Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Forward (+)

61365515 .. 61373939

Gene Structure 8425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG385300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 6111 bp

ATGGACCTCCCTCAGTACCTTCACCACCATCCAAGGTACGCTTCTTCCTCCTCCTCCTCTGACCCTAATTTCCCAAACTACCCTCACCGCACCACCAACCACTACCACCACCGCCACACTCCGCCTCCTCCTCCCCAACCCCAGCCCCCACAGCTCCGCCCACAATCCCCCTCCTCCTTCAAAACCCTACCCCCTCCTCCGCCGCCACCACATCCCCAAAGGACCACCTTCTCCCCCCACCCCATCGATTCCGATCATTCCAGAACCTTCTCCCCTCGCACCACTCACCGCCCGCCACCTCTCGATTCCGACCGGCCACGTCATCGCCTCTACCTCGAGTCCGGTCCGGATTACCGGGACCGGTCCAGGAACTATTCGCCGCGCGATTACGACCGCGAATTGCATAAACCCTATAGGCGCGATCCGGACGGCGGCGGCGCTAGGTTTAGATCGGAGTACGAAGAACAACGGGATCGTCGAGTTGATGACGGTTATCGCCGTCGCTCGAGCAATCACGAAACGACGACGTTTCGCGAAGTGGAGTTCCAGGATTCGGGTTCGGGTTGCTACGACGAGAGCGCGTATGAGGAGCTGCTGAAGAGTGGGAGGAGATATGAGGCGTATGAGATTCAAAGGTGGGGTCTTGAGAGGGCCCAATCGGAGGAGGATTTGTACGATCCTTTCGAATTGGATGAGCACGATGAGGAGGAGGATCGGATTGTTTCGGAGAAGAGGGATTATTATGGTTCCGAATCAGGAAGAAGTAGTGGTACTAGTAGGTGGAAGCAGATACAAAAGAAGAGTGCTTTGCTTAGGCTTCAAACCCCGAAAACCCGGGACCGGAATTACTCTGCTTATTACGATAGTTCCGGCTCCTCCGGTGGATCATTCAGAGGGAAAGAACAGTATGAGTATGAGTATTCAGGTCATGGGAGGAAGGATGCAGTAGAAGAAGAGAGGCGTGGTGGTGGAGGAGAAGAGAGAGGCCAACAACAGAGAGGTGGGAGTAGTCCTCTGGACCTTGATGTCTCGTTTAAGTCGAATTCGCTGGTAGCCAAGCCGGTTAGAACTAGGGATGAGAAGAGAGGTTCAGTTTCGGATATGGATTGTTCAGAGTCACCACCTGCTAAGCTCCGTGAGGATGTTGTAAATTTGGATAGTTTGGCACTTGTTTCGAATAAGACATCGAGTCCTGGCAAGGAGGCCATGAAGTTGAAAGGAGAAGTTACTACTTCTGGCATGAATTCACAGCCTTGTTCTGTTGTGACTGATGATGCGTTTGTAAAGAGTGAAGTGGAAACAGCACCCAAGGGCAAGATTTTACGTAAAGATGGCAAGGATGTTGGTTCCAGTCAGAAGTCTTCTCCCAACGTTTCTAAGAAGACAAAAGTAGTGAAGAAAATAGTGGCCAAGAAGACAGTGAAAAAGGTCACAAACCCCCCCACTTCACAGCCAGAAAGTAAGATTGATGAGCCGGGGACGAGTACTGTTCACAGTCTATTTGCAGGCACTGGCAAAGGTGAAACCTCTTCCATTTCTGATCCTTGTCCAAATGATCTGCATGTGTTGCCTGTAGATAAGGAAGTAGAAGGTTCTCTGCCGAATGTTCTATCAGATGAATATGGCACTGTTCTCAACTCTTGTAGTAAGAATATTGGGAACAACTCAAGTGCAAATTTGGGCTCTTTGAGTCCTGCAGAGATTAATACTGATCAGAAGCACCCTCTGAATGTAGATACTCCGGTCAAGGGCTTGCTTACCATTTCAAATTTTAACAGCAATGCAACTGATTCAATCAAGGTAGCTACTTGTCCTGAAACTGGCGGTGTTGTGGATGTCAGCAAATCGATCTGTCAGAGTGGAAACATTTTATTGGTTGATAAAGATGTACAAAAAGAATCATCACAGGCCATGTTGGCTGTAGAAGGCAATTTGAGCTCTGGTTTTTTAAATTCAGATAAGATGCATGAGCTCACGAATGTAAAGGGTTCTGAACATGGGGCTGAAACCTTGGAGAAACTGTCACATCAGGAAATCATTGTTCCTGATGTTGGCACTGTGGATGCAGTTAGCGAACAACCTTGTAGATATCAGCTCCCCACATCACTTCAAAATGGTGGTGTTGTGGAAGAACTTCCTAAGGCTATATCTTCAGCAGAAAATAATATGGCGGTTGGTTTATCGAGTTCAGGGGAGACCAAAGCTGTCCGCTCCAAGATTGGTAGACGTACAAGGTGGGATTCTGATGAAGTTTATGTTAAGAAAGATAAGAGCATTACAGTTTCCAATGGTGGGAATACCAATTCTTTTGGCAAGCAGTCATCACCTGATTGTGCCTCTAGATCTTTTGAAATTTGTGCCACAGAAAGATCTCCAAATATACCAAAATCAGTTGGAGATACTCATAGTGTTACACCTATGATTCAAAAGAAGAGAAAAGTTAAAACGCAGTTAGACTTTTCAAGGATATCCGACACTTGTGTAGACCCTGTAAATGTTTCTCCCTGCAAAGATGCACCGGATACAACAGTAAGTTCCTTCCTGAAGGATCCTAGTCATGCAGAAGTTTCTGTTTCTGGTGTTCAAAAGTTAGATATGGGATCACAGCCTGGTAATGATTGGGTCAGCGTTCTGAATGGGAAAAGTTCAGTAAATGGGTTTTCTGACACTCAGCTTTCAGCTAGAATTGATGCTAACTATGATACAAATGAGACTTCACCCGAGTATTCAAAGAGGAGAAAAGTGTCTGGCACTCATCTGGTATTGACTTCAGCTCAAACCAATGGAGGACCTGCAAATAAATCTACATCTTATATACAGGAATCTTCAACTCATAATGATGTTCCAACATATCAAGTGGACAAAGGTGCTTCTTCTAGCATAGGTTCTCAGTGTGCTACTTCTAATTTAATTCCATCTCCTGAGGAAATCAATGTCTATCTTGAGGACATTATGGCTGCAGTATCATCTGATACTGTAGCTGCAGCTAGGGACTCCTTTACTAATGATGATATGAAGATTAAGCACCAAGGTATTGACTCTTCTTCAGTTTCTGAAGGGTCAGGTATTCCACATATGCAAATCCCTTGTCCTTTACAATCACAGAATGAGGATAAAGAGGATGGTACTGAAGTTATGGTTGTAAATAATCATCACCTTGACATTTTGGATATAGATGGTAGTGATGAAAAAGACTTTGATGTTTGTGCAACAAATGAGCACATTATGGTTCAAGGTGAGACTGCTCCATGTACAATTCATTCAGAGCTTCAGCCTGCTGATTTGGGTATTAATTCTTTCAGTACAAATATAGAATCAGATTACCTCTGTGTTAAGGATAAACTGCCTTTTGTGCCAAGTTGTCTGCTTTCAATTGCTAATGACAATGAAGTAACTTCTACCAACTCTATTGATGAAGGCATGAAGTCTGTGTCTGATACGCTGTCAGATACAGGTACTCCAGAAACTTCAACTAGTATCACTGACGTGCATATGCTGATTTGTAATCCTTCGGTTATTAAAAGTTTTGACGAAAAAGTTTGTGCGGATGACCAGAAATTTGAGGTGAAGTCTGAGGTTGCATCCGCTGGGAATTTATTCTCAGAGACCAAAACTAATTTAACATTAGGTAATGTAACTGAAGGTCACCAATCAGTCACAGAGAAGGCAGTACCTTTGAAATTGCAGGATTCCAAAAAGACATCTCATGGTCTGCATCTCATAAGTGCTGAATCTGCATTGAAGAACCAGCTGGGTCAAGCTACTCATAGGATTGTTCCAGGTCGTCCATTTTCTGCCTTTACTACCTCACAGAAGGCTACCTCTTCAACACATATATCAAAGCCTCGGACTTGGCATCGAAATGCTAATTCATCTGTATCTCCTCTTCCTGTGAGTACTCTTCCACCTCAAAGGCAGTTGCCACAAAGAAATGGAAAACTTGAAAGTAATTCTTATGTTCGTAAAGGTAACACCCTTGTTAGAAGACGTGCTACAATTGCTGCTGTACCACAAAGCTCTCAAGGTCTCAGTTCATCTGTTCATCAGTTGAACTTTTCAGGTATAGATGGATTGAAGAAGAATGCAGGATCCGACAGTAGGGTTGACATTAAAAACCCTCCAAAAACAGGAGGACTCAATGCTTCTTCAGATAGGCCCCCAGCCCCACTACCCGGTGGAGCCAAAATGTCTGCATCTGCTGCCGTCTCTTCCGGGATTCCTACATCATCCCCACTAGCTGAGCCTCTTCTTAGTGATATCTCTGGAACTAAATCAGATCCTATGAATTGTTCGGAAACGAAAGATGCAGAAGGATCAGTCAAGGACTCGCTGGCAACTTCTGATACTCAGGAATACCATAGTGGTCCAGTCAACAATCTACATGATGGGAATCTGGCATCATCAAATATGAAGAAGGTTATATATGTAAAGCGAAAATTAAATCAGTTGGTTGCATCATCTTCAAATCCATCAGACCTTTCTGTCCACAATGCTGATAAGAACCAACCCTCAGATGGCTACTACAAGAGGCGCAAACATCAGCTAATTAGGTCTTCTTTGGAAAGTAATGGCAAAGATACTGTTCTCCTGCCCACTGACAATCTAAACTCAGGGGAGCAAAAGGCTCGTAAGGTTATCCCCAGTAGAACATTTAACAAGAAGCGATCACTTAAGGCTGTTGCGAGGATGAGTAAAAAGAATTCTTTGGTCTGGACACCAAGTGGTACACAGTCATCAAATAATAATGGTAGTTCATATGACCATCAGAAGGTTCTGCCTCAGCTGTTTCCGTGGAAAAGAGCAAGATACTGGAGAACTGTCATGCAAAGTCAGGCTTCCAATTTCAATTATAGTTCCTCATCAACAATCAGTAAAAAGTTGTTGCTCTCAAGGATGAGGGATACTGTATACACTAGGTCAACCCATGGATTTTCACTTAGAAAGTACAAGGTATTAAGTGTTGGTGGATCTAGTTTAAAATGGTCAAAATCCATTGAAAGTCGCTCAAAGAAAGTTAATGAGGAAGCTACACGGGCTGTTGCTGAAGTAGAGAAGAAGAAAAGAGAACACAATGGTGCTGCCTGCACTAGTTCTGGTTCTAAAATCAGAAACTCACCGGGAAAACGAATATTCCGCATTGGCTCTGTTCGTTACAAAATGGATCCTTCAAGGCGGACACTTAAGAGGATTTCAGATGACGAATCCTCAAAGTCTGTTGTGCTGAATCCAGAAACGGATGCCAAGAGATCATATGTTCCAAGGAGATTGGTGATTGGGAATGACGAATATGTGCGGATTGGAAATGGTAATCAGCTTATTAGAGATCCAAAGAAACGAACTCGCATATTGGCAAGTGAAAGAGTTAGATGGAGTTTGCACACTGCCAGACAGCGGTTGGCAAAAAAACGGAAATACTGCCAGTTTTTCACACGATTTGGGAAGTGTAACAAGGATGATGGAAAATGTCCCTATATTCATGACTCCTCCAAAATTGCAGTCTGCACAAAGTATCTGAACGGTTTATGTTCCAACCCCAACTGCAGATTAACCCACAAGGTCATTCCAGAAAGAATGCCAGACTGTTCTTTCTTTCTGCAAGGTTTATGCACCAATAAAAATTGTTCTTACAGACATGTAAATGTAAATCCGAAGGCATCTACTTGTGAAGGATTTCTTAAAGGTTATTGTGCGGACGGAAATGAGTGCCGGAAGAAGCACAGCTATGTCTGCCAGACTTTTGAAGAAACAGGAACGTGTCCTCAAGGGCCCAAATGCAAGCTTCACCACCCCAAAAAGCGTATGAAGGGAAAGATAAAGAAACGATCAAGAGAACATAGAAATGGTTGGGGACGTTACTTTGTTTCCAAGGATGTTGGTGTTTCTGAGCCCGTCACAGCGTCTGCAAAGCACTGTGCACAAAATGGTGATGACATATTTGGTAATGATTTCGTTAGCATCAATGTTAGTGACGAGGAGGCTGGAGAAAGTAATAATCCACCTGAGCAAACCACATTTTATGACAGTGATCCCTCTGAATTAGACTTGGATGATCTTGATGAACTAATTAAACCGATTCGTTTGTTGAATAAGATGAAGACAAACATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

2036

Amino Acids

224.21

Weight (kDa)

8.81

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1132
AasI	GACNNNNNNGTC	2 cut(s)	1025, 4481
Acc36I	ACCTGC	2 cut(s)	1132, 2800
AccBSI	CCGCTC	1 cut(s)	2211
AccI	GTMKAC	3 cut(s)	2224, 2484, 4908
AccII	CGCG	6 cut(s)	382, 384, 396, 420, 534, 581
AccIII	TCCGGA	2 cut(s)	346, 424
AclI	AACGTT	1 cut(s)	1371
AcoI	YGGCCR	2 cut(s)	314, 1407
AdeI	CACNNNGTG	1 cut(s)	4721
AflII	CTTAAG	2 cut(s)	4670, 5180
AflIII	ACRYGT	2 cut(s)	5632, 5753
AgeI	ACCGGT	1 cut(s)	360
AhdI	GACNNNNNGTC	1 cut(s)	1188
AhlI	ACTAGT	3 cut(s)	773, 3473, 5087
AjiI	CACGTC	3 cut(s)	320, 3487, 3989
AjnI	CCWGG	5 cut(s)	365, 546, 1192, 2608, 3778
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AleI	CACNNNNGTG	2 cut(s)	3485, 5073
Alw21I	GWGCWC	5 cut(s)	699, 1940, 1974, 3222, 5917
Alw26I	GTCTC	7 cut(s)	1033, 2189, 2705, 3233, 3599, 4031, 4210
Alw44I	GTGCAC	1 cut(s)	5913
AlwNI	CAGNNNCTG	3 cut(s)	1511, 3053, 5900
Ama87I	CYCGRG	4 cut(s)	335, 505, 834, 2720
Aor13HI	TCCGGA	2 cut(s)	346, 424
AoxI	GGCC	8 cut(s)	314, 651, 985, 1203, 1407, 1908, 4154, 5765
ApaI	GGGCCC	2 cut(s)	655, 5769
ApaLI	GTGCAC	1 cut(s)	5913
ApeKI	GCWGC	7 cut(s)	592, 2957, 2981, 2984, 4001, 4199, 5078
ArsI	GACNNNNNNTTYG	8 cut(s)	625, 657, 3073, 3105, 3542, 3574, 5481, 5513
AseI	ATTAAT	2 cut(s)	1704, 3291
AsiGI	ACCGGT	1 cut(s)	360
Asp700I	GAANNNNTTC	3 cut(s)	2133, 3596, 5670
AspLEI	GCGC	5 cut(s)	384, 420, 440, 581, 4533
AsuC2I	CCSGG	7 cut(s)	356, 835, 836, 1476, 4173, 4213, 5118
AsuII	TTCGAA	2 cut(s)	684, 1175
