Rh6AG377000

zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
57569558 .. 57572848
3291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG377000.1

Sequence Viewer

Length: 1425 bp
ATGAGTAAAAAGAATTCCTTGGTCTGGACACCAAGTGGTTCACAGTCATCAAATAATAATGGTAGTTCATATGACCATCAGAAGGTTCTGCCTCAGCTGTTTCCGTGGAAAAGAGCAAGATACTGGAGAACTGTCATGCAAAGTCAGGCTTCCAATTTCAATTATAGTTCCTCATCAACAATCAGTAAAAAGTTGCTGCTCTCAAGGATGAGGGATACTGTATACACTAGGTCAACCCATGGATTTTCACTTAGAAAGTACAAGGTATTAAGTGTTGGTGGATCTAGTTTAAAATGGTCAAAATCCATTGAAAGTCGCTCAAAGAAAGTTAATGAGGAAGCTACACGGGCTGTTGCTGAAGTAGAGAAGAAGAAAAGAGAACACAATGGTGCTGCCTGCACTAGTTCTGGTTCTAAAATCAGAAACTCACCGGGAAAACGAATATTCCGCATTGGCTCTGTTCGTTACAAAATGGATCCTTCAAGGCGGACACTTAAGAGGATTTCAGATGACGAATCCTCAAAGTCTGTTGTGCTGAATCCAGAAACGGATGCCAAGAGATCATATGTTCCAAGGAGATTGGTGATTGGGAATGACGAATATGTGCGGATTGGAAATGGTAATCAGCTTATTAGAGATCCAAAGAAACGAACTCGCATATTGGCAAGTGAAAGAGTTAGATGGAGTTTGCACACTGCCAGACAGCGGTTGGCAAAAAAACGGAAATACTGCCAGTTTTTCACACGATTTGGGAAGTGTAACAAGGATGATGGAAAATGTCCCTATATTCATGACTCCTCCAAAATTGCAGTCTGCACAAAGTATCTGAACGGTTTATGTTCCAACCCCAACTGCAGATTAACCCACAAGGTCATTCCAGAAAGAATGCCAGACTGTTCTTTCTTTCTGCAAGGTTTATGCACCAATAAAAATTGTTCTTACAGACATGTAAATGTAAATCCGAAGGCTTCTACTTGTGAAGGATTTCTTAAAGGTTATTGTGCGGACGGAAATGAGTGCCGGAAGAAGCACAGCTATGTCTGCCAGACTTTTGAAGAAACAGGAATGTGTCCTCAAGGGCCCAAATGCAAGCTTCACCACCCCAAAAAGCGGATGAAGGGAAAGATAAAGAAACGATCAAGAGAACATAGAAATGGTTGGGGACGTTACTTTGTTTCCAAGGATGTTGGTGTTTCTGAGCCTGTAACAGCGTCTGCAAAGCACTGTGCACAAAATGGTGATGACATATTTGGTAATGATTTCGTTAGCATCAATGTTAGTGACGAGGAGGCTGGAGAAAGTAACAATCCACCTGAGCAAACCACATTTTATGACAGTGATCCCTCTGAATTAGACTTGGATGATCTTGATGAACTAATTAAACCGGTTCGTTTGTTGAATAAGATGAAGACAAACATTTATTGA

Protein Analysis

474

Amino Acids

54.08

Weight (kDa)

