Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18428597 .. 18429507

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1160000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTCAATCCAGAAAAGGATCCCAAGAGATCTCATGTTACAAAGAGATTGGTGATTGGCAATGATGACTTATTAGGAATCCGAAGAAGCGAACTCGCATGTTGGCTAGTGAAAGAGTTCGATGGAGCTTGCACACGGCCAGACTGCGGTTACTGTCAGTTTTTTACAAGATTTGGGAAGTGCAATAAGGATGATGAAAAATGTCCCTATATCCATGAACCCTCTAAAGTTGCAGTCTGCACAAAGTTTCTGAAGGGTTTATGTTCCAATCCCAACTGCAAATTGTCCCATAAGGTCATTCCTGAAAGAATGCTGGACTGTTCTTACTATTTGCAAGGTGCTTTCTGCTATGTCTGCCCGTCCTTCGAATCAACTGGAGCCTGCCTACAAGGGCCCAAATGCAAGCTTCAGGACCCCAGAAACGGAACGAAGGAAAAGAAAAGGAGACGAACAAGGGAACAAAGAAATGCTTGGGGACGTTACTTTGTGTCCAAGGATGTCAATGTTCCTGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.77

Weight (kDa)

9.14

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	14, 27
AcoI	YGGCCR	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	272, 392
AfiI	CCNNNNNNNGG	2 cut(s)	146, 422
AluBI	AGCT	2 cut(s)	128, 406
AluI	AGCT	2 cut(s)	128, 406
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	14, 27
AoxI	GGCC	2 cut(s)	137, 392
ApaI	GGGCCC	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	116
AspS9I	GGNCC	3 cut(s)	392, 393, 412
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	396
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	396
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	1 cut(s)	107
BglII	AGATCT	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	3 cut(s)	392, 393, 412
BmiI	GGNNCC	4 cut(s)	21, 379, 394, 414
BpmI	CTGGAG	1 cut(s)	396
Bpu14I	TTCGAA	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 422
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	196, 502
BseLI	CCNNNNNNNGG	2 cut(s)	146, 422
BseMI	GCAATG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	396
BsgI	GTGCAG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	139, 394
BslFI	GGGAC	3 cut(s)	189, 271, 489
BslI	CCNNNNNNNGG	2 cut(s)	146, 422
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	3 cut(s)	189, 271, 489
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	139, 394
Bsp119I	TTCGAA	1 cut(s)	366
Bsp120I	GGGCCC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	2 cut(s)	19, 29
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	139, 394
BspLI	GGNNCC	4 cut(s)	21, 379, 394, 414
BspPI	GGATC	2 cut(s)	14, 27
BspT104I	TTCGAA	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	19, 29
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	155, 320
BstBI	TTCGAA	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	130, 382, 404
BstF5I	GGATG	2 cut(s)	196, 502
BstKTI	GATC	2 cut(s)	22, 32
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	2 cut(s)	19, 29
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	19, 29
BstYI	RGATCY	2 cut(s)	19, 29
BsuRI	GGCC	2 cut(s)	139, 394
BtsCI	GGATG	2 cut(s)	196, 502
Cac8I	GCNNGC	3 cut(s)	130, 382, 404
Cfr13I	GGNCC	3 cut(s)	392, 393, 412
CviAII	CATG	4 cut(s)	35, 99, 215, 516
CviJI	RGCY	6 cut(s)	106, 128, 139, 380, 394, 406
CviKI_1	RGCY	6 cut(s)	106, 128, 139, 380, 394, 406
DpnI	GATC	2 cut(s)	21, 31
DpnII	GATC	2 cut(s)	19, 29
EaeI	YGGCCR	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	492
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	272, 392
EcoO109I	RGGNCCY	2 cut(s)	392, 412
EcoT14I	CCWWGG	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	4 cut(s)	38, 102, 218, 519
FaiI	YATR	8 cut(s)	36, 100, 210, 216, 262, 291, 351, 517
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	3 cut(s)	189, 271, 489
FatI	CATG	4 cut(s)	34, 98, 214, 515
FokI	GGATG	2 cut(s)	203, 509
FriOI	GRGCYC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	139, 394
Hin1II	CATG	4 cut(s)	38, 102, 218, 519
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	78, 368
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	83, 252
Hpy188III	TCNNGA	4 cut(s)	11, 302, 410, 509
HpyAV	CCTTC	3 cut(s)	247, 373, 424
HpyCH4III	ACNGT	2 cut(s)	155, 320
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	7 cut(s)	132, 183, 233, 240, 279, 334, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	4 cut(s)	38, 102, 218, 519
Kzo9I	GATC	2 cut(s)	19, 29
LmnI	GCTCC	2 cut(s)	125, 377
LpnPI	CCDG	8 cut(s)	24, 153, 299, 315, 360, 394, 395, 430
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	3 cut(s)	37, 149, 479
MalI	GATC	2 cut(s)	21, 31
MboI	GATC	2 cut(s)	19, 29
MboII	GAAGA	1 cut(s)	96
MflI	RGATCY	2 cut(s)	19, 29
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	1 cut(s)	281
MnlI	CCTC	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	354
NdeII	GATC	2 cut(s)	19, 29
NlaIII	CATG	4 cut(s)	38, 102, 218, 519
NlaIV	GGNNCC	4 cut(s)	21, 379, 394, 414
NspI	RCATGY	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	78, 368
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
PspN4I	GGNNCC	4 cut(s)	21, 379, 394, 414
PspOMI	GGGCCC	1 cut(s)	392
PspPI	GGNCC	3 cut(s)	392, 393, 412
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	19, 29
Sau3AI	GATC	2 cut(s)	19, 29
Sau96I	GGNCC	3 cut(s)	392, 393, 412
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	130, 297, 340, 408, 481
SfuI	TTCGAA	1 cut(s)	366
SinI	GGWCC	1 cut(s)	412
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	155, 320
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	120, 366
TasI	AATT	1 cut(s)	281
TfiI	GAWTC	2 cut(s)	78, 368
TspDTI	ATGAA	2 cut(s)	210, 231
TspGWI	ACGGA	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.