Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

11464127 .. 11472530

Gene Structure 8404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6120 bp

ATGGACCTCCCTCAGTACCTTCACCACCATCCAAGGTACGCGCCTTCCTCCTCACATAACTCCTCCTCTGACCCTAATTTCCCAAACTACCCTCACCGCACCACCAACCACTACCACCACCGCCACACTCCGCCTCCTCCTCCCCCAACCCAGCCCCCACAGCTCCGCTCACAATCCCCCTCCTCCTTCAAAACCCTACCCCTTCCTCCGCCGCCACCACATCCCCAAAGGACCACCTTCTCCCCCCACCCCATCGATTCCAATCATTCCAGAACCTTCTCCCCTCGCACCACTCACCGCCCGCCACCTCTCGATTCCGACCGGCCACGTCATCGCCTCTACCTCGAGTCCGGTCCGGATTACCGGGACCGGTCCAGGAACTATTCGCCGCGCGATTACGACCGCGAATTGCATAAACCCTATAGGCGCGATCCGGACGGCGGCGGCGGCGGCGCTAGGTTTAGATCGGAGTACGAAGAACAACGGGATCGTCGAGTTGATGACGGTTATAGCCGTCGCTCGAGCAATCACGAAACGACGACGTTTCGCGAAGTGGAGTTCCAGGATTCGGGTTCGGGTTGCTACGACGAGAGCGCGTATGAGGAGCTGTTGAAGAGTGGGAGGAGATATGAGGCGTATGAGATTCAAAGGTGGGGACTTGAGAGGGCCCAATCGGAGGAGGATTTGTACGATCCTTTCGAATTGGATGAGCACGATGAGGAGGATCGGATTGTTTCAGAGAAGAGGGATTATTATGGTTCGGAATCCGGAAGAAGTAGTAGTACTAGTAGATGGAAGCAGATACAAAAGAAGAGTGCTTTGCTTAGGCTTCAAACGCCCAAGGCCCGGGACCGGAATTACTCTGCTTATTTTGATAGTTCCGGCTCTGGTGGATCTTTCAGAGGTAAAGAACAGTATGAGTATGAGTATTCAGGTCATGGGAGGAAGGATGCAGTAGATGAAGAGAGGCGTGGTGGTGAAGGACAAGAGAGAGGCCAACAACAGAGAGGTGGGAGTAGCCCTCTGGATCTTGATGTTTCGTTTAAGTCGAATTCGCTGGTAGCCAAGCCGGTTAGAACTAGGGATGAGAAGAGAGGTTCAGTTTCGGATATGGATTGTTCAGAGTCACCACCTGCTAAGCTCCGTGAGGATGTTGTAAATTTGGATAGTTTGGCACTTGTTTCGAATAAGACATTGAGTCCTGGCAAGGAGGCCATGAAGTTGAAAGGAGAAGTTACTACTTCTGGCATGAATTCGCAGCCTTGTTCTGTTGTGACTGATGATGCGTTTGTAAAGAGTGAAGTGGAAACAGCACCCAAGGGCAAGATTTTACATAAAGATGGCAAGGATGTTGGTTCCAGTCAGAAGTCTTCTCCCAACGTTTCTAAGAAGACAAAAGTAGTGAAGAAAATAGTGGCCAAGAAGACAGTGAAAAAGGTCACAAAGCCCCCCACTTCACAGCCAGAAAGAAAGATTGATGAGCCGGGGATGAGTACTGTTCACAGTCTGTTTGCAGGCACTGGCAAAGGTGAAACCTCTTCCATTTCTGATCCTTGTCCAAATGATTTGCATGTGTTGCCTGTAGATAAGGAAGTAGAAGGTTCTCTGCCGAATGTTCTATCAGATGAATATGGCACTGTTCTCAACTCTTGTAGTAAGAATATTGGGAACAACTCAAGTGCAAATTTGGGCTCTTTGAGTCCAGCAGAGATCAATACTGATCAGAAGCACCCTCTGAATGTAGATACTCCGGTCAAGGGCTTGCTTACCATTTCAAATTTTAACAGCGATGCAACTGATTCAATCAAGGTAGCTACTAGTCCGGAAACTGGTGGTGTTGTGGATGTCAGCAAATCAATCTGTCAGAGTGGAAACATTTTATTGGTTGATAAAGTTGTACAAAAAGAATCATCACAGGCCATGTTGGCTGTAGAAGGCAATTTGAGCTCTGGTTTTTTAAATTCAGATAAGATGCATGAACTCACGAATGTAAAGGGTTCTGAACATGGGGCTGAAACCTTGGAGAAACTGTCACATCAGGAAATCATTGTTCCTGATGTTGGCACTGTGGATGCAGTAAGCGAACAACCTTGTAGATATCAGCTCCCCACATCACTTCAAAATGGTGGTGTTGTGGAAGAACTTCCTAAGGCTATATCTTCAGCAGAATATAATATTGTGGTTGGTTTGTCGAGTTCGGAGGAGACCAAAGCTGTCCGCTCCAAGATTGGTAGACGTACAAGGTGGGATTCTGATGAAGTTTATGTTAAGAAAGATATGTGCATTACAGTTTCCAATGGTGGGAATACCAATTCTTTTGGCAAGCAGTCATCACCTGATTGTGCCACTAAATCTTTTGAAATTTGTGCCACAGAAAGATCTCCAAATATTCCAAAATCAGTTGGAGATACTCATAGTGTTACACCTATGATTCAAAAGAAGAGAAAAGTTAAAACGCAGTTAGACTTTTCAAGGATATCCGACACATGTGTAGACCCTGTAAATGTTTCTCTCCGCAAAGATGCACCGGATACAACAGTAAGTTCCTTCCTGAAGGATCCTAGTCATGCAGAAGTTTCTGTTTCTGGTGTTCAAAAGTTAGATATGGAATCGCAGCCTGGTAATGATTGGGTCAGCGTTCTGAATGGGAAAAGTTCAGTAAATGGGTTTTCTGACACTAAGCTTTCAGCTAGAATTGATGCTAACTATGATACAAATGAGACTTCACCCGAGTATTCAAAGAGGAGAAAAGTGTCTGGCACTCATCTGGTATTGACTTCAGCTCAAACCAATGGAGGACCTGCAAATAAATCTACATCTTATATACAGGAATCTTCAACTCATAATGATGTTCCAACATATCAAGCGGACAAAGGTGCTTCTTCTAGCATAGGTTCTCAGTGTGCTACTTCTAATTTAATTCCATCTCCTGAGGAAATCAATGTCTATCTTGAGGACATTATGGCTGCAGTATCATCTGATACTGTAGCTGCAGCTGGGGACTCCTTTACTAATGATGATATGAAGATTAAGCACCAAGGTATTGACTCTTCTTCAGTATCTGAAGGGTCAGGTATTCCACATATGCAAATCCCTGGTCCTTTACAACCACGAAATGAGGATAAAGAGGATGGTACTGAAGTTATGGTTGTAAATAATCATCACCTTGACATTTTGGATATGGATGGTAGTCATGAAAAAGACTTTGATGTTCATGCAACAAATGAGCACATTATGGTTCAAGGTGAGACTGCTCCATGTACAATTAATTCAGAGCTTCAGCCTGCTAATTTGGGTATTAATTCTTTCAGTACAAATATAGAATCAGATTACCTCTGTGTTAAGGATAAACTGCCTTTTGTGCCAAGTTGTCTGCTGTCAATTGCTAATGGCAATGAAGTAACTTCTACCAACTCTATTGATGAAGGCATGAAGTCTCTGTCTGATACGCTGTCAGATACAGGTACTCCAGAAACTTCTACTAGTATCACTGACGTGCATATGCTGATTTGTAATCCTTCAGTTATTAAAAGTTTTGACGAAAAAGTTTGTGCGGATGACCAGAAATTTGAGGTGAAGTCTGAGGTTGCATCTGCTGGGAATTTATTCTCAGAGACCAAAACTAATTTAACATTAGATAATGTAACTGAAGGTCACCAATCAGTCACAGAGAAGGCAGTACCTTTGAAATTGCAGGATTCTATAAAGACATCTCATGGTCTGCATCTCGTAAGTGCTGAATCTGCATTGAAGAACCAGCTGGGTCAAGCTATTCATAGGATTGTTCCAGGTCGTCCATTTTGTGCCTTTACTACCTCACAGAAGGCTACCTCTTCAACACATTTATCAAAGCCTCGGACTTGGCATCGAAATGCTAATTCATCTGTATCTCCTCTTCCTGTGAGTACTCTTCCACCTCAAAGGCAGTTGCCACAAAGAAATGGAAAACTTGAAAGTAATTCTTATGTTCGTAAAGGTAACACCCTTGTTAGAAGACGTGCTACAGTTGCTGCTGTACCACAAAGCTCTCAAGGTCTCAGTTCATCTGTTCATCAGTTGAACTTTTCAGGTATAGATGGATTGAAGAAGAATGCAGGATCGGACAGTAGGGTTGACATTAAAAACCCTCCAAGAACAGGAGGACTCGATGCTTCTTCAGATAGGCCCCCAGCCCCACTACCCAGTGGAGCCAAAATGTCTGCATCTGCTGCCGTCTCTTCCGGGATTCCTACATCATCCCCACTAGCTGAGCCTCTTCTTAGTGATATCTCTGGAACTAAATCAGATCCTATGAATTGTTCGGAAACGAAAGATGCAGAAGGATCAGTCAAGGACTCGCTGGCAACTTCTGATACTCAGGAATACCATATTGGTCCAGTCAACAGTCTACATGATGGGAATCTGGCATCTTCAAATATGAAGAAGGTTATATATGTAAAGCGAAAATTAAATCAGTTGGTTGCATCATCTTCAAATCCGTCAGACCTTTCTGTCCACAATGCTGATAAGAACCAACGCTCAGATGGCTACTACAAGAGGCGCAAACACCAGCTAATTAGGTCTTCTTTGGAAAGTAATGGCAAAGATACGGTTCTCCTGCCCACTGACAATCTAAACTCAGGGGAGCAAAAGGCTCGTAAGGTTATCCCCAGTAGAACATTTAACAAGAAGCGATCACTTAAGGCTGTTGCGAGGATGAGTAAAAAAAACTCTTTGGTCTGGACACCAAGTGGTACACAGTCATCACATAATAATGGTAGTTCATATGACCATCAGAAGGTTCTGCCTCAGCTGTTTCCGTGGAAAAGAGCAAGATACTGGAGAACTGTCATGCAAAGTCAGGCTTCCAATTTCAATTATAGTTCCTCATCAACAATCAGTAAAAAATTGCTGCTCTCAAGGATGAGGGATACTGTATACACTAGGTCAACCCATGGATTTTCACTTAGAAAGTACAAGGTATTAAGTGTTGGTGGATCTAGTTTAAAATGGTCAAAATCCATTGAAAGTCGCTCAAAGAAAGTTAATGAGGAAGCTACACGGGCTGTTGCTGAAGTAGAGAAGAAGAAAAGAGAACACAATGGTGCTGCCCGCACTAGTTCTGGTTCTAAAATCAGAAACTCACCGGGAAAACGAATATTCCGCATTGGCTCTGTTCGTTACAAAATGGATCCTTCAAGGCGGACACTTAAGAGGATTTCAGATGACGAATCCTCAAAGTCTGTTGTGCTGAATCCAGAAACGGATGCCAAGAGATCATATGTTCCGAGGAGATTGGTGATTGGGAATGATGAATATGTGCGGATTGGAAATGGTAATCAGCTTATTAGAGATCCAAAGAAACGAACTCGCATATTGGCAAGTGAAAGAGTGAGATGGAGTTTGCACACTGCCAGACAGCGGTTGGCAAAAAAACGGAAATACTGCCAGTTTTTCACACGATTTGGGAAGTGTAACAAGGATGATGGAAAATGTCCCTATATTCATGACTCCTCCAAAATTGCAGTCTGCACAAAGTATCTGAAGGGTTTATGTTCCAACCCCAACTGCAGATTGACCCACAAGGTCATTCCAGAAAGAATGCCAGACTGTTCTTTCTTTCTGCAAGGTTTATGCACCAATAAAAATTGTTCTTACAGACATGTAAATGTAAATCCAAAGGCATCTACTTGTGAAGGATTTCTTAAAGGTTATTGTGCGGACGGAAATGAGTGCCGGAAGAAGCACAGCTATGTCTGCCAGACTTTTGAAGAAACAGGAACGTGTCCGCAAGGGCCCAAATGCAAGCTTCACCACCCCAAAAAGCGTATGAAGGGAAAGATAAAGAAACGATCAAGAGAACATAGAAATGGTTGGGGACGTTACTTTGTTTCCAAGGATGTTGGTGTTTCTGAGCCTGTAACAGCGTCTGCAAAGCACTGTGCACAAAATGGTGATGACATATTTGGTAATGATTTCATTAGCATCAATGTTAGTGACGAGGAGGCTGGAGAAAGTAATAATCCACCTGAGCAGACCACATTTTATGACAGTGATCCCTCTGAATTAGACTTGGATGATCTTGATGAACTAATTAAACCGGTTCGTTTGTTGAATAAGATGAAGACAAACATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

2040

Amino Acids

224.89

Weight (kDa)

8.91

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1141
AasI	GACNNNNNNGTC	1 cut(s)	4490
Acc36I	ACCTGC	2 cut(s)	1141, 2809
AccBSI	CCGCTC	2 cut(s)	168, 2220
AccI	GTMKAC	4 cut(s)	2233, 2493, 4387, 4917
AccII	CGCG	7 cut(s)	41, 391, 393, 405, 429, 549, 596
AccIII	TCCGGA	4 cut(s)	355, 433, 767, 1822
AclI	AACGTT	1 cut(s)	1380
AcoI	YGGCCR	2 cut(s)	323, 1416
AcsI	RAATTY	9 cut(s)	1051, 1159, 1252, 1684, 1777, 1960, 2361, 3566, 3601
AdeI	CACNNNGTG	1 cut(s)	4730
AflII	CTTAAG	2 cut(s)	4679, 5189
AflIII	ACRYGT	3 cut(s)	2486, 5641, 5762
AgeI	ACCGGT	2 cut(s)	369, 6079
AhdI	GACNNNNNGTC	1 cut(s)	1197
AhlI	ACTAGT	4 cut(s)	785, 1817, 3482, 5096
AjiI	CACGTC	3 cut(s)	329, 3496, 3998
AjnI	CCWGG	6 cut(s)	374, 561, 1201, 2617, 3094, 3787
AjuI	GAANNNNNNNTTGG	2 cut(s)	4353, 4385
AleI	CACNNNNGTG	2 cut(s)	3494, 5082
Alw21I	GWGCWC	4 cut(s)	714, 1949, 3231, 5926
Alw26I	GTCTC	7 cut(s)	2198, 2714, 3242, 3441, 3608, 4040, 4219
Alw44I	GTGCAC	1 cut(s)	5922
AlwNI	CAGNNNCTG	4 cut(s)	1520, 3062, 4010, 5909
Ama87I	CYCGRG	4 cut(s)	344, 520, 846, 2729
Aor13HI	TCCGGA	4 cut(s)	355, 433, 767, 1822
AoxI	GGCC	9 cut(s)	323, 666, 843, 994, 1212, 1416, 1917, 4163, 5774
ApaI	GGGCCC	2 cut(s)	670, 5778
ApaLI	GTGCAC	1 cut(s)	5922
ApeKI	GCWGC	9 cut(s)	1258, 2614, 2966, 2990, 2993, 4010, 4208, 4891, 5087
ApoI	RAATTY	9 cut(s)	1051, 1159, 1252, 1684, 1777, 1960, 2361, 3566, 3601
ArsI	GACNNNNNNTTYG	6 cut(s)	3082, 3114, 3551, 3583, 5490, 5522
AseI	ATTAAT	2 cut(s)	3267, 3300
AsiGI	ACCGGT	2 cut(s)	369, 6079
Asp700I	GAANNNNTTC	3 cut(s)	2142, 3605, 5679
AspLEI	GCGC	6 cut(s)	43, 393, 429, 455, 596, 4542
AsuC2I	CCSGG	6 cut(s)	365, 847, 848, 1485, 4222, 5127
AsuII	TTCGAA	2 cut(s)	699, 1184
AvaI	CYCGRG	4 cut(s)	344, 520, 846, 2729