9.83

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 222
AciI CCGC 6 cut(s) 448, 487, 607, 706, 1004, 1111
AclWI GGATC 5 cut(s) 289, 470, 483, 632, 1334
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 4 cut(s) 24, 82, 705, 1110
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 946
AgeI ACCGGT 1 cut(s) 1384
AgsI TTSAA 5 cut(s) 160, 311, 483, 1055, 1399
AhlI ACTAGT 1 cut(s) 401
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 5 cut(s) 97, 341, 628, 1035, 1093
AluI AGCT 5 cut(s) 97, 341, 628, 1035, 1093
Alw21I GWGCWC 1 cut(s) 1231
Alw44I GTGCAC 1 cut(s) 1227
AlwI GGATC 5 cut(s) 289, 470, 483, 632, 1334
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 1 cut(s) 1079
ApaI GGGCCC 1 cut(s) 1083
ApaLI GTGCAC 1 cut(s) 1227
ApeKI GCWGC 2 cut(s) 196, 392
ApoI RAATTY 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 795, 827
AsiGI ACCGGT 1 cut(s) 1384
Asp700I GAANNNNTTC 1 cut(s) 984
AspS9I GGNCC 2 cut(s) 1079, 1080
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 4 cut(s) 420, 595, 1088, 1250
BaeGI GKGCMC 2 cut(s) 1083, 1231
BamHI GGATCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 1083
BbsI GAAGAC 1 cut(s) 1415
Bbv12I GWGCWC 1 cut(s) 1231
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 183, 379
BccI CCATC 3 cut(s) 84, 675, 764
BciVI GTATCC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 432
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 228, 285, 402
BfmI CTRYAG 1 cut(s) 853
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 208
BisI GCNGC 2 cut(s) 197, 393
BlsI GCNGC 2 cut(s) 198, 394
Bme1390I CCNGG 1 cut(s) 432
BmgT120I GGNCC 2 cut(s) 1079, 1080
BmiI GGNNCC 2 cut(s) 477, 1081
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 541, 1278
BpiI GAAGAC 1 cut(s) 1415
BpmI CTGGAG 2 cut(s) 145, 1314
Bpu10I CCTNAGC 2 cut(s) 93, 1314
BpuEI CTTGAG 2 cut(s) 187, 1059
BpuMI CCSGG 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 18, 104, 238, 572, 1179
BsaWI WCCGGW 1 cut(s) 1384
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 82, 705, 1110
Bse118I RCCGGY 1 cut(s) 1384
Bse1I ACTGG 2 cut(s) 128, 733
BseDI CCNNGG 5 cut(s) 18, 104, 238, 572, 1179
BseGI GGATG 6 cut(s) 213, 556, 772, 1119, 1189, 1366
BseLI CCNNNNNNNGG 4 cut(s) 24, 82, 705, 1110
BseMII CTCAG 3 cut(s) 107, 1188, 1305
BseNI ACTGG 2 cut(s) 128, 733
BseRI GAGGAG 2 cut(s) 787, 1301
BseSI GKGCMC 2 cut(s) 1083, 1231
BseXI GCAGC 2 cut(s) 183, 379
BsgI GTGCAG 2 cut(s) 382, 799
BshFI GGCC 1 cut(s) 1081
BshTI ACCGGT 1 cut(s) 1384
BsiHKAI GWGCWC 1 cut(s) 1231
BsiSI CCGG 3 cut(s) 431, 1021, 1385
BslFI GGGAC 2 cut(s) 765, 1176
BslI CCNNNNNNNGG 4 cut(s) 24, 82, 705, 1110
BsmFI GGGAC 2 cut(s) 765, 1176
BsmI GAATGC 1 cut(s) 891
BsnI GGCC 1 cut(s) 1081
Bsp120I GGGCCC 1 cut(s) 1079
Bsp1286I GDGCHC 2 cut(s) 1083, 1231
Bsp143I GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 6 cut(s) 448, 487, 607, 706, 1004, 1111
BspANI GGCC 1 cut(s) 1081
BspCNI CTCAG 3 cut(s) 106, 1189, 1306
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 2 cut(s) 477, 1081
BspMAI CTGCAG 1 cut(s) 857
BspPI GGATC 5 cut(s) 289, 470, 483, 632, 1334
BspTI CTTAAG 1 cut(s) 494
BsrFI RCCGGY 1 cut(s) 1384
BsrI ACTGG 2 cut(s) 128, 733
BssAI RCCGGY 1 cut(s) 1384
BssECI CCNNGG 5 cut(s) 18, 104, 238, 572, 1179
