Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000192.1

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Forward (+)

64816 .. 73242

Gene Structure 8427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000192.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6108 bp

atggacctccctcagtaccttcaccaccatccaaggtacgctccttcctcctcctctgaccctaatttcccaaactaccctcaccgcgccaccaaccactaccaccaccgccacactccgcctcctcctcccccaacccagcccccacagctccgctcacaatccccctcctccttcaaatccctaccccctcctccgccgccaccacatccccaaaggaccaccttctccccccaccccatcgattctgatcattccagaaccttctcccctcgcaccactcaccgcccgccgcctctcgattccgaccggccacgtcatcgcctctacctcgagtccggtccggattaccgggaccgatccaggaactattcgccgcgcgattatgaccgcgaattgcataaaccctataggcgcgatccggacggcggcggcgctaggtttagatcggagtacgaagaacaacgggatcgtcgagttgatgacggttatcgccgtcgctcgtgcaatcacgaaacgacgacgtttcgcgaagtggagttccaggattcgggttcgggttgctacgacgagagcgcgtatgaggagctgttgaagagtgggaggagatatgaggcgtatgagattcaacggtggggtcttgagagggcccaatcggaggaggatttgtacgatcctttcgaattggatgagcacgatgaggaggatcggattgtttcggagaagagggattattatggttccgaatcaggaagaagtagtagtactagtagatggaagcagatacaaaagaagagtgctttgcttaggcttcaaacgccgaaaacccgggacaggaattactctgcttattatgatagttccggctccggtggatcgttcagagggaaagaacagtatgagtatgagtattcaggtcatgggaggaaggatgcagtagaagaagagaggcgtggtggtggaggagaagaagagagaggccaacaacagagaggtgggagtagtcctctggaccttgatgtttcgtttaagtcgaattcgctggtagccaagccggttagaactagggatgagaagagaggttcactttcggatatggattgttcagagtcaccacctgctaagccttgtgaggatgttgtaaatttggacagtttggcacttgtttcgaataaggcatcgagtcctggcaaggaggccatgaagttgaaaggacaagttactacttctggcatgaattcacagccttgttctgttgtgactgatgatgcgtttgtaaagagtgaagtggaaacagcacccaagggcaagattttacataaagatggcaaggatgttggttccagtcacaagtcttctcccaatgtttctaagaagacaaaagtagtgaagaaaatagtggccaagaagacagtgaaaaaggtcacaaacccccccacttcacagccacaaagtaagattgatgagccggggacgagtactgttcacagtctatttgcaggcactggcaaaggtgaaacctcttccatttctgatccttgtccaaatgatttgcatgtgttgtctgtagataaggaagtagaaggttctctgccaaatgttctatcagatgaatatggcactgttctcaactcttgtagtaagaatgttgggaacaactcaagtgcaaatttgggctctttgagtcctgcagagattaatactgatcagaagcaccctctgaatgtagatactccggtcaagggcttgcttaccatttcaaattttaacagcaatgcaactgattcaatcaaggtagctactcgtcctgaaactggcggtgttgtggatgtcagcaaatcgatctgtcagagtggaaacattttattggttgataaagttgtacaaaaagaatcatcacaggccatgttggctgtagaaggcaatttgagccctggttttttaaattcagataagatgcatgaactcacgaatgtaaagggttctgaacatggggcggctgaaaccttggagaaactgtcacatcaggaaatcattgttcctgatgttggcactgtggatgcagttagcgaacaaccttgtagatatcagctccccacatcacttcaaaatggtggtgttgtggaagaacttcctaaggctatatcttcagcagaaaataatatggcggttggtttatcgagttcaggggagaccaaagctgtccgctccaagattggtagacgtacaaggtgggattctgatgaagtttatgttaagaaagataagagcattacagtttccaatggtgggaatactaattcttttggcaagcagtcatcacctgattgtgactctagatcttttgaaatttgtgccacagaaagatctccaaatataccaaaatcagttggagatactcatagtgttacacctatgattcaaaagaagagaaaagttaaaacgcagttagacttttcaaggatatccgacacttgtgtagaccctgtaaatgtttctccccgcaaagatgcaccggatacaacagtaagttccttcctgaaggatcctagtcatgcagaagtttctgtttctggtgttcaaaagttagatatgggatcacagcctggtaatgattgggtcagcgttctgaatgggaaaagttcagtaaatgggttttctgacactaagctttcagctagaattgatgctaactatgatacaaatgagacttcacccgagtattcaaagaggagaaaagtgtctggcactcatctggtattgacttcagctcaaaccaatggaggacctgcaaataaatctacatcttatatacaggaatcttcaactcataatgatgttccaacatatcaagcggacaaaggtgcttcttctagcataggttctcagtgtgctacttctaatttaattccatctcctgaggaaatcaatgtctatcttgaggacattatggctgcagtatcatctgatactgtagctgcagctagggactcctttactaatgatgatatggagattaggcaccaaggtattgactcttcttcagtttctgaagggtcaggtattccacatatgcaaatcccttgtcctttacaatcacagaatgaggataaagaggatggtactgaagttatggttgtaaataatcatcaccttgacattttggatatagatggtagtcatgaaaaagactttgatgtttgtgcaacaaatgagcacattatggttcaaggtgagactgctccatgtacaattcattcagagcttcagcctgctgatttgggtattaattctttcagtacaaatatagaatcagattacctctgtgttaaggataaactgccttttgtgccaagttgcctgctttcaattgctaatggcaatgaagtaacttctaccaactctattgatgaaggcatgaagtctgtgtctgatacgctgtcagatacaggtactccagaaacttcaactagtatcactgacgtgcatatgctgattagtaatccttcggttattaaaagttttgacgaaaaagtttgtgcggatgaccagaaatttgaggtgaagtctgaggttgcatccgctgggaatttattctcagagaccaaaactaatttaacattagataatgtaactgaaggtcaccaatcagtctcagagaaggcagtacctttgaaattgcaggattccaaaaagacatctcatggtctgcatctcataagtgctgaatctgcattgaagaaccagctgggtcaagctactcataggattgttccaggtcgtccattttctgcctttactacctcacagaaggctacctcttcaacacatatatcaaagcctcggacttggcatcgaaatgctaattcatctgtatctcctcttcctgtgagtactcttccacctcaaaggcagttgccacaaagaaatggaaaacttgaaagtaattcttatgttcgtaaaggtaacacccttgttagaagacgtgctacaattgctgctgtaccacaaagctctcaaggtctcagttcatctgttcatcagttgaacttttcaggtatagatggattgaagaagaatgcaggatccgacagtagggttgacattaaaaaccctccaagaacaggaggactcaatgcttcttcagataggcccccagccccactacccagtggagtcaaaatgtctgcatctgctgccgtctcttccgggattcctacatcatccccactagctgagcctcttcttagtgatatctctggaactaaatcagatcctatgaattgttcggaaacgaaagatgcagaaggatcagtcaaggactcgctggcaacttctgatactcaggaataccatagtggtccagtcaacaatctacatgatgggaatgtggcatcttcaaatatgaagaaggttatatatgtaaagcgaaaattaaatcagttggttgcatcatcttcaaatccgtcagacctttctgtccacaatgctgataagaaccaaccctcagatggctactacaagaggcgcaaacatcagctaattaggtcttctttggaaagtaatggcaaagatactgttctcctgcccactgacaatctaaactcaggggagcaaaaggctcgtaaggttatccccagtagaacatttaacaagaagcgatcacttaaggctgttgcgaggatgagtaaaaagaattccttggtctggacaccaagtggttcacagtcatcaaataataatggtagttcatatgaccatcagaaggttctgccgcagctgtttccgtggaaaagagcaagatactggagaactgtcatgcaaagtcaggcttccaatttcaattatagttcctcatcaacaatcagtaaaaagttgctgctctcaaggatgagggatactgtatacactaggtcaacccatggattttcacttagaaagtacaaggtattaagtgttggtggatctagtttaaaatggtcaaaatccattgaaagtcgctcaaagaaagttaatgaggaagctacacgggctgttgctgaagtagagaagaagaaaagagaacacaatggtgctgcctgcactagttctggttctaaaatcagaaactcaccgggaaaacgaatattccgcattggctctgttcgttacaaaatggatccttcaaggcggacacttaagaggatttcagatgacgaatcctcaaagtctgttgtgctgaatccagaaacggatgccaagagatcatatgttccaaggagattggtgattgggaatgacgaatatgtgcggattggaaatggtaatcagcttattagagatccaaagaaacgaactcgcatattggcaagtgaaagagttagatggagtttgcacactgccagacagcggttggcaaaaaaacggaaatactgccagtttttcacacgatttgggaagtgtaacaaggatgatggaaaatgtccctatattcatgactcctccaaaattgcagtctgcacaaagtatctgaacggtttatgttccaaccccaactgcagattaacccacaaggtcattccagaaagaatgccagactgttctttctttctgcaaggtttatgcaccaataaaaattgttcttacagacatgtaaatgtaaatccgaaggcatctacttgtgaaggatttcttaaaggttattgtgcggacggaaatgagtgccggaagaagcacagctatgtctgccagacttttgaagaaacaggaacgtgtcctcaagggcccaaatgcaagcttcaccaccccaaaaagcgtatgaagggaaagataaagaaacgatcaagagaacatagaaatgtttggggacgttactttgtttccaaggatgttggtgtttctgagcccataacagcgtctgcaaagcaccgtgcacaaaatggtgatgacataattggtaatgatttcgttagcatcaatgttagtgatgaggaggctggagaaagtaacaatccacctgagcaaaccacattttatgacagtgatccctctgaattagacttggatgatcttgatgaactaattaaaccggttcgtttgttgaataagatgaagacaaacatttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

2035

Amino Acids

224.21

Weight (kDa)

8.89

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1126
AasI	GACNNNNNNGTC	1 cut(s)	4478
Acc36I	ACCTGC	2 cut(s)	1126, 2797
AccB1I	GGYRCC	1 cut(s)	3021
AccBSI	CCGCTC	2 cut(s)	156, 2208
AccI	GTMKAC	3 cut(s)	2221, 2481, 4905
AccII	CGCG	7 cut(s)	87, 379, 381, 393, 417, 531, 578
AccIII	TCCGGA	2 cut(s)	343, 421
AcoI	YGGCCR	2 cut(s)	311, 1401
AdeI	CACNNNGTG	1 cut(s)	4718
AflII	CTTAAG	2 cut(s)	4667, 5177
AflIII	ACRYGT	2 cut(s)	5629, 5750
AgeI	ACCGGT	1 cut(s)	6067
AhlI	ACTAGT	3 cut(s)	767, 3470, 5084
AjiI	CACGTC	3 cut(s)	317, 3484, 3986
AjnI	CCWGG	6 cut(s)	362, 543, 1186, 1933, 2605, 3775
AleI	CACNNNNGTG	2 cut(s)	3482, 5070
Alw21I	GWGCWC	3 cut(s)	696, 3219, 5914
Alw26I	GTCTC	7 cut(s)	2186, 2702, 3230, 3596, 3658, 4028, 4207
Alw44I	GTGCAC	1 cut(s)	5910
AlwNI	CAGNNNCTG	3 cut(s)	1505, 3050, 5897
Ama87I	CYCGRG	3 cut(s)	332, 828, 2717
Aor13HI	TCCGGA	2 cut(s)	343, 421
AoxI	GGCC	8 cut(s)	311, 648, 979, 1197, 1401, 1902, 4151, 5762
ApaI	GGGCCC	2 cut(s)	652, 5766
ApaLI	GTGCAC	1 cut(s)	5910
ApeKI	GCWGC	8 cut(s)	2954, 2978, 2981, 3998, 4196, 4777, 4879, 5075
ArsI	GACNNNNNNTTYG	6 cut(s)	3070, 3102, 3539, 3571, 5478, 5510
AseI	ATTAAT	2 cut(s)	1698, 3288
AsiGI	ACCGGT	1 cut(s)	6067
Asp700I	GAANNNNTTC	3 cut(s)	2130, 3593, 5667