AvaI	CYCGRG	4 cut(s)	335, 505, 834, 2720
AvaII	GGWCC	9 cut(s)	4, 222, 344, 358, 363, 838, 1018, 2789, 4364
AxyI	CCTNAGG	2 cut(s)	2139, 2922
BaeGI	GKGCMC	3 cut(s)	655, 5769, 5917
BaeI	ACNNNNGTAYC	6 cut(s)	1728, 1761, 2514, 2547, 3117, 3150
BalI	TGGCCA	1 cut(s)	1409
BamHI	GGATCC	3 cut(s)	2548, 4088, 5161
BanII	GRGCYC	6 cut(s)	655, 1685, 1940, 1974, 5769, 5889
BarI	GAAGNNNNNNTAC	8 cut(s)	754, 786, 3025, 3057, 3870, 3902, 3976, 4008
BbsI	GAAGAC	6 cut(s)	1353, 1388, 1421, 3991, 4545, 6101
Bbv12I	GWGCWC	5 cut(s)	699, 1940, 1974, 3222, 5917
BbvCI	CCTCAGC	1 cut(s)	4779
BbvI	GCAGC	7 cut(s)	579, 2944, 2968, 2996, 3988, 4186, 5065
BceAI	ACGGC	3 cut(s)	445, 483, 4187
BcgI	CGANNNNNNTGC	4 cut(s)	1155, 1189, 4607, 4641
BciT130I	CCWGG	5 cut(s)	367, 548, 1194, 2610, 3780
BciVI	GTATCC	2 cut(s)	2515, 4894
BclI	TGATCA	1 cut(s)	1711
BcnI	CCSGG	7 cut(s)	356, 835, 836, 1476, 4173, 4213, 5118
BcoDI	GTCTC	7 cut(s)	1033, 2189, 2705, 3233, 3599, 4031, 4210
BcuI	ACTAGT	3 cut(s)	773, 3473, 5087
BfmI	CTRYAG	8 cut(s)	412, 1572, 1695, 1920, 2958, 2976, 2982, 5539
BfoI	RGCGCY	1 cut(s)	441
BfrI	CTTAAG	2 cut(s)	4670, 5180
BfuAI	ACCTGC	2 cut(s)	1132, 2800
BfuI	GTATCC	2 cut(s)	2515, 4894
BglI	GCCNNNNNGGC	1 cut(s)	1916
BglII	AGATCT	2 cut(s)	2342, 2369
BlpI	GCTNAGC	2 cut(s)	1128, 4239
BmcAI	AGTACT	2 cut(s)	1486, 3898
Bme18I	GGWCC	9 cut(s)	4, 222, 344, 358, 363, 838, 1018, 2789, 4364
BmeRI	GACNNNNNGTC	1 cut(s)	1188
BmeT110I	CYCGRG	4 cut(s)	335, 505, 834, 2720
BmgBI	CACGTC	3 cut(s)	320, 3487, 3989
BmrI	ACTGGG	1 cut(s)	4635
BmuI	ACTGGG	1 cut(s)	4635
BpiI	GAAGAC	6 cut(s)	1353, 1388, 1421, 3991, 4545, 6101
BplI	GAGNNNNNCTC	2 cut(s)	997, 1029
BpmI	CTGGAG	3 cut(s)	3444, 4831, 6000
Bpu10I	CCTNAGC	3 cut(s)	812, 4779, 6000
Bpu1102I	GCTNAGC	2 cut(s)	1128, 4239
Bpu14I	TTCGAA	2 cut(s)	684, 1175
BpuEI	CTTGAG	6 cut(s)	665, 1651, 2963, 4005, 4873, 5745
BpuMI	CCSGG	7 cut(s)	356, 835, 836, 1476, 4173, 4213, 5118
Bsa29I	ATCGAT	2 cut(s)	246, 1847
BsaAI	YACGTR	1 cut(s)	1325
BsaBI	GATNNNNATC	2 cut(s)	252, 4389
BsaI	GGTCTC	3 cut(s)	2189, 3599, 4031
BsaWI	WCCGGW	8 cut(s)	341, 346, 360, 424, 840, 878, 1741, 2518
BsaXI	ACNNNNNCTCC	8 cut(s)	109, 139, 656, 686, 2006, 2036, 3442, 3472
Bse118I	RCCGGY	3 cut(s)	312, 360, 1060
Bse1I	ACTGG	7 cut(s)	1350, 1516, 1825, 4367, 4641, 4814, 5419
Bse21I	CCTNAGG	2 cut(s)	2139, 2922
Bse3DI	GCAATG	1 cut(s)	1786
Bse8I	GATNNNNATC	2 cut(s)	252, 4389
BseAI	TCCGGA	2 cut(s)	346, 424
BseBI	CCWGG	5 cut(s)	367, 548, 1194, 2610, 3780
BseCI	ATCGAT	2 cut(s)	246, 1847
BseJI	GATNNNNATC	2 cut(s)	252, 4389
BseMI	GCAATG	1 cut(s)	1786
BseNI	ACTGG	7 cut(s)	1350, 1516, 1825, 4367, 4641, 4814, 5419
BseSI	GKGCMC	3 cut(s)	655, 5769, 5917