BssMI GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
BssNAI GTATAC 1 cut(s) 223
BssT1I CCWWGG 4 cut(s) 18, 238, 572, 1179
Bst1107I GTATAC 1 cut(s) 223
Bst4CI ACNGT 7 cut(s) 45, 133, 220, 833, 896, 1226, 1337
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 397, 1091
BstDEI CTNAG 4 cut(s) 93, 251, 1197, 1314
BstDSI CCRYGG 2 cut(s) 104, 238
BstF5I GGATG 6 cut(s) 213, 556, 772, 1119, 1189, 1366
BstKTI GATC 7 cut(s) 284, 478, 563, 640, 1139, 1342, 1366
BstMBI GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
BstMWI GCNNNNNNNGC 2 cut(s) 347, 1041
BstNSI RCATGY 1 cut(s) 950
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 853
BstSLI GKGCMC 2 cut(s) 1083, 1231
BstV1I GCAGC 2 cut(s) 183, 379
BstV2I GAAGAC 1 cut(s) 1415
BstX2I RGATCY 3 cut(s) 281, 475, 637
BstYI RGATCY 3 cut(s) 281, 475, 637
BstZ17I GTATAC 1 cut(s) 223
BsuI GTATCC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 1081
BtgI CCRYGG 2 cut(s) 104, 238
BtsCI GGATG 6 cut(s) 213, 556, 772, 1119, 1189, 1366
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 693, 1222, 1342
Cac8I GCNNGC 2 cut(s) 397, 1091
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 1384
Cfr13I GGNCC 2 cut(s) 1079, 1080
CseI GACGC 1 cut(s) 1200
Csp6I GTAC 1 cut(s) 259
CspAI ACCGGT 1 cut(s) 1384
CviAII CATG 4 cut(s) 136, 239, 791, 947
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 4 cut(s) 93, 251, 1197, 1314
DpnI GATC 7 cut(s) 283, 477, 562, 639, 1138, 1341, 1365
DpnII GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
DraI TTTAAA 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 35
EciI GGCGGA 1 cut(s) 502
Eco130I CCWWGG 4 cut(s) 18, 238, 572, 1179
Eco24I GRGCYC 1 cut(s) 1083
Eco57I CTGAAG 1 cut(s) 378
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRI GAATTC 1 cut(s) 13
EcoT14I CCWWGG 4 cut(s) 18, 238, 572, 1179
EcoT38I GRGCYC 1 cut(s) 1083
ErhI CCWWGG 4 cut(s) 18, 238, 572, 1179
FaeI CATG 4 cut(s) 139, 242, 794, 950
FalI AAGNNNNNCTT 5 cut(s) 34, 133, 165, 972, 1004
FaqI GGGAC 2 cut(s) 765, 1176
FatI CATG 4 cut(s) 135, 238, 790, 946
FauNDI CATATG 2 cut(s) 70, 565
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 197, 393
FokI GGATG 6 cut(s) 220, 563, 779, 1126, 1196, 1373
FriOI GRGCYC 1 cut(s) 1083
Fsp4HI GCNGC 2 cut(s) 197, 393
FspBI CTAG 3 cut(s) 228, 285, 402
GluI GCNGC 2 cut(s) 197, 393
GsuI CTGGAG 2 cut(s) 145, 1314
HaeIII GGCC 1 cut(s) 1081
HapII CCGG 3 cut(s) 431, 1021, 1385
HgaI GACGC 1 cut(s) 1200
Hin1II CATG 4 cut(s) 139, 242, 794, 950
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HindIII AAGCTT 1 cut(s) 1091
HinfI GANTC 3 cut(s) 515, 538, 794
HpaII CCGG 3 cut(s) 431, 1021, 1385
HphI GGTGA 4 cut(s) 420, 595, 1088, 1250
Hpy166II GTNNAC 4 cut(s) 41, 223, 234, 1229
Hpy188I TCNGA 7 cut(s) 81, 422, 508, 828, 963, 1198, 1348
Hpy188III TCNNGA 6 cut(s) 25, 542, 791, 878, 1140, 1367
Hpy8I GTNNAC 4 cut(s) 41, 223, 234, 1229
HpyAV CCTTC 5 cut(s) 76, 489, 958, 974, 1111
HpyCH4III ACNGT 7 cut(s) 45, 133, 220, 833, 896, 1226, 1337
HpyCH4IV ACGT 1 cut(s) 1165
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 1041
HpyF3I CTNAG 4 cut(s) 93, 251, 1197, 1314
HpySE526I ACGT 1 cut(s) 1165
Hsp92II CATG 4 cut(s) 139, 242, 794, 950
Kzo9I GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