AvaII	GGWCC	9 cut(s)	4, 231, 353, 367, 372, 850, 2798, 3098, 4373
AxyI	CCTNAGG	2 cut(s)	2148, 2931
BaeGI	GKGCMC	3 cut(s)	670, 5778, 5926
BaeI	ACNNNNGTAYC	6 cut(s)	1737, 1770, 2523, 2556, 3126, 3159
BalI	TGGCCA	1 cut(s)	1418
BamHI	GGATCC	2 cut(s)	2557, 5170
BanII	GRGCYC	4 cut(s)	670, 1694, 1949, 5778
BarI	GAAGNNNNNNTAC	8 cut(s)	766, 798, 3034, 3066, 3879, 3911, 3985, 4017
BbsI	GAAGAC	6 cut(s)	1362, 1397, 1430, 4000, 4554, 6110
Bbv12I	GWGCWC	4 cut(s)	714, 1949, 3231, 5926
BbvCI	CCTCAGC	1 cut(s)	4788
BbvI	GCAGC	9 cut(s)	1270, 2626, 2953, 2977, 3005, 3997, 4195, 4878, 5074
BceAI	ACGGC	3 cut(s)	454, 498, 4196
BcgI	CGANNNNNNTGC	4 cut(s)	1164, 1198, 4616, 4650
BciT130I	CCWGG	6 cut(s)	376, 563, 1203, 2619, 3096, 3789
BciVI	GTATCC	2 cut(s)	2524, 4903
BclI	TGATCA	1 cut(s)	1720
BcnI	CCSGG	6 cut(s)	365, 847, 848, 1485, 4222, 5127
BcoDI	GTCTC	7 cut(s)	2198, 2714, 3242, 3441, 3608, 4040, 4219
BcuI	ACTAGT	4 cut(s)	785, 1817, 3482, 5096
BfmI	CTRYAG	8 cut(s)	421, 1581, 1929, 2967, 2985, 2991, 4002, 5548
BfoI	RGCGCY	1 cut(s)	456
BfrI	CTTAAG	2 cut(s)	4679, 5189
BfuAI	ACCTGC	2 cut(s)	1141, 2809
BfuI	GTATCC	2 cut(s)	2524, 4903
BglI	GCCNNNNNGGC	1 cut(s)	1925
BglII	AGATCT	1 cut(s)	2378
BlpI	GCTNAGC	2 cut(s)	1137, 4248
BmcAI	AGTACT	3 cut(s)	784, 1495, 3907
Bme18I	GGWCC	9 cut(s)	4, 231, 353, 367, 372, 850, 2798, 3098, 4373
BmeRI	GACNNNNNGTC	1 cut(s)	1197
BmeT110I	CYCGRG	4 cut(s)	344, 520, 846, 2729
BmgBI	CACGTC	3 cut(s)	329, 3496, 3998
BmiI	GGNNCC	9 cut(s)	368, 668, 851, 1357, 2559, 4166, 4189, 5172, 5776
BmrI	ACTGGG	2 cut(s)	4176, 4644
BmuI	ACTGGG	2 cut(s)	4176, 4644
BpiI	GAAGAC	6 cut(s)	1362, 1397, 1430, 4000, 4554, 6110
BplI	GAGNNNNNCTC	2 cut(s)	1006, 1038
BpmI	CTGGAG	3 cut(s)	3453, 4840, 6009
Bpu10I	CCTNAGC	3 cut(s)	824, 4788, 6009
Bpu1102I	GCTNAGC	2 cut(s)	1137, 4248
Bpu14I	TTCGAA	2 cut(s)	699, 1184
BpuEI	CTTGAG	5 cut(s)	680, 1660, 2972, 4014, 4882
BpuMI	CCSGG	6 cut(s)	365, 847, 848, 1485, 4222, 5127
Bsa29I	ATCGAT	1 cut(s)	255
BsaBI	GATNNNNATC	2 cut(s)	261, 4398
BsaI	GGTCTC	3 cut(s)	2198, 3608, 4040
BsaXI	ACNNNNNCTCC	8 cut(s)	118, 148, 671, 701, 2015, 2045, 3451, 3481
Bse118I	RCCGGY	4 cut(s)	321, 369, 1069, 6079
Bse1I	ACTGG	8 cut(s)	1359, 1525, 1834, 4182, 4376, 4650, 4823, 5428
Bse21I	CCTNAGG	2 cut(s)	2148, 2931
Bse3DI	GCAATG	1 cut(s)	3400
Bse8I	GATNNNNATC	2 cut(s)	261, 4398
BseAI	TCCGGA	4 cut(s)	355, 433, 767, 1822
BseBI	CCWGG	6 cut(s)	376, 563, 1203, 2619, 3096, 3789
BseCI	ATCGAT	1 cut(s)	255
BseJI	GATNNNNATC	2 cut(s)	261, 4398
BseMI	GCAATG	1 cut(s)	3400
BseNI	ACTGG	8 cut(s)	1359, 1525, 1834, 4182, 4376, 4650, 4823, 5428
BseSI	GKGCMC	3 cut(s)	670, 5778, 5926
BseXI	GCAGC	9 cut(s)	1270, 2626, 2953, 2977, 3005, 3997, 4195, 4878, 5074
BseYI	CCCAGC	5 cut(s)	150, 2996, 3596, 3760, 4168
BsgI	GTGCAG	1 cut(s)	5494