BseXI	GCAGC	7 cut(s)	579, 2944, 2968, 2996, 3988, 4186, 5065
BseYI	CCCAGC	4 cut(s)	141, 3587, 3751, 4159
BsgI	GTGCAG	2 cut(s)	5068, 5485
Bsh1236I	CGCG	6 cut(s)	382, 384, 396, 420, 534, 581
Bsh1285I	CGRYCG	2 cut(s)	313, 394
BshFI	GGCC	8 cut(s)	316, 653, 987, 1205, 1409, 1910, 4156, 5767
BshTI	ACCGGT	1 cut(s)	360
BshVI	ATCGAT	2 cut(s)	246, 1847
BsiEI	CGRYCG	2 cut(s)	313, 394
BsiHKAI	GWGCWC	5 cut(s)	699, 1940, 1974, 3222, 5917
BsiHKCI	CYCGRG	4 cut(s)	335, 505, 834, 2720
BslFI	GGGAC	6 cut(s)	371, 851, 1492, 3005, 5451, 5862
BsmAI	GTCTC	7 cut(s)	1033, 2189, 2705, 3233, 3599, 4031, 4210
BsmBI	CGTCTC	1 cut(s)	4210
BsmFI	GGGAC	6 cut(s)	371, 851, 1492, 3005, 5451, 5862
BsmI	GAATGC	2 cut(s)	4087, 5577
BsnI	GGCC	8 cut(s)	316, 653, 987, 1205, 1409, 1910, 4156, 5767
Bso31I	GGTCTC	3 cut(s)	2189, 3599, 4031
BsoBI	CYCGRG	4 cut(s)	335, 505, 834, 2720
Bsp119I	TTCGAA	2 cut(s)	684, 1175
Bsp120I	GGGCCC	2 cut(s)	651, 5765
Bsp1286I	GDGCHC	9 cut(s)	655, 699, 1685, 1940, 1974, 3222, 5769, 5889, 5917
Bsp13I	TCCGGA	2 cut(s)	346, 424
Bsp1407I	TGTACA	2 cut(s)	1888, 3251
Bsp1720I	GCTNAGC	2 cut(s)	1128, 4239
Bsp19I	CCATGG	1 cut(s)	4924
Bsp68I	TCGCGA	1 cut(s)	534
BspANI	GGCC	8 cut(s)	316, 653, 987, 1205, 1409, 1910, 4156, 5767
BspDI	ATCGAT	2 cut(s)	246, 1847
BspEI	TCCGGA	2 cut(s)	346, 424
BspFNI	CGCG	6 cut(s)	382, 384, 396, 420, 534, 581
BspHI	TCATGA	1 cut(s)	5476
BspMAI	CTGCAG	4 cut(s)	1699, 2962, 2986, 5543
BspMI	ACCTGC	2 cut(s)	1132, 2800
BspT104I	TTCGAA	2 cut(s)	684, 1175
BspTI	CTTAAG	2 cut(s)	4670, 5180
BspTNI	GGTCTC	3 cut(s)	2189, 3599, 4031
BsrBI	CCGCTC	1 cut(s)	2211
BsrDI	GCAATG	1 cut(s)	1786
BsrFI	RCCGGY	3 cut(s)	312, 360, 1060
BsrGI	TGTACA	2 cut(s)	1888, 3251
BsrI	ACTGG	7 cut(s)	1350, 1516, 1825, 4367, 4641, 4814, 5419
BssAI	RCCGGY	3 cut(s)	312, 360, 1060
BssNAI	GTATAC	1 cut(s)	4909
BssT1I	CCWWGG	7 cut(s)	32, 1308, 2010, 3028, 4924, 5258, 5865
Bst1107I	GTATAC	1 cut(s)	4909
Bst2UI	CCWGG	5 cut(s)	367, 548, 1194, 2610, 3780
BstAFI	CTTAAG	2 cut(s)	4670, 5180
BstAPI	GCANNNNNTGC	2 cut(s)	1567, 4199
BstAUI	TGTACA	2 cut(s)	1888, 3251
BstBAI	YACGTR	1 cut(s)	1325
BstBI	TTCGAA	2 cut(s)	684, 1175
BstC8I	GCNNGC	8 cut(s)	293, 1507, 1754, 2315, 3276, 4332, 5083, 5777
BstDSI	CCRYGG	2 cut(s)	4790, 4924
BstEII	GGTNACC	1 cut(s)	3644
BstFNI	CGCG	6 cut(s)	382, 384, 396, 420, 534, 581
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	5 cut(s)	384, 420, 440, 581, 4533
BstMAI	GTCTC	7 cut(s)	1033, 2189, 2705, 3233, 3599, 4031, 4210
BstMCI	CGRYCG	2 cut(s)	313, 394
BstNI	CCWGG	5 cut(s)	367, 548, 1194, 2610, 3780
BstNSI	RCATGY	2 cut(s)	1565, 5636
BstPI	GGTNACC	1 cut(s)	3644
