(s)	412, 441, 741
DpnII	GATC	3 cut(s)	410, 439, 739
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Eco130I	CCWWGG	2 cut(s)	39, 863
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	39, 863
ErhI	CCWWGG	2 cut(s)	39, 863
FaeI	CATG	4 cut(s)	26, 85, 92, 211
FatI	CATG	4 cut(s)	22, 81, 88, 207
FauI	CCCGC	1 cut(s)	668
FblI	GTMKAC	2 cut(s)	130, 563
FokI	GGATG	3 cut(s)	119, 565, 602
FspBI	CTAG	3 cut(s)	531, 594, 689
GlaI	GCGC	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	21
HgaI	GACGC	2 cut(s)	35, 866
HhaI	GCGC	1 cut(s)	675
Hin1II	CATG	4 cut(s)	26, 85, 92, 211
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	1 cut(s)	487
HpaI	GTTAAC	1 cut(s)	733
Hpy166II	GTNNAC	4 cut(s)	131, 564, 733, 845
Hpy188I	TCNGA	3 cut(s)	286, 643, 739
Hpy188III	TCNNGA	4 cut(s)	74, 89, 368, 743
Hpy8I	GTNNAC	4 cut(s)	131, 564, 733, 845
HpyAV	CCTTC	2 cut(s)	175, 580
HpyCH4III	ACNGT	3 cut(s)	214, 247, 571
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	4 cut(s)	425, 545, 833, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	681
HpyF3I	CTNAG	2 cut(s)	640, 708
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	4 cut(s)	26, 85, 92, 211
HspAI	GCGC	1 cut(s)	673
KspAI	GTTAAC	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	410, 439, 739
LpnPI	CCDG	9 cut(s)	3, 262, 289, 381, 596, 600, 660, 756, 843
LweI	GCATC	2 cut(s)	97, 580
MaeI	CTAG	3 cut(s)	531, 594, 689
MaeII	ACGT	1 cut(s)	547
MalI	GATC	3 cut(s)	412, 441, 741
MboI	GATC	3 cut(s)	410, 439, 739
MboII	GAAGA	5 cut(s)	182, 183, 405, 902, 905
MflI	RGATCY	1 cut(s)	410
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	8 cut(s)	156, 225, 301, 343, 455, 479, 553, 936
MluNI	TGGCCA	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	2 cut(s)	415, 537
MnlI	CCTC	4 cut(s)	46, 260, 697, 765
Mox20I	TGGCCA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	538
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	4 cut(s)	453, 465, 732, 940
Msp20I	TGGCCA	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	2 cut(s)	673, 675
MwoI	GCNNNNNNNGC	1 cut(s)	681
NdeII	GATC	3 cut(s)	410, 439, 739
NlaIII	CATG	4 cut(s)	26, 85, 92, 211
NlaIV	GGNNCC	4 cut(s)	163, 271, 376, 403
NspV	TTCGAA	1 cut(s)	326
PagI	TCATGA	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	481
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	275
PspCI	CACGTG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	4 cut(s)	163, 271, 376, 403
PspPI	GGNCC	1 cut(s)	827
PstI	CTGCAG	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	410
RsaI	GTAC	2 cut(s)	298, 844
RsaNI	GTAC	2 cut(s)	297, 843
SaqAI	TTAA	4 cut(s)	453, 465, 732, 940
Sau3AI	GATC	3 cut(s)	410, 439, 739
Sau96I	GGNCC	1 cut(s)	827
ScaI	AGTACT	1 cut(s)	298
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	277
SfaNI	GCATC	2 cut(s)	97, 580
SfcI	CTRYAG	2 cut(s)	522, 831
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	1 cut(s)	827
SpeI	ACTAGT	1 cut(s)	688
Sse9I	AATT	8 cut(s)	156, 225, 301, 343, 455, 479, 553, 936
SsiI	CCGC	2 cut(s)	195, 675
SspI	AATATT	2 cut(s)	316, 538
SspMI	CTAG	3 cut(s)	531, 594, 689
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	2 cut(s)	39, 863
TaaI	ACNGT	3 cut(s)	214, 247, 571
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	2 cut(s)	326, 758
TasI	AATT	8 cut(s)	156, 225, 301, 343, 455, 479, 553, 936
TatI	WGTACW	2 cut(s)	296, 842
Tru1I	TTAA	4 cut(s)	453, 465, 732, 940
Tru9I	TTAA	4 cut(s)	453, 465, 732, 940
TspDTI	ATGAA	6 cut(s)	17, 77, 194, 567, 744, 762
TspGWI	ACGGA	3 cut(s)	154, 480, 840
VpaK11BI	GGWCC	1 cut(s)	827
XapI	RAATTY	3 cut(s)	455, 479, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XmiI	GTMKAC	2 cut(s)	130, 563
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	3 cut(s)	531, 594, 689
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.