Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18440590 .. 18441012

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1160100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGAGTTTGTGTGTGATACAGTATCAGATAAGGGTTCTCCAGAAACTTCAATTGACGTGCCTTACTTGCAGATGCTACCTTGTAGTCCATCAGTTGTCAAAATTTCGGATGAAAAAGCTGGTGGGGTTGACCAGAAATTGGATTTGAAGTCTGTGGTTGAAGGTGGTTCCAATGCATCTGCACGAAATTCGTTATCAGGTGGTACCAAATCAAAGATGGGGAAGTCAGTAGCTTTGTCGTTGCAAGATATCAAAAAGGCAACTCATGGTTTGAATCTCGTAAGCATAGAATCTGGTTTGATGAACCAGCTGGGTCAAGCAGCTACTACTGGGATTGTGCATGGTCGTCCATATTTTTTGTCTTCTACCTCAATGAAGACTGCCTCTTCAACTCATATTGCAAAGCCTCGGACTTGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.72

Weight (kDa)

8.93

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	102, 187
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	51, 148, 161, 274, 390
AjiI	CACGTC	1 cut(s)	58
AluBI	AGCT	4 cut(s)	119, 233, 310, 323
AluI	AGCT	4 cut(s)	119, 233, 310, 323
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	102, 187
Asp718I	GGTACC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	354, 383
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	97, 211
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmgBI	CACGTC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	169, 205
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	63, 185
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	2 cut(s)	354, 383
BpmI	CTGGAG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	169, 205
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	2 cut(s)	354, 383
BtrI	CACGTC	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	266, 341
CviJI	RGCY	5 cut(s)	119, 233, 310, 323, 406
CviKI_1	RGCY	5 cut(s)	119, 233, 310, 323, 406
CviQI	GTAC	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
Eco32I	GATATC	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	178
FaeI	CATG	2 cut(s)	269, 344
FaiI	YATR	5 cut(s)	267, 287, 342, 352, 396
FatI	CATG	2 cut(s)	265, 340
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	24
Hin1II	CATG	2 cut(s)	269, 344
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	274, 290
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	28, 109, 411
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	6 cut(s)	70, 176, 182, 244, 340, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	269, 344
KpnI	GGTACC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	54, 105, 146, 183, 279, 296, 315, 320
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	63, 185
MaeII	ACGT	1 cut(s)	57
MboII	GAAGA	3 cut(s)	354, 378, 388
MfeI	CAATTG	1 cut(s)	51
MluCI	AATT	4 cut(s)	51, 102, 137, 187
MnlI	CCTC	3 cut(s)	379, 394, 417
Mph1103I	ATGCAT	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	310
MunI	CAATTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	269, 344
NlaIV	GGNNCC	2 cut(s)	169, 205
NsiI	ATGCAT	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	274, 290
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	169, 205
PvuII	CAGCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	321
SetI	ASST	9 cut(s)	60, 82, 121, 166, 202, 235, 312, 325, 371
SfaNI	GCATC	2 cut(s)	63, 185
Sse9I	AATT	4 cut(s)	51, 102, 137, 187
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	60
TasI	AATT	4 cut(s)	51, 102, 137, 187
TfiI	GAWTC	2 cut(s)	274, 290
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	3 cut(s)	126, 317, 389
Van91I	CCANNNNNTGG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	102, 187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.