BstSFI	CTRYAG	8 cut(s)	412, 1572, 1695, 1920, 2958, 2976, 2982, 5539
BstSLI	GKGCMC	3 cut(s)	655, 5769, 5917
BstSNI	TACGTA	1 cut(s)	1325
BstUI	CGCG	6 cut(s)	382, 384, 396, 420, 534, 581
BstV1I	GCAGC	7 cut(s)	579, 2944, 2968, 2996, 3988, 4186, 5065
BstV2I	GAAGAC	6 cut(s)	1353, 1388, 1421, 3991, 4545, 6101
BstX2I	RGATCY	8 cut(s)	2342, 2369, 2548, 4088, 4276, 4967, 5161, 5323
BstYI	RGATCY	8 cut(s)	2342, 2369, 2548, 4088, 4276, 4967, 5161, 5323
BstZ17I	GTATAC	1 cut(s)	4909
Bsu15I	ATCGAT	2 cut(s)	246, 1847
Bsu36I	CCTNAGG	2 cut(s)	2139, 2922
BsuI	GTATCC	2 cut(s)	2515, 4894
BsuRI	GGCC	8 cut(s)	316, 653, 987, 1205, 1409, 1910, 4156, 5767
BsuTUI	ATCGAT	2 cut(s)	246, 1847
BtgI	CCRYGG	2 cut(s)	4790, 4924
BtgZI	GCGATG	1 cut(s)	308
BtrI	CACGTC	3 cut(s)	320, 3487, 3989
BtsI	GCAGTG	1 cut(s)	5379
BtuMI	TCGCGA	1 cut(s)	534
BveI	ACCTGC	2 cut(s)	1132, 2800
Cac8I	GCNNGC	8 cut(s)	293, 1507, 1754, 2315, 3276, 4332, 5083, 5777
CaiI	CAGNNNCTG	3 cut(s)	1511, 3053, 5900
CciI	TCATGA	1 cut(s)	5476
CfoI	GCGC	5 cut(s)	384, 420, 440, 581, 4533
Cfr10I	RCCGGY	3 cut(s)	312, 360, 1060
Cfr9I	CCCGGG	1 cut(s)	834
ClaI	ATCGAT	2 cut(s)	246, 1847
CpoI	CGGWCCG	1 cut(s)	344
CseI	GACGC	1 cut(s)	5886
CspAI	ACCGGT	1 cut(s)	360
CspI	CGGWCCG	1 cut(s)	344
DraI	TTTAAA	2 cut(s)	1950, 4977
DraIII	CACNNNGTG	1 cut(s)	4721
DrdI	GACNNNNNNGTC	2 cut(s)	1025, 4481
DriI	GACNNNNNGTC	1 cut(s)	1188
DseDI	GACNNNNNNGTC	2 cut(s)	1025, 4481
EaeI	YGGCCR	2 cut(s)	314, 1407
Eam1105I	GACNNNNNGTC	1 cut(s)	1188
EciI	GGCGGA	4 cut(s)	111, 146, 189, 5188
Ecl136II	GAGCTC	2 cut(s)	1938, 1972
Eco105I	TACGTA	1 cut(s)	1325
Eco130I	CCWWGG	7 cut(s)	32, 1308, 2010, 3028, 4924, 5258, 5865
Eco24I	GRGCYC	6 cut(s)	655, 1685, 1940, 1974, 5769, 5889
Eco31I	GGTCTC	3 cut(s)	2189, 3599, 4031
Eco32I	GATATC	3 cut(s)	2090, 2469, 4258
Eco47I	GGWCC	9 cut(s)	4, 222, 344, 358, 363, 838, 1018, 2789, 4364
Eco53kI	GAGCTC	2 cut(s)	1938, 1972
Eco81I	CCTNAGG	2 cut(s)	2139, 2922
Eco88I	CYCGRG	4 cut(s)	335, 505, 834, 2720
Eco91I	GGTNACC	1 cut(s)	3644
EcoICRI	GAGCTC	2 cut(s)	1938, 1972
EcoO109I	RGGNCCY	4 cut(s)	651, 2789, 4155, 5765
EcoO65I	GGTNACC	1 cut(s)	3644
EcoRI	GAATTC	3 cut(s)	1042, 1243, 4699
EcoRII	CCWGG	5 cut(s)	365, 546, 1192, 2608, 3778
EcoRV	GATATC	3 cut(s)	2090, 2469, 4258
EcoT14I	CCWWGG	7 cut(s)	32, 1308, 2010, 3028, 4924, 5258, 5865
EcoT22I	ATGCAT	1 cut(s)	1968
EcoT38I	GRGCYC	6 cut(s)	655, 1685, 1940, 1974, 5769, 5889
ErhI	CCWWGG	7 cut(s)	32, 1308, 2010, 3028, 4924, 5258, 5865
Esp3I	CGTCTC	1 cut(s)	4210
FalI	AAGNNNNNCTT	8 cut(s)	25, 57, 3937, 3969, 4819, 4851, 5658, 5690
FaqI	GGGAC	6 cut(s)	371, 851, 1492, 3005, 5451, 5862
FauI	CCCGC	1 cut(s)	300
FauNDI	CATATG	4 cut(s)	3075, 3492, 4756, 5251