AspLEI	GCGC	6 cut(s)	89, 381, 417, 437, 578, 4530
AsuC2I	CCSGG	6 cut(s)	353, 829, 830, 1470, 4210, 5115
AsuII	TTCGAA	2 cut(s)	681, 1169
AvaI	CYCGRG	3 cut(s)	332, 828, 2717
AvaII	GGWCC	7 cut(s)	4, 219, 341, 355, 1012, 2786, 4361
AxyI	CCTNAGG	2 cut(s)	2136, 2919
BaeGI	GKGCMC	3 cut(s)	652, 5766, 5914
BaeI	ACNNNNGTAYC	6 cut(s)	1722, 1755, 2511, 2544, 3114, 3147
BalI	TGGCCA	1 cut(s)	1403
BamHI	GGATCC	3 cut(s)	2545, 4085, 5158
BanI	GGYRCC	1 cut(s)	3021
BanII	GRGCYC	5 cut(s)	652, 1679, 1934, 5766, 5886
BarI	GAAGNNNNNNTAC	8 cut(s)	748, 780, 3022, 3054, 3867, 3899, 3973, 4005
BauI	CACGAG	1 cut(s)	502
BbsI	GAAGAC	6 cut(s)	1347, 1382, 1415, 3988, 4542, 6098
Bbv12I	GWGCWC	3 cut(s)	696, 3219, 5914
BbvI	GCAGC	8 cut(s)	2941, 2965, 2993, 3985, 4183, 4789, 4866, 5062
BceAI	ACGGC	3 cut(s)	442, 480, 4184
BcgI	CGANNNNNNTGC	4 cut(s)	1149, 1183, 4604, 4638
BciT130I	CCWGG	6 cut(s)	364, 545, 1188, 1935, 2607, 3777
BciVI	GTATCC	2 cut(s)	2512, 4891
BclI	TGATCA	2 cut(s)	250, 1705
BcnI	CCSGG	6 cut(s)	353, 829, 830, 1470, 4210, 5115
BcoDI	GTCTC	7 cut(s)	2186, 2702, 3230, 3596, 3658, 4028, 4207
BcuI	ACTAGT	3 cut(s)	767, 3470, 5084
BfmI	CTRYAG	8 cut(s)	409, 1566, 1689, 1914, 2955, 2973, 2979, 5536
BfoI	RGCGCY	1 cut(s)	438
BfrI	CTTAAG	2 cut(s)	4667, 5177
BfuAI	ACCTGC	2 cut(s)	1126, 2797
BfuI	GTATCC	2 cut(s)	2512, 4891
BglI	GCCNNNNNGGC	1 cut(s)	1910
BglII	AGATCT	2 cut(s)	2339, 2366
BlpI	GCTNAGC	2 cut(s)	1122, 4236
BmcAI	AGTACT	3 cut(s)	766, 1480, 3895
Bme18I	GGWCC	7 cut(s)	4, 219, 341, 355, 1012, 2786, 4361
BmeT110I	CYCGRG	3 cut(s)	332, 828, 2717
BmgBI	CACGTC	3 cut(s)	317, 3484, 3986
BmrI	ACTGGG	2 cut(s)	4164, 4632
BmuI	ACTGGG	2 cut(s)	4164, 4632
BpiI	GAAGAC	6 cut(s)	1347, 1382, 1415, 3988, 4542, 6098
BplI	GAGNNNNNCTC	2 cut(s)	991, 1023
BpmI	CTGGAG	3 cut(s)	3441, 4828, 5997
Bpu10I	CCTNAGC	2 cut(s)	806, 5997
Bpu1102I	GCTNAGC	2 cut(s)	1122, 4236
Bpu14I	TTCGAA	2 cut(s)	681, 1169
BpuEI	CTTGAG	6 cut(s)	662, 1645, 2960, 4002, 4870, 5742
BpuMI	CCSGG	6 cut(s)	353, 829, 830, 1470, 4210, 5115
Bsa29I	ATCGAT	2 cut(s)	243, 1841
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	3 cut(s)	2186, 3596, 4028
BsaWI	WCCGGW	7 cut(s)	338, 343, 421, 869, 1735, 2515, 6067
BsaXI	ACNNNNNCTCC	8 cut(s)	106, 136, 653, 683, 2003, 2033, 3439, 3469
Bse118I	RCCGGY	3 cut(s)	309, 1054, 6067
Bse1I	ACTGG	8 cut(s)	1344, 1510, 1819, 4170, 4364, 4638, 4811, 5416
Bse21I	CCTNAGG	2 cut(s)	2136, 2919
Bse3DI	GCAATG	2 cut(s)	1780, 3388
Bse8I	GATNNNNATC	1 cut(s)	249
BseAI	TCCGGA	2 cut(s)	343, 421
BseBI	CCWGG	6 cut(s)	364, 545, 1188, 1935, 2607, 3777
BseCI	ATCGAT	2 cut(s)	243, 1841
BseJI	GATNNNNATC	1 cut(s)	249