Lsp1109I GCAGC 2 cut(s) 183, 379
LweI GCATC 2 cut(s) 541, 1278
MaeI CTAG 3 cut(s) 228, 285, 402
MaeII ACGT 1 cut(s) 1165
MaeIII GTNAC 6 cut(s) 464, 758, 1166, 1204, 1280, 1301
MalI GATC 7 cut(s) 283, 477, 562, 639, 1138, 1341, 1365
MboI GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
MboII GAAGA 5 cut(s) 379, 382, 1036, 1067, 1420
MflI RGATCY 3 cut(s) 281, 475, 637
MhlI GDGCHC 2 cut(s) 1083, 1231
MluCI AATT 7 cut(s) 13, 154, 160, 804, 931, 1349, 1377
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 1 cut(s) 867
MroXI GAANNNNTTC 1 cut(s) 984
MseI TTAA 7 cut(s) 269, 290, 330, 495, 860, 990, 1380
MslI CAYNNNNRTG 4 cut(s) 387, 951, 1035, 1152
MspA1I CMGCKG 2 cut(s) 97, 706
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 3 cut(s) 431, 1021, 1385
MspR9I CCNGG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 891
MwoI GCNNNNNNNGC 2 cut(s) 347, 1041
NciI CCSGG 1 cut(s) 432
NcoI CCATGG 1 cut(s) 238
NdeI CATATG 2 cut(s) 70, 565
NdeII GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
NlaIII CATG 4 cut(s) 139, 242, 794, 950
NlaIV GGNNCC 2 cut(s) 477, 1081
NmuCI GTSAC 1 cut(s) 1280
NspI RCATGY 1 cut(s) 950
OliI CACNNNNGTG 1 cut(s) 387
PagI TCATGA 1 cut(s) 790
PciI ACATGT 1 cut(s) 946
PctI GAATGC 1 cut(s) 891
PdmI GAANNNNTTC 1 cut(s) 984
PfeI GAWTC 2 cut(s) 515, 538
PinAI ACCGGT 1 cut(s) 1384
PkrI GCNGC 2 cut(s) 198, 394
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PscI ACATGT 1 cut(s) 946
PspN4I GGNNCC 2 cut(s) 477, 1081
PspOMI GGGCCC 1 cut(s) 1079
PspPI GGNCC 2 cut(s) 1079, 1080
PstI CTGCAG 1 cut(s) 857
PstNI CAGNNNCTG 1 cut(s) 1214
PsuI RGATCY 3 cut(s) 281, 475, 637
PvuII CAGCTG 1 cut(s) 97
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 4 cut(s) 387, 951, 1035, 1152
SaqAI TTAA 7 cut(s) 269, 290, 330, 495, 860, 990, 1380
SatI GCNGC 2 cut(s) 197, 393
Sau3AI GATC 7 cut(s) 281, 475, 560, 637, 1136, 1339, 1363
Sau96I GGNCC 2 cut(s) 1079, 1080
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 2 cut(s) 1083, 1231
SfaNI GCATC 2 cut(s) 541, 1278
SfcI CTRYAG 1 cut(s) 853
SmiMI CAYNNNNRTG 4 cut(s) 387, 951, 1035, 1152
SmlI CTYRAG 3 cut(s) 202, 494, 1074
SmoI CTYRAG 3 cut(s) 202, 494, 1074
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 7 cut(s) 13, 154, 160, 804, 931, 1349, 1377
SsiI CCGC 6 cut(s) 448, 487, 607, 706, 1004, 1111
SspI AATATT 1 cut(s) 444
SspMI CTAG 3 cut(s) 228, 285, 402
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 4 cut(s) 18, 238, 572, 1179
TaaI ACNGT 7 cut(s) 45, 133, 220, 833, 896, 1226, 1337
TaiI ACGT 1 cut(s) 1168
TasI AATT 7 cut(s) 13, 154, 160, 804, 931, 1349, 1377
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 515, 538
Tru1I TTAA 7 cut(s) 269, 290, 330, 495, 860, 990, 1380
Tru9I TTAA 7 cut(s) 269, 290, 330, 495, 860, 990, 1380
TscAI CASTG 3 cut(s) 700, 1229, 1342
TseFI GTSAC 1 cut(s) 1280
TseI GCWGC 2 cut(s) 196, 392
Tsp45I GTSAC 1 cut(s) 1280
TspDTI ATGAA 5 cut(s) 57, 779, 1130, 1386, 1421
TspGWI ACGGA 4 cut(s) 93, 563, 736, 1023
TspRI CASTG 3 cut(s) 700, 1229, 1342
Vha464I CTTAAG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 1227
XapI RAATTY 1 cut(s) 13
XceI RCATGY 1 cut(s) 950
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 984
XspI CTAG 3 cut(s) 228, 285, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.