FbaI	TGATCA	1 cut(s)	1711
FblI	GTMKAC	3 cut(s)	2224, 2484, 4908
FriOI	GRGCYC	6 cut(s)	655, 1685, 1940, 1974, 5769, 5889
GlaI	GCGC	5 cut(s)	383, 419, 439, 580, 4532
GsaI	CCCAGC	4 cut(s)	145, 3591, 3755, 4163
GsuI	CTGGAG	3 cut(s)	3444, 4831, 6000
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	8 cut(s)	316, 653, 987, 1205, 1409, 1910, 4156, 5767
HgaI	GACGC	1 cut(s)	5886
HhaI	GCGC	5 cut(s)	384, 420, 440, 581, 4533
Hin6I	GCGC	5 cut(s)	382, 418, 438, 579, 4531
HinP1I	GCGC	5 cut(s)	382, 418, 438, 579, 4531
HincII	GTYRAC	3 cut(s)	4105, 4372, 4920
HindII	GTYRAC	3 cut(s)	4105, 4372, 4920
HindIII	AAGCTT	1 cut(s)	5777
Hpy99I	CGWCG	5 cut(s)	480, 504, 526, 529, 575
HpyCH4IV	ACGT	9 cut(s)	319, 527, 1324, 1371, 2227, 3486, 3988, 5753, 5851
HpySE526I	ACGT	9 cut(s)	319, 527, 1324, 1371, 2227, 3486, 3988, 5753, 5851
HspAI	GCGC	5 cut(s)	382, 418, 438, 579, 4531
Kpn2I	TCCGGA	2 cut(s)	346, 424
Ksp22I	TGATCA	1 cut(s)	1711
LmnI	GCTCC	9 cut(s)	159, 589, 878, 1137, 2100, 2216, 3250, 4178, 4615
Lsp1109I	GCAGC	7 cut(s)	579, 2944, 2968, 2996, 3988, 4186, 5065
MaeII	ACGT	9 cut(s)	319, 527, 1324, 1371, 2227, 3486, 3988, 5753, 5851
MbiI	CCGCTC	1 cut(s)	2211
MfeI	CAATTG	2 cut(s)	3372, 3996
MflI	RGATCY	8 cut(s)	2342, 2369, 2548, 4088, 4276, 4967, 5161, 5323
MhlI	GDGCHC	9 cut(s)	655, 699, 1685, 1940, 1974, 3222, 5769, 5889, 5917
MlsI	TGGCCA	1 cut(s)	1409
MluNI	TGGCCA	1 cut(s)	1409
MlyI	GAGTC	9 cut(s)	347, 1124, 1198, 1699, 2987, 3032, 4128, 4319, 5474
MmeI	TCCRAC	6 cut(s)	333, 2374, 2496, 2870, 4116, 5553
Mox20I	TGGCCA	1 cut(s)	1409
Mph1103I	ATGCAT	1 cut(s)	1968
MroI	TCCGGA	2 cut(s)	346, 424
MroXI	GAANNNNTTC	3 cut(s)	2133, 3596, 5670
MscI	TGGCCA	1 cut(s)	1409
MslI	CAYNNNNRTG	7 cut(s)	2838, 3485, 3861, 5073, 5637, 5721, 5838
Msp20I	TGGCCA	1 cut(s)	1409
MspA1I	CMGCKG	4 cut(s)	3587, 3751, 4783, 5392
MspCI	CTTAAG	2 cut(s)	4670, 5180
MunI	CAATTG	2 cut(s)	3372, 3996
Mva1269I	GAATGC	2 cut(s)	4087, 5577
MvaI	CCWGG	5 cut(s)	367, 548, 1194, 2610, 3780
MvnI	CGCG	6 cut(s)	382, 384, 396, 420, 534, 581
NciI	CCSGG	7 cut(s)	356, 835, 836, 1476, 4173, 4213, 5118
NcoI	CCATGG	1 cut(s)	4924
NdeI	CATATG	4 cut(s)	3075, 3492, 4756, 5251
NmuCI	GTSAC	8 cut(s)	1116, 1264, 1429, 2022, 3644, 3655, 5890, 5966
NruI	TCGCGA	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	1968
NspI	RCATGY	2 cut(s)	1565, 5636
NspV	TTCGAA	2 cut(s)	684, 1175
OliI	CACNNNNGTG	2 cut(s)	3485, 5073
PaeR7I	CTCGAG	2 cut(s)	335, 505
PagI	TCATGA	1 cut(s)	5476
PaqCI	CACCTGC	1 cut(s)	1132
PciI	ACATGT	1 cut(s)	5632
PcsI	WCGNNNNNNNCGW	3 cut(s)	475, 681, 1037
PctI	GAATGC	2 cut(s)	4087, 5577
PdmI	GAANNNNTTC	3 cut(s)	2133, 3596, 5670
PfoI	TCCNGGA	3 cut(s)	365, 546, 4211