BseMI	GCAATG	2 cut(s)	1780, 3388
BseNI	ACTGG	8 cut(s)	1344, 1510, 1819, 4170, 4364, 4638, 4811, 5416
BseSI	GKGCMC	3 cut(s)	652, 5766, 5914
BseXI	GCAGC	8 cut(s)	2941, 2965, 2993, 3985, 4183, 4789, 4866, 5062
BseYI	CCCAGC	4 cut(s)	138, 3584, 3748, 4156
BsgI	GTGCAG	2 cut(s)	5065, 5482
Bsh1236I	CGCG	7 cut(s)	87, 379, 381, 393, 417, 531, 578
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	8 cut(s)	313, 650, 981, 1199, 1403, 1904, 4153, 5764
BshNI	GGYRCC	1 cut(s)	3021
BshTI	ACCGGT	1 cut(s)	6067
BshVI	ATCGAT	2 cut(s)	243, 1841
BsiEI	CGRYCG	1 cut(s)	310
BsiHKAI	GWGCWC	3 cut(s)	696, 3219, 5914
BsiHKCI	CYCGRG	3 cut(s)	332, 828, 2717
BslFI	GGGAC	6 cut(s)	368, 845, 1486, 3002, 5448, 5859
BsmAI	GTCTC	7 cut(s)	2186, 2702, 3230, 3596, 3658, 4028, 4207
BsmBI	CGTCTC	1 cut(s)	4207
BsmFI	GGGAC	6 cut(s)	368, 845, 1486, 3002, 5448, 5859
BsmI	GAATGC	2 cut(s)	4084, 5574
BsnI	GGCC	8 cut(s)	313, 650, 981, 1199, 1403, 1904, 4153, 5764
Bso31I	GGTCTC	3 cut(s)	2186, 3596, 4028
BsoBI	CYCGRG	3 cut(s)	332, 828, 2717
Bsp119I	TTCGAA	2 cut(s)	681, 1169
Bsp120I	GGGCCC	2 cut(s)	648, 5762
Bsp1286I	GDGCHC	8 cut(s)	652, 696, 1679, 1934, 3219, 5766, 5886, 5914
Bsp13I	TCCGGA	2 cut(s)	343, 421
Bsp1407I	TGTACA	2 cut(s)	1882, 3248
Bsp1720I	GCTNAGC	2 cut(s)	1122, 4236
Bsp19I	CCATGG	1 cut(s)	4921
Bsp68I	TCGCGA	1 cut(s)	531
BspANI	GGCC	8 cut(s)	313, 650, 981, 1199, 1403, 1904, 4153, 5764
BspDI	ATCGAT	2 cut(s)	243, 1841
BspEI	TCCGGA	2 cut(s)	343, 421
BspFNI	CGCG	7 cut(s)	87, 379, 381, 393, 417, 531, 578
BspHI	TCATGA	2 cut(s)	3181, 5473
BspMAI	CTGCAG	4 cut(s)	1693, 2959, 2983, 5540
BspMI	ACCTGC	2 cut(s)	1126, 2797
BspT104I	TTCGAA	2 cut(s)	681, 1169
BspT107I	GGYRCC	1 cut(s)	3021
BspTI	CTTAAG	2 cut(s)	4667, 5177
BspTNI	GGTCTC	3 cut(s)	2186, 3596, 4028
BsrBI	CCGCTC	2 cut(s)	156, 2208
BsrDI	GCAATG	2 cut(s)	1780, 3388
BsrFI	RCCGGY	3 cut(s)	309, 1054, 6067
BsrGI	TGTACA	2 cut(s)	1882, 3248
BsrI	ACTGG	8 cut(s)	1344, 1510, 1819, 4170, 4364, 4638, 4811, 5416
BssAI	RCCGGY	3 cut(s)	309, 1054, 6067
BssNAI	GTATAC	1 cut(s)	4906
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	8 cut(s)	32, 1302, 2007, 3025, 4701, 4921, 5255, 5862
Bst1107I	GTATAC	1 cut(s)	4906
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	6 cut(s)	364, 545, 1188, 1935, 2607, 3777
BstAFI	CTTAAG	2 cut(s)	4667, 5177
BstAPI	GCANNNNNTGC	1 cut(s)	4196
BstAUI	TGTACA	2 cut(s)	1882, 3248
BstBI	TTCGAA	2 cut(s)	681, 1169
BstC8I	GCNNGC	9 cut(s)	290, 1501, 1748, 2312, 3273, 3362, 4329, 5080, 5774
BstDSI	CCRYGG	2 cut(s)	4787, 4921
BstEII	GGTNACC	1 cut(s)	3641
BstFNI	CGCG	7 cut(s)	87, 379, 381, 393, 417, 531, 578
