Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

12309964 .. 12310687

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g13510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCCTTCTCAAAAGGGAAACACTGTATTACTTGAGGATAATTTAGCAGCTGTAGCAGCAGCTAGGCATGCCCTAACTAATGATGGTCTGAATTTTAAGCACCAAGGTGTTGAATCCTGTTCAATTTATGAAGAATCAGTTCTGGATACATCTTTCCTTTGCCCATCACAATCGAGAAATGAACAGAAAGAGGCTGGTACTCAAGTTATGGTTGTAAGTAGTCATCAGCTTGACATTATGGACACAGAAAGTAACCGGGAAGAAATTTTTGATACGTTTGCAACAGATGAGCAAGTTATGATACATGGCGAGACTGCTCCATGCATTGTTTCTTTAGAGGTCCAGCTTCCAGACTCAAGCAATAAATTATCCTGCACAGACAAGGAATCAAATTATGTCTCTGTTAAGGAGAAATTGCCCGTTACATCAAATTGTCTGTTTCTATGCGCCAACGAAAATGAAGTATATACTTATAACTCTAATAATGAAGGAATGGAGTTTGTGTGTGATACAGTATCAGATAAGGGTTCTCCAGAAACTTCAATTGATGTGCCTTACTTGCAGTTGTTACCTTGTAGTCCATCAGTTATCAAAATTTCAGATGAAAAAGCTGGTGAAGTTGACCAAAAATTGGATTTGAAGTCTGTGGTTAAAGGTGGTTCAAATGCATCTGCACGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.75

Weight (kDa)

4.44

Isoelectric Point (pI)

39.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccB7I	CCANNNNNTGG	1 cut(s)	631
AcsI	RAATTY	3 cut(s)	91, 264, 594
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	113, 123, 543, 640, 663
AleI	CACNNNNGTG	1 cut(s)	105
AluBI	AGCT	5 cut(s)	50, 62, 229, 346, 611
AluI	AGCT	5 cut(s)	50, 62, 229, 346, 611
Alw26I	GTCTC	2 cut(s)	305, 403
ApeKI	GCWGC	3 cut(s)	47, 56, 59
ApoI	RAATTY	3 cut(s)	91, 264, 594
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	340
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BbvI	GCAGC	3 cut(s)	59, 68, 71
BccI	CCATC	3 cut(s)	77, 172, 589
BciVI	GTATCC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	2 cut(s)	305, 403
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	48, 57, 60
BlsI	GCNGC	3 cut(s)	49, 58, 61
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	677
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	53, 186, 340
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseXI	GCAGC	3 cut(s)	59, 68, 71
BsgI	GTGCAG	2 cut(s)	358, 657
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	305, 403
BssECI	CCNNGG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	25, 514
BstC8I	GCNNGC	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	449
BstMAI	GTCTC	2 cut(s)	305, 403
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 56, 68, 559
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	59, 68, 71
BsuI	GTATCC	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	68, 305, 321
CviJI	RGCY	6 cut(s)	50, 62, 194, 229, 346, 611
CviKI_1	RGCY	6 cut(s)	50, 62, 194, 229, 346, 611
CviQI	GTAC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	2 cut(s)	326, 670
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	3 cut(s)	71, 308, 324
FatI	CATG	3 cut(s)	67, 304, 320
Fnu4HI	GCNGC	3 cut(s)	48, 57, 60
Fsp4HI	GCNGC	3 cut(s)	48, 57, 60
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	3 cut(s)	48, 57, 60
GsuI	CTGGAG	1 cut(s)	516
HapII	CCGG	1 cut(s)	256
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	71, 308, 324
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	4 cut(s)	113, 134, 353, 386
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	3 cut(s)	90, 520, 601
Hpy188III	TCNNGA	4 cut(s)	143, 174, 350, 533
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	2 cut(s)	15, 482
HpyCH4III	ACNGT	2 cut(s)	25, 514
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	281, 324, 375, 562, 668, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 56, 68, 559
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	71, 308, 324
HspAI	GCGC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	9 cut(s)	128, 130, 180, 269, 356, 363, 385, 546, 597
Lsp1109I	GCAGC	3 cut(s)	59, 68, 71
LweI	GCATC	1 cut(s)	677
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	3 cut(s)	251, 421, 567
MboII	GAAGA	2 cut(s)	143, 272
MfeI	CAATTG	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	28, 184, 331
Mph1103I	ATGCAT	2 cut(s)	326, 670
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	3 cut(s)	96, 405, 651
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	543
MwoI	GCNNNNNNNGC	4 cut(s)	53, 56, 68, 559
NciI	CCSGG	1 cut(s)	257
NlaIII	CATG	3 cut(s)	71, 308, 324
NsiI	ATGCAT	2 cut(s)	326, 670
NspI	RCATGY	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	3 cut(s)	113, 134, 386
PflMI	CCANNNNNTGG	1 cut(s)	631
PkrI	GCNGC	3 cut(s)	49, 58, 61
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PsiI	TTATAA	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	96, 405, 651
SatI	GCNGC	3 cut(s)	48, 57, 60
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	257
SfaNI	GCATC	1 cut(s)	677
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	3 cut(s)	32, 201, 355
SmoI	CTYRAG	3 cut(s)	32, 201, 355
SphI	GCATGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	25, 514
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	113, 134, 386
Tru1I	TTAA	3 cut(s)	96, 405, 651
Tru9I	TTAA	3 cut(s)	96, 405, 651
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	3 cut(s)	47, 56, 59
TspDTI	ATGAA	5 cut(s)	144, 195, 474, 501, 618
TspRI	CASTG	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	3 cut(s)	91, 264, 594
XceI	RCATGY	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	2 cut(s)	326, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.