PinAI	ACCGGT	1 cut(s)	360
PleI	GAGTC	9 cut(s)	346, 1123, 1197, 1698, 2987, 3032, 4128, 4319, 5474
PpsI	GAGTC	9 cut(s)	346, 1123, 1197, 1698, 2987, 3032, 4128, 4319, 5474
Ppu21I	YACGTR	1 cut(s)	1325
PpuMI	RGGWCCY	1 cut(s)	2789
PscI	ACATGT	1 cut(s)	5632
PshBI	ATTAAT	2 cut(s)	1704, 3291
Psp124BI	GAGCTC	2 cut(s)	1940, 1974
Psp1406I	AACGTT	1 cut(s)	1371
Psp5II	RGGWCCY	1 cut(s)	2789
Psp6I	CCWGG	5 cut(s)	365, 546, 1192, 2608, 3778
PspEI	GGTNACC	1 cut(s)	3644
PspFI	CCCAGC	4 cut(s)	141, 3587, 3751, 4159
PspGI	CCWGG	5 cut(s)	365, 546, 1192, 2608, 3778
PspOMI	GGGCCC	2 cut(s)	651, 5765
PspPPI	RGGWCCY	1 cut(s)	2789
PspXI	VCTCGAGB	2 cut(s)	335, 505
PstI	CTGCAG	4 cut(s)	1699, 2962, 2986, 5543
PstNI	CAGNNNCTG	3 cut(s)	1511, 3053, 5900
PsuI	RGATCY	8 cut(s)	2342, 2369, 2548, 4088, 4276, 4967, 5161, 5323
PvuII	CAGCTG	2 cut(s)	3751, 4783
RruI	TCGCGA	1 cut(s)	534
RseI	CAYNNNNRTG	7 cut(s)	2838, 3485, 3861, 5073, 5637, 5721, 5838
Rsr2I	CGGWCCG	1 cut(s)	344
RsrII	CGGWCCG	1 cut(s)	344
SacI	GAGCTC	2 cut(s)	1940, 1974
ScaI	AGTACT	2 cut(s)	1486, 3898
SchI	GAGTC	9 cut(s)	347, 1124, 1198, 1699, 2987, 3032, 4128, 4319, 5474
SduI	GDGCHC	9 cut(s)	655, 699, 1685, 1940, 1974, 3222, 5769, 5889, 5917
SfcI	CTRYAG	8 cut(s)	412, 1572, 1695, 1920, 2958, 2976, 2982, 5539
Sfr274I	CTCGAG	2 cut(s)	335, 505
SfuI	TTCGAA	2 cut(s)	684, 1175
SinI	GGWCC	9 cut(s)	4, 222, 344, 358, 363, 838, 1018, 2789, 4364
SlaI	CTCGAG	2 cut(s)	335, 505
SmaI	CCCGGG	1 cut(s)	836
SmiMI	CAYNNNNRTG	7 cut(s)	2838, 3485, 3861, 5073, 5637, 5721, 5838
SnaBI	TACGTA	1 cut(s)	1325
SpeI	ACTAGT	3 cut(s)	773, 3473, 5087
SspI	AATATT	2 cut(s)	1654, 5130
SstI	GAGCTC	2 cut(s)	1940, 1974
StyI	CCWWGG	7 cut(s)	32, 1308, 2010, 3028, 4924, 5258, 5865
TaiI	ACGT	9 cut(s)	322, 530, 1327, 1374, 2230, 3489, 3991, 5756, 5854
TatI	WGTACW	6 cut(s)	1484, 1888, 3251, 3302, 3896, 4944
TauI	GCSGC	4 cut(s)	205, 382, 435, 438
TseFI	GTSAC	8 cut(s)	1116, 1264, 1429, 2022, 3644, 3655, 5890, 5966
TseI	GCWGC	7 cut(s)	592, 2957, 2981, 2984, 4001, 4199, 5078
Tsp45I	GTSAC	8 cut(s)	1116, 1264, 1429, 2022, 3644, 3655, 5890, 5966
TspGWI	ACGGA	5 cut(s)	1124, 4779, 5249, 5422, 5709
TspMI	CCCGGG	1 cut(s)	834
Vha464I	CTTAAG	2 cut(s)	4670, 5180
VneI	GTGCAC	1 cut(s)	5913
VpaK11BI	GGWCC	9 cut(s)	4, 222, 344, 358, 363, 838, 1018, 2789, 4364
VspI	ATTAAT	2 cut(s)	1704, 3291
XbaI	TCTAGA	1 cut(s)	2339
XceI	RCATGY	2 cut(s)	1565, 5636
XcmI	CCANNNNNNNNNTGG	2 cut(s)	4511, 5392
XhoI	CTCGAG	2 cut(s)	335, 505
XmaI	CCCGGG	1 cut(s)	834
XmiI	GTMKAC	3 cut(s)	2224, 2484, 4908
XmnI	GAANNNNTTC	3 cut(s)	2133, 3596, 5670
ZrmI	AGTACT	2 cut(s)	1486, 3898
Zsp2I	ATGCAT	1 cut(s)	1968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.