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	6 cut(s)	89, 381, 417, 437, 578, 4530
BstMAI	GTCTC	7 cut(s)	2186, 2702, 3230, 3596, 3658, 4028, 4207
BstMCI	CGRYCG	1 cut(s)	310
BstNI	CCWGG	6 cut(s)	364, 545, 1188, 1935, 2607, 3777
BstNSI	RCATGY	2 cut(s)	1559, 5633
BstPI	GGTNACC	1 cut(s)	3641
BstSFI	CTRYAG	8 cut(s)	409, 1566, 1689, 1914, 2955, 2973, 2979, 5536
BstSLI	GKGCMC	3 cut(s)	652, 5766, 5914
BstUI	CGCG	7 cut(s)	87, 379, 381, 393, 417, 531, 578
BstV1I	GCAGC	8 cut(s)	2941, 2965, 2993, 3985, 4183, 4789, 4866, 5062
BstV2I	GAAGAC	6 cut(s)	1347, 1382, 1415, 3988, 4542, 6098
BstX2I	RGATCY	8 cut(s)	2339, 2366, 2545, 4085, 4273, 4964, 5158, 5320
BstYI	RGATCY	8 cut(s)	2339, 2366, 2545, 4085, 4273, 4964, 5158, 5320
BstZ17I	GTATAC	1 cut(s)	4906
Bsu15I	ATCGAT	2 cut(s)	243, 1841
Bsu36I	CCTNAGG	2 cut(s)	2136, 2919
BsuI	GTATCC	2 cut(s)	2512, 4891
BsuRI	GGCC	8 cut(s)	313, 650, 981, 1199, 1403, 1904, 4153, 5764
BsuTUI	ATCGAT	2 cut(s)	243, 1841
BtgI	CCRYGG	2 cut(s)	4787, 4921
BtgZI	GCGATG	1 cut(s)	305
BtrI	CACGTC	3 cut(s)	317, 3484, 3986
BtsI	GCAGTG	1 cut(s)	5376
BtuMI	TCGCGA	1 cut(s)	531
BveI	ACCTGC	2 cut(s)	1126, 2797
Cac8I	GCNNGC	9 cut(s)	290, 1501, 1748, 2312, 3273, 3362, 4329, 5080, 5774
CaiI	CAGNNNCTG	3 cut(s)	1505, 3050, 5897
CciI	TCATGA	2 cut(s)	3181, 5473
CfoI	GCGC	6 cut(s)	89, 381, 417, 437, 578, 4530
Cfr10I	RCCGGY	3 cut(s)	309, 1054, 6067
Cfr9I	CCCGGG	1 cut(s)	828
ClaI	ATCGAT	2 cut(s)	243, 1841
CpoI	CGGWCCG	1 cut(s)	341
CseI	GACGC	1 cut(s)	5883
CspAI	ACCGGT	1 cut(s)	6067
CspI	CGGWCCG	1 cut(s)	341
DraI	TTTAAA	2 cut(s)	1944, 4974
DraIII	CACNNNGTG	1 cut(s)	4718
DrdI	GACNNNNNNGTC	1 cut(s)	4478
DseDI	GACNNNNNNGTC	1 cut(s)	4478
EaeI	YGGCCR	2 cut(s)	311, 1401
EciI	GGCGGA	3 cut(s)	108, 186, 5185
Eco130I	CCWWGG	8 cut(s)	32, 1302, 2007, 3025, 4701, 4921, 5255, 5862
Eco24I	GRGCYC	5 cut(s)	652, 1679, 1934, 5766, 5886
Eco31I	GGTCTC	3 cut(s)	2186, 3596, 4028
Eco32I	GATATC	3 cut(s)	2087, 2466, 4255
Eco47I	GGWCC	7 cut(s)	4, 219, 341, 355, 1012, 2786, 4361
Eco81I	CCTNAGG	2 cut(s)	2136, 2919
Eco88I	CYCGRG	3 cut(s)	332, 828, 2717
Eco91I	GGTNACC	1 cut(s)	3641
EcoO109I	RGGNCCY	4 cut(s)	648, 2786, 4152, 5762
EcoO65I	GGTNACC	1 cut(s)	3641
EcoRI	GAATTC	3 cut(s)	1036, 1237, 4696
EcoRII	CCWGG	6 cut(s)	362, 543, 1186, 1933, 2605, 3775
EcoRV	GATATC	3 cut(s)	2087, 2466, 4255
EcoT14I	CCWWGG	8 cut(s)	32, 1302, 2007, 3025, 4701, 4921, 5255, 5862
EcoT22I	ATGCAT	1 cut(s)	1962
EcoT38I	GRGCYC	5 cut(s)	652, 1679, 1934, 5766, 5886
ErhI	CCWWGG	8 cut(s)	32, 1302, 2007, 3025, 4701, 4921, 5255, 5862
Esp3I	CGTCTC	1 cut(s)	4207