Bsh1236I	CGCG	7 cut(s)	41, 391, 393, 405, 429, 549, 596
Bsh1285I	CGRYCG	2 cut(s)	322, 403
BshFI	GGCC	9 cut(s)	325, 668, 845, 996, 1214, 1418, 1919, 4165, 5776
BshTI	ACCGGT	2 cut(s)	369, 6079
BshVI	ATCGAT	1 cut(s)	255
BsiEI	CGRYCG	2 cut(s)	322, 403
BsiHKAI	GWGCWC	4 cut(s)	714, 1949, 3231, 5926
BsiHKCI	CYCGRG	4 cut(s)	344, 520, 846, 2729
BslFI	GGGAC	6 cut(s)	380, 669, 863, 3014, 5460, 5871
BsmAI	GTCTC	7 cut(s)	2198, 2714, 3242, 3441, 3608, 4040, 4219
BsmBI	CGTCTC	1 cut(s)	4219
BsmFI	GGGAC	6 cut(s)	380, 669, 863, 3014, 5460, 5871
BsmI	GAATGC	2 cut(s)	4096, 5586
BsnI	GGCC	9 cut(s)	325, 668, 845, 996, 1214, 1418, 1919, 4165, 5776
Bso31I	GGTCTC	3 cut(s)	2198, 3608, 4040
BsoBI	CYCGRG	4 cut(s)	344, 520, 846, 2729
Bsp119I	TTCGAA	2 cut(s)	699, 1184
Bsp120I	GGGCCC	2 cut(s)	666, 5774
Bsp1286I	GDGCHC	7 cut(s)	670, 714, 1694, 1949, 3231, 5778, 5926
Bsp13I	TCCGGA	4 cut(s)	355, 433, 767, 1822
Bsp1407I	TGTACA	2 cut(s)	1897, 3260
Bsp1720I	GCTNAGC	2 cut(s)	1137, 4248
Bsp19I	CCATGG	1 cut(s)	4933
Bsp68I	TCGCGA	1 cut(s)	549
BspANI	GGCC	9 cut(s)	325, 668, 845, 996, 1214, 1418, 1919, 4165, 5776
BspDI	ATCGAT	1 cut(s)	255
BspEI	TCCGGA	4 cut(s)	355, 433, 767, 1822
BspFNI	CGCG	7 cut(s)	41, 391, 393, 405, 429, 549, 596
BspHI	TCATGA	2 cut(s)	3193, 5485
BspLI	GGNNCC	9 cut(s)	368, 668, 851, 1357, 2559, 4166, 4189, 5172, 5776
BspMAI	CTGCAG	3 cut(s)	2971, 2995, 5552
BspMI	ACCTGC	2 cut(s)	1141, 2809
BspT104I	TTCGAA	2 cut(s)	699, 1184
BspTI	CTTAAG	2 cut(s)	4679, 5189
BspTNI	GGTCTC	3 cut(s)	2198, 3608, 4040
BsrBI	CCGCTC	2 cut(s)	168, 2220
BsrDI	GCAATG	1 cut(s)	3400
BsrFI	RCCGGY	4 cut(s)	321, 369, 1069, 6079
BsrGI	TGTACA	2 cut(s)	1897, 3260
BsrI	ACTGG	8 cut(s)	1359, 1525, 1834, 4182, 4376, 4650, 4823, 5428
BssAI	RCCGGY	4 cut(s)	321, 369, 1069, 6079
BssNAI	GTATAC	1 cut(s)	4918
BssT1I	CCWWGG	7 cut(s)	32, 840, 1317, 2019, 3037, 4933, 5874
Bst1107I	GTATAC	1 cut(s)	4918
Bst2UI	CCWGG	6 cut(s)	376, 563, 1203, 2619, 3096, 3789
BstAFI	CTTAAG	2 cut(s)	4679, 5189
BstAPI	GCANNNNNTGC	2 cut(s)	1576, 4208
BstAUI	TGTACA	2 cut(s)	1897, 3260
BstBI	TTCGAA	2 cut(s)	699, 1184
BstC8I	GCNNGC	8 cut(s)	302, 1516, 1763, 2324, 3285, 4341, 5092, 5786
BstDSI	CCRYGG	2 cut(s)	4799, 4933
BstEII	GGTNACC	1 cut(s)	3653
BstFNI	CGCG	7 cut(s)	41, 391, 393, 405, 429, 549, 596
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	6 cut(s)	43, 393, 429, 455, 596, 4542
BstMAI	GTCTC	7 cut(s)	2198, 2714, 3242, 3441, 3608, 4040, 4219
BstMCI	CGRYCG	2 cut(s)	322, 403
BstNI	CCWGG	6 cut(s)	376, 563, 1203, 2619, 3096, 3789
BstNSI	RCATGY	3 cut(s)	1574, 2490, 5645
BstPI	GGTNACC	1 cut(s)	3653
BstSFI	CTRYAG	8 cut(s)	421, 1581, 1929, 2967, 2985, 2991, 4002, 5548
BstSLI	GKGCMC	3 cut(s)	670, 5778, 5926
BstUI	CGCG	7 cut(s)	41, 391, 393, 405, 429, 549, 596
