Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001752

Physical Location & Seq

Genomic Coordinates Forward (+)

41278612 .. 41282855

Gene Structure 4244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGCCTCCGGGGCCGCCGCTGATTCCGTTGGAGGAGCGGCTGCTGGCGAAGCTGGCGTCGGAGTCGTGGTGGCGGAAGTGGTCGAACGGCCTTGATGGTAGCGGTGGCCGTGGGTTCATCGACTGCTTGGGTCGCCGGCTGCCTCTGATATTGACCTTGAAAGTTTTCAGAAGTTGTCAAATTGCTGCATTTGCATGTAATGTGATATTCTTGATGTTGGGGGCGGTAACTGTGGTCGGGGCCGAGCTCACGTTCGAGGCCGAAATCGGAATTCATTTTGGGTTCGCCCTCCAAAGCGTTTCGCCGAGCTCGTTGAAGGACAAGGTTTATAGGATCTTCTGCAGGGAAAAGCGTAAGCTCGCCGGTAGAAAGGATCAACAGACCGGCCTCCGATCACTTTATCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTCAGTTGATATTTTCGTTTGTGATGAAATCCCATGTTGGACATTCAATCAAAGATTGCAGCTTTGGGGTTGGTGGTGAATTGTGTATAGCTCAGTTGATTGGGTATGCTGGGATTAATTACAGCTCTCCTACTCTTGGCACGGCTATGCTCAACCTTATTCCAGCTTTCACTTTTGTACTTGCAGTTATATTCAGGAAAATTGAGCATACATTGGAAGAAACCGTCATGGAGATTGAGAATCAGGAGCTAGCAAATGCTATTCCAGAGCTAGCAAATGCTATTCCAGGGATTGATGAGGCCATGAGCTTTACAGAGATGCTAAAATTGGTTCAAACAATGTATTATTCTGTTATTGTATTTGACACTGCAATGCGTAATGAGTCAGAAAATCCGAAGATAGAACTGACTAGTTTTGGGAAGGGCTATTACTTTGAAAGCTCAGTTCGTTATGAGCTGAGAACTTTAAAATTTGCTAAAGCTTTGGTTTGGTTCTGGAAAGCTCAGTTCATTACTTTGAATTTTACTTTTTTGGCTTGCTTTTACTTTGTAATTGGACATTTTGAAAGCTCAGTTCATTATGATGGTGGTACTTTTGAAGCAAGGAGGACATTTACACATCGAAGGTTTAAGTACATATGCAAAAGAGGGAAGCCGTACACTTGGGTACCCAAGGAGTTGCATAATGTGTGGGCGGTAAAGACTCGGAAAGGATATACCCAACAACGACTTGACTACTTACAGATTTTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016973 GO:0031123 GO:0031124 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098787 GO:0098789 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

398

Amino Acids

45.2

Weight (kDa)

9.07

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArsA_ATPase	PF02374	224 - 271	1.1e-08	Anion-transporting ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580 AT1G21580
fragaria_vesca	FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950 FvH4_2g27950
malus_domestica	MD08G1160000.v1.1 MD08G1160100.v1.1 MD08G1160200.v1.1 MD15G1133400.v1.1
prunus_persica	Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1 Prupe.1G489000_v2.0.a1
pyrus_communis	pycom08g13490 pycom08g13510
rosa_chinensis	RchiOBHm_Chr6g0296771
rosa_laevigata	RLG00000011660 RLG00000013665
rosa_multiflora	Rmu_ssc0000192.1_g000011
rosa_rugosa	Rorug06G0265800 Rorug06G0265800 Rorug06G0265900 Rorug06G0266000
rosa_samantha	Rh6AG376900 Rh6AG377000 Rh6BG385300 Rh6CG390500 Rh6DG377600
rosa_wichuraiana	Rw6G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1108
AccB1I	GGYRCC	1 cut(s)	1108
AccBSI	CCGCTC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	7 cut(s)	17, 20, 40, 76, 105, 227, 1136
AclWI	GGATC	2 cut(s)	344, 384
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	3 cut(s)	273, 911, 961
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	5 cut(s)	621, 1033, 1076, 1100, 1110
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	8 cut(s)	163, 319, 489, 776, 878, 961, 1007, 1040
AhlI	ACTAGT	1 cut(s)	851
AjnI	CCWGG	1 cut(s)	727
Alw21I	GWGCWC	2 cut(s)	252, 314
AlwI	GGATC	2 cut(s)	344, 384
AoxI	GGCC	7 cut(s)	14, 91, 109, 243, 261, 388, 741
ApeKI	GCWGC	4 cut(s)	43, 142, 188, 501
ApoI	RAATTY	3 cut(s)	273, 911, 961
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	1108
AspS9I	GGNCC	2 cut(s)	14, 243
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	530
AsuNHI	GCTAGC	2 cut(s)	691, 712
BaeI	ACNNNNGTAYC	2 cut(s)	1092, 1125
BanI	GGYRCC	1 cut(s)	1108
BanII	GRGCYC	2 cut(s)	252, 314
BarI	GAAGNNNNNNTAC	2 cut(s)	854, 886
Bbv12I	GWGCWC	2 cut(s)	252, 314
BbvI	GCAGC	4 cut(s)	30, 129, 175, 513
BccI	CCATC	2 cut(s)	92, 1019
BceAI	ACGGC	4 cut(s)	96, 106, 600, 1081
BciT130I	CCWGG	1 cut(s)	729
BcnI	CCSGG	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	851
BfaI	CTAG	3 cut(s)	692, 713, 852
BfmI	CTRYAG	2 cut(s)	343, 1193
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	7 cut(s)	17, 20, 41, 44, 143, 189, 502
BlsI	GCNGC	7 cut(s)	18, 21, 42, 45, 144, 190, 503
Bme1390I	CCNGG	2 cut(s)	12, 729
BmgT120I	GGNCC	2 cut(s)	14, 243
BmiI	GGNNCC	4 cut(s)	6, 15, 244, 1110
BmrFI	CCNGG	2 