FalI	AAGNNNNNCTT	8 cut(s)	3934, 3966, 4685, 4717, 4816, 4848, 5655, 5687
FaqI	GGGAC	6 cut(s)	368, 845, 1486, 3002, 5448, 5859
FauI	CCCGC	2 cut(s)	297, 2510
FauNDI	CATATG	4 cut(s)	3072, 3489, 4753, 5248
FbaI	TGATCA	2 cut(s)	250, 1705
FblI	GTMKAC	3 cut(s)	2221, 2481, 4905
FriOI	GRGCYC	5 cut(s)	652, 1679, 1934, 5766, 5886
GlaI	GCGC	6 cut(s)	88, 380, 416, 436, 577, 4529
GsaI	CCCAGC	4 cut(s)	142, 3588, 3752, 4160
GsuI	CTGGAG	3 cut(s)	3441, 4828, 5997
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	8 cut(s)	313, 650, 981, 1199, 1403, 1904, 4153, 5764
HgaI	GACGC	1 cut(s)	5883
HhaI	GCGC	6 cut(s)	89, 381, 417, 437, 578, 4530
Hin6I	GCGC	6 cut(s)	87, 379, 415, 435, 576, 4528
HinP1I	GCGC	6 cut(s)	87, 379, 415, 435, 576, 4528
HincII	GTYRAC	3 cut(s)	4102, 4369, 4917
HindII	GTYRAC	3 cut(s)	4102, 4369, 4917
HindIII	AAGCTT	2 cut(s)	2669, 5774
Hpy99I	CGWCG	5 cut(s)	477, 501, 523, 526, 572
HpyCH4IV	ACGT	7 cut(s)	316, 524, 2224, 3483, 3985, 5750, 5848
HpySE526I	ACGT	7 cut(s)	316, 524, 2224, 3483, 3985, 5750, 5848
HspAI	GCGC	6 cut(s)	87, 379, 415, 435, 576, 4528
Kpn2I	TCCGGA	2 cut(s)	343, 421
Ksp22I	TGATCA	2 cut(s)	250, 1705
LmnI	GCTCC	8 cut(s)	46, 156, 586, 872, 2097, 2213, 3247, 4612
Lsp1109I	GCAGC	8 cut(s)	2941, 2965, 2993, 3985, 4183, 4789, 4866, 5062
MaeII	ACGT	7 cut(s)	316, 524, 2224, 3483, 3985, 5750, 5848
MbiI	CCGCTC	2 cut(s)	156, 2208
MfeI	CAATTG	2 cut(s)	3369, 3993
MflI	RGATCY	8 cut(s)	2339, 2366, 2545, 4085, 4273, 4964, 5158, 5320
MhlI	GDGCHC	8 cut(s)	652, 696, 1679, 1934, 3219, 5766, 5886, 5914
MlsI	TGGCCA	1 cut(s)	1403
MluNI	TGGCCA	1 cut(s)	1403
MmeI	TCCRAC	6 cut(s)	330, 2371, 2493, 2867, 4113, 5550
Mox20I	TGGCCA	1 cut(s)	1403
Mph1103I	ATGCAT	1 cut(s)	1962
MroI	TCCGGA	2 cut(s)	343, 421
MroXI	GAANNNNTTC	3 cut(s)	2130, 3593, 5667
MscI	TGGCCA	1 cut(s)	1403
MslI	CAYNNNNRTG	8 cut(s)	1323, 2835, 3482, 3858, 5070, 5634, 5718, 5835
Msp20I	TGGCCA	1 cut(s)	1403
MspA1I	CMGCKG	4 cut(s)	3584, 3748, 4780, 5389
MspCI	CTTAAG	2 cut(s)	4667, 5177
MunI	CAATTG	2 cut(s)	3369, 3993
Mva1269I	GAATGC	2 cut(s)	4084, 5574
MvaI	CCWGG	6 cut(s)	364, 545, 1188, 1935, 2607, 3777
MvnI	CGCG	7 cut(s)	87, 379, 381, 393, 417, 531, 578
NciI	CCSGG	6 cut(s)	353, 829, 830, 1470, 4210, 5115
NcoI	CCATGG	1 cut(s)	4921
NdeI	CATATG	4 cut(s)	3072, 3489, 4753, 5248
NmuCI	GTSAC	7 cut(s)	1110, 1258, 1346, 1423, 2019, 2330, 3641
NruI	TCGCGA	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	1962
NspI	RCATGY	2 cut(s)	1559, 5633
NspV	TTCGAA	2 cut(s)	681, 1169
OliI	CACNNNNGTG	2 cut(s)	3482, 5070
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	2 cut(s)	3181, 5473
PaqCI	CACCTGC	1 cut(s)	1126