BstV1I	GCAGC	9 cut(s)	1270, 2626, 2953, 2977, 3005, 3997, 4195, 4878, 5074
BstV2I	GAAGAC	6 cut(s)	1362, 1397, 1430, 4000, 4554, 6110
BstX2I	RGATCY	8 cut(s)	893, 1027, 2378, 2557, 4285, 4976, 5170, 5332
BstYI	RGATCY	8 cut(s)	893, 1027, 2378, 2557, 4285, 4976, 5170, 5332
BstZ17I	GTATAC	1 cut(s)	4918
Bsu15I	ATCGAT	1 cut(s)	255
Bsu36I	CCTNAGG	2 cut(s)	2148, 2931
BsuI	GTATCC	2 cut(s)	2524, 4903
BsuRI	GGCC	9 cut(s)	325, 668, 845, 996, 1214, 1418, 1919, 4165, 5776
BsuTUI	ATCGAT	1 cut(s)	255
BtgI	CCRYGG	2 cut(s)	4799, 4933
BtgZI	GCGATG	2 cut(s)	317, 1803
BtrI	CACGTC	3 cut(s)	329, 3496, 3998
BtsI	GCAGTG	1 cut(s)	5388
BtuMI	TCGCGA	1 cut(s)	549
BveI	ACCTGC	2 cut(s)	1141, 2809
Cac8I	GCNNGC	8 cut(s)	302, 1516, 1763, 2324, 3285, 4341, 5092, 5786
CaiI	CAGNNNCTG	4 cut(s)	1520, 3062, 4010, 5909
CciI	TCATGA	2 cut(s)	3193, 5485
CfoI	GCGC	6 cut(s)	43, 393, 429, 455, 596, 4542
Cfr10I	RCCGGY	4 cut(s)	321, 369, 1069, 6079
Cfr9I	CCCGGG	1 cut(s)	846
ClaI	ATCGAT	1 cut(s)	255
CpoI	CGGWCCG	1 cut(s)	353
CseI	GACGC	1 cut(s)	5895
CspAI	ACCGGT	2 cut(s)	369, 6079
CspI	CGGWCCG	1 cut(s)	353
DraI	TTTAAA	2 cut(s)	1959, 4986
DraIII	CACNNNGTG	1 cut(s)	4730
DrdI	GACNNNNNNGTC	1 cut(s)	4490
DriI	GACNNNNNGTC	1 cut(s)	1197
DseDI	GACNNNNNNGTC	1 cut(s)	4490
EaeI	YGGCCR	2 cut(s)	323, 1416
Eam1105I	GACNNNNNGTC	1 cut(s)	1197
EciI	GGCGGA	3 cut(s)	120, 198, 5197
Ecl136II	GAGCTC	1 cut(s)	1947
Eco130I	CCWWGG	7 cut(s)	32, 840, 1317, 2019, 3037, 4933, 5874
Eco24I	GRGCYC	4 cut(s)	670, 1694, 1949, 5778
Eco31I	GGTCTC	3 cut(s)	2198, 3608, 4040
Eco32I	GATATC	3 cut(s)	2099, 2478, 4267
Eco47I	GGWCC	9 cut(s)	4, 231, 353, 367, 372, 850, 2798, 3098, 4373
Eco53kI	GAGCTC	1 cut(s)	1947
Eco81I	CCTNAGG	2 cut(s)	2148, 2931
Eco88I	CYCGRG	4 cut(s)	344, 520, 846, 2729
Eco91I	GGTNACC	1 cut(s)	3653
EcoICRI	GAGCTC	1 cut(s)	1947
EcoO109I	RGGNCCY	4 cut(s)	666, 2798, 4164, 5774
EcoO65I	GGTNACC	1 cut(s)	3653
EcoRI	GAATTC	2 cut(s)	1051, 1252
EcoRII	CCWGG	6 cut(s)	374, 561, 1201, 2617, 3094, 3787
EcoRV	GATATC	3 cut(s)	2099, 2478, 4267
EcoT14I	CCWWGG	7 cut(s)	32, 840, 1317, 2019, 3037, 4933, 5874
EcoT22I	ATGCAT	1 cut(s)	1977
EcoT38I	GRGCYC	4 cut(s)	670, 1694, 1949, 5778
ErhI	CCWWGG	7 cut(s)	32, 840, 1317, 2019, 3037, 4933, 5874
Esp3I	CGTCTC	1 cut(s)	4219
FalI	AAGNNNNNCTT	6 cut(s)	3946, 3978, 4828, 4860, 5667, 5699
FaqI	GGGAC	6 cut(s)	380, 669, 863, 3014, 5460, 5871
FauI	CCCGC	2 cut(s)	309, 5099
FauNDI	CATATG	4 cut(s)	3084, 3501, 4765, 5260
FbaI	TGATCA	1 cut(s)	1720
FblI	GTMKAC	4 cut(s)	2233, 2493, 4387, 4917
FriOI	GRGCYC	4 cut(s)	670, 1694, 1949, 5778
GlaI	GCGC	6 cut(s)	42, 392, 428, 454, 595, 4541
GsaI	CCCAGC	5 cut(s)	154, 3000, 3600, 3764, 4172
GsuI	CTGGAG	3 cut(s)	3453, 4840, 6009