PciI	ACATGT	1 cut(s)	5629
PcsI	WCGNNNNNNNCGW	3 cut(s)	472, 678, 1031
PctI	GAATGC	2 cut(s)	4084, 5574
PdmI	GAANNNNTTC	3 cut(s)	2130, 3593, 5667
PfoI	TCCNGGA	3 cut(s)	362, 543, 4208
PinAI	ACCGGT	1 cut(s)	6067
PpuMI	RGGWCCY	1 cut(s)	2786
PscI	ACATGT	1 cut(s)	5629
PshBI	ATTAAT	2 cut(s)	1698, 3288
Psp5II	RGGWCCY	1 cut(s)	2786
Psp6I	CCWGG	6 cut(s)	362, 543, 1186, 1933, 2605, 3775
PspEI	GGTNACC	1 cut(s)	3641
PspFI	CCCAGC	4 cut(s)	138, 3584, 3748, 4156
PspGI	CCWGG	6 cut(s)	362, 543, 1186, 1933, 2605, 3775
PspOMI	GGGCCC	2 cut(s)	648, 5762
PspPPI	RGGWCCY	1 cut(s)	2786
PspXI	VCTCGAGB	1 cut(s)	332
PstI	CTGCAG	4 cut(s)	1693, 2959, 2983, 5540
PstNI	CAGNNNCTG	3 cut(s)	1505, 3050, 5897
PsuI	RGATCY	8 cut(s)	2339, 2366, 2545, 4085, 4273, 4964, 5158, 5320
PvuII	CAGCTG	2 cut(s)	3748, 4780
RruI	TCGCGA	1 cut(s)	531
RseI	CAYNNNNRTG	8 cut(s)	1323, 2835, 3482, 3858, 5070, 5634, 5718, 5835
Rsr2I	CGGWCCG	1 cut(s)	341
RsrII	CGGWCCG	1 cut(s)	341
ScaI	AGTACT	3 cut(s)	766, 1480, 3895
SduI	GDGCHC	8 cut(s)	652, 696, 1679, 1934, 3219, 5766, 5886, 5914
SfcI	CTRYAG	8 cut(s)	409, 1566, 1689, 1914, 2955, 2973, 2979, 5536
Sfr274I	CTCGAG	1 cut(s)	332
SfuI	TTCGAA	2 cut(s)	681, 1169
SinI	GGWCC	7 cut(s)	4, 219, 341, 355, 1012, 2786, 4361
SlaI	CTCGAG	1 cut(s)	332
SmaI	CCCGGG	1 cut(s)	830
SmiMI	CAYNNNNRTG	8 cut(s)	1323, 2835, 3482, 3858, 5070, 5634, 5718, 5835
SmlI	CTYRAG	9 cut(s)	332, 641, 1660, 2939, 4017, 4667, 4885, 5177, 5757
SmoI	CTYRAG	9 cut(s)	332, 641, 1660, 2939, 4017, 4667, 4885, 5177, 5757
SpeI	ACTAGT	3 cut(s)	767, 3470, 5084
SspI	AATATT	1 cut(s)	5127
StyI	CCWWGG	8 cut(s)	32, 1302, 2007, 3025, 4701, 4921, 5255, 5862
TaiI	ACGT	7 cut(s)	319, 527, 2227, 3486, 3988, 5753, 5851
TaqII	GACCGA	1 cut(s)	372
TatI	WGTACW	7 cut(s)	764, 1478, 1882, 3248, 3299, 3893, 4941
TauI	GCSGC	7 cut(s)	202, 295, 379, 432, 435, 2000, 4777
TseFI	GTSAC	7 cut(s)	1110, 1258, 1346, 1423, 2019, 2330, 3641
TseI	GCWGC	8 cut(s)	2954, 2978, 2981, 3998, 4196, 4777, 4879, 5075
Tsp45I	GTSAC	7 cut(s)	1110, 1258, 1346, 1423, 2019, 2330, 3641
TspGWI	ACGGA	5 cut(s)	4455, 4776, 5246, 5419, 5706
TspMI	CCCGGG	1 cut(s)	828
Vha464I	CTTAAG	2 cut(s)	4667, 5177
VneI	GTGCAC	1 cut(s)	5910
VpaK11BI	GGWCC	7 cut(s)	4, 219, 341, 355, 1012, 2786, 4361
VspI	ATTAAT	2 cut(s)	1698, 3288
XbaI	TCTAGA	1 cut(s)	2336
XceI	RCATGY	2 cut(s)	1559, 5633
XcmI	CCANNNNNNNNNTGG	2 cut(s)	4508, 5389
XhoI	CTCGAG	1 cut(s)	332
XmaI	CCCGGG	1 cut(s)	828
XmiI	GTMKAC	3 cut(s)	2221, 2481, 4905
XmnI	GAANNNNTTC	3 cut(s)	2130, 3593, 5667
ZrmI	AGTACT	3 cut(s)	766, 1480, 3895
Zsp2I	ATGCAT	1 cut(s)	1962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.