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	9 cut(s)	325, 668, 845, 996, 1214, 1418, 1919, 4165, 5776
HgaI	GACGC	1 cut(s)	5895
HhaI	GCGC	6 cut(s)	43, 393, 429, 455, 596, 4542
Hin6I	GCGC	6 cut(s)	41, 391, 427, 453, 594, 4540
HinP1I	GCGC	6 cut(s)	41, 391, 427, 453, 594, 4540
HincII	GTYRAC	3 cut(s)	4114, 4381, 4929
HindII	GTYRAC	3 cut(s)	4114, 4381, 4929
HindIII	AAGCTT	2 cut(s)	2681, 5786
Hpy99I	CGWCG	5 cut(s)	495, 519, 541, 544, 590
HpyCH4IV	ACGT	8 cut(s)	328, 542, 1380, 2236, 3495, 3997, 5762, 5860
HpySE526I	ACGT	8 cut(s)	328, 542, 1380, 2236, 3495, 3997, 5762, 5860
HspAI	GCGC	6 cut(s)	41, 391, 427, 453, 594, 4540
Kpn2I	TCCGGA	4 cut(s)	355, 433, 767, 1822
Ksp22I	TGATCA	1 cut(s)	1720
LmnI	GCTCC	8 cut(s)	168, 604, 1146, 2109, 2225, 3259, 4187, 4624
Lsp1109I	GCAGC	9 cut(s)	1270, 2626, 2953, 2977, 3005, 3997, 4195, 4878, 5074
MaeII	ACGT	8 cut(s)	328, 542, 1380, 2236, 3495, 3997, 5762, 5860
MbiI	CCGCTC	2 cut(s)	168, 2220
MfeI	CAATTG	1 cut(s)	3381
MflI	RGATCY	8 cut(s)	893, 1027, 2378, 2557, 4285, 4976, 5170, 5332
MhlI	GDGCHC	7 cut(s)	670, 714, 1694, 1949, 3231, 5778, 5926
MlsI	TGGCCA	1 cut(s)	1418
MluNI	TGGCCA	1 cut(s)	1418
MlyI	GAGTC	9 cut(s)	356, 1133, 1207, 1708, 2996, 3041, 4137, 4328, 5483
MmeI	TCCRAC	5 cut(s)	342, 2383, 2505, 2879, 5562
Mox20I	TGGCCA	1 cut(s)	1418
Mph1103I	ATGCAT	1 cut(s)	1977
MroI	TCCGGA	4 cut(s)	355, 433, 767, 1822
MroXI	GAANNNNTTC	3 cut(s)	2142, 3605, 5679
MscI	TGGCCA	1 cut(s)	1418
MslI	CAYNNNNRTG	9 cut(s)	1338, 2847, 3494, 3870, 4752, 5082, 5646, 5730, 5847
Msp20I	TGGCCA	1 cut(s)	1418
MspA1I	CMGCKG	4 cut(s)	2996, 3760, 4792, 5401
MspCI	CTTAAG	2 cut(s)	4679, 5189
MunI	CAATTG	1 cut(s)	3381
Mva1269I	GAATGC	2 cut(s)	4096, 5586
MvaI	CCWGG	6 cut(s)	376, 563, 1203, 2619, 3096, 3789
MvnI	CGCG	7 cut(s)	41, 391, 393, 405, 429, 549, 596
NciI	CCSGG	6 cut(s)	365, 847, 848, 1485, 4222, 5127
NcoI	CCATGG	1 cut(s)	4933
NdeI	CATATG	4 cut(s)	3084, 3501, 4765, 5260
NlaIV	GGNNCC	9 cut(s)	368, 668, 851, 1357, 2559, 4166, 4189, 5172, 5776
NmuCI	GTSAC	7 cut(s)	1125, 1273, 1438, 2031, 3653, 3664, 5975
NruI	TCGCGA	1 cut(s)	549
NsiI	ATGCAT	1 cut(s)	1977
NspI	RCATGY	3 cut(s)	1574, 2490, 5645
NspV	TTCGAA	2 cut(s)	699, 1184
OliI	CACNNNNGTG	2 cut(s)	3494, 5082
PaeR7I	CTCGAG	2 cut(s)	344, 520
PagI	TCATGA	2 cut(s)	3193, 5485
PaqCI	CACCTGC	1 cut(s)	1141
PciI	ACATGT	2 cut(s)	2486, 5641
PcsI	WCGNNNNNNNCGW	3 cut(s)	490, 696, 1046
PctI	GAATGC	2 cut(s)	4096, 5586
PdmI	GAANNNNTTC	3 cut(s)	2142, 3605, 5679
PfoI	TCCNGGA	3 cut(s)	374, 561, 4220
PinAI	ACCGGT	2 cut(s)	369, 6079
PleI	GAGTC	9 cut(s)	355, 1132, 1206, 1707, 2996, 3041, 4137, 4328, 5483
PpsI	GAGTC	9 cut(s)	355, 1132, 1206, 1707, 2996, 3041, 4137, 4328, 5483
PpuMI	RGGWCCY	1 cut(s)	2798
PscI	ACATGT	2 cut(s)	2486, 5641
PshBI	ATTAAT	2 cut(s)	3267, 3300
Psp124BI	GAGCTC	1 cut(s)	1949
Psp1406I	AACGTT	1 cut(s)	1380
Psp5II	RGGWCCY	1 cut(s)	2798
Psp6I	CCWGG	6 cut(s)	374, 561, 1201, 2617, 3094, 3787
PspEI	GGTNACC	1 cut(s)	3653
PspFI	CCCAGC	5 cut(s)	150, 2996, 3596, 3760, 4168
PspGI	CCWGG	6 cut(s)	374, 561, 1201, 2617, 3094, 3787
PspN4I	GGNNCC	9 cut(s)	368, 668, 851, 1357, 2559, 4166, 4189, 5172, 5776
PspOMI	GGGCCC	2 cut(s)	666, 5774
PspPPI	RGGWCCY	1 cut(s)	2798
PspXI	VCTCGAGB	2 cut(s)	344, 520
PstI	CTGCAG	3 cut(s)	2971, 2995, 5552
PstNI	CAGNNNCTG	4 cut(s)	1520, 3062, 4010, 5909
PsuI	RGATCY	8 cut(s)	893, 1027, 2378, 2557, 4285, 4976, 5170, 5332
PvuII	CAGCTG	3 cut(s)	2996, 3760, 4792
RruI	TCGCGA	1 cut(s)	549
RseI	CAYNNNNRTG	9 cut(s)	1338, 2847, 3494, 3870, 4752, 5082, 5646, 5730, 5847
Rsr2I	CGGWCCG	1 cut(s)	353
RsrII	CGGWCCG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	1949
ScaI	AGTACT	3 cut(s)	784, 1495, 3907
SchI	GAGTC	9 cut(s)	356, 1133, 1207, 1708, 2996, 3041, 4137, 4328, 5483
SduI	GDGCHC	7 cut(s)	670, 714, 1694, 1949, 3231, 5778, 5926
SfcI	CTRYAG	8 cut(s)	421, 1581, 1929, 2967, 2985, 2991, 4002, 5548
Sfr274I	CTCGAG	2 cut(s)	344, 520
SfuI	TTCGAA	2 cut(s)	699, 1184
SinI	GGWCC	9 cut(s)	4, 231, 353, 367, 372, 850, 2798, 3098, 4373
SlaI	CTCGAG	2 cut(s)	344, 520
SmaI	CCCGGG	1 cut(s)	848
SmiMI	CAYNNNNRTG	9 cut(s)	1338, 2847, 3494, 3870, 4752, 5082, 5646, 5730, 5847
SmlI	CTYRAG	9 cut(s)	344, 520, 659, 1675, 2951, 4029, 4679, 4897, 5189
SmoI	CTYRAG	9 cut(s)	344, 520, 659, 1675, 2951, 4029, 4679, 4897, 5189
SpeI	ACTAGT	4 cut(s)	785, 1817, 3482, 5096
SspI	AATATT	4 cut(s)	1663, 2176, 2389, 5139
SstI	GAGCTC	1 cut(s)	1949
StyI	CCWWGG	7 cut(s)	32, 840, 1317, 2019, 3037, 4933, 5874
TaiI	ACGT	8 cut(s)	331, 545, 1383, 2239, 3498, 4000, 5765, 5863
TatI	WGTACW	7 cut(s)	782, 1493, 1897, 3260, 3311, 3905, 4953
TauI	GCSGC	6 cut(s)	214, 391, 444, 447, 450, 453
TseFI	GTSAC	7 cut(s)	1125, 1273, 1438, 2031, 3653, 3664, 5975
TseI	GCWGC	9 cut(s)	1258, 2614, 2966, 2990, 2993, 4010, 4208, 4891, 5087
Tsp45I	GTSAC	7 cut(s)	1125, 1273, 1438, 2031, 3653, 3664, 5975
TspGWI	ACGGA	6 cut(s)	1133, 4467, 4788, 5258, 5431, 5718
TspMI	CCCGGG	1 cut(s)	846
Vha464I	CTTAAG	2 cut(s)	4679, 5189
VneI	GTGCAC	1 cut(s)	5922
VpaK11BI	GGWCC	9 cut(s)	4, 231, 353, 367, 372, 850, 2798, 3098, 4373
VspI	ATTAAT	2 cut(s)	3267, 3300
XapI	RAATTY	9 cut(s)	1051, 1159, 1252, 1684, 1777, 1960, 2361, 3566, 3601
XceI	RCATGY	3 cut(s)	1574, 2490, 5645
XcmI	CCANNNNNNNNNTGG	2 cut(s)	4520, 5401
XhoI	CTCGAG	2 cut(s)	344, 520
XmaI	CCCGGG	1 cut(s)	846
XmiI	GTMKAC	4 cut(s)	2233, 2493, 4387, 4917
XmnI	GAANNNNTTC	3 cut(s)	2142, 3605, 5679
ZrmI	AGTACT	3 cut(s)	784, 1495, 3907
Zsp2I	ATGCAT	1 cut(s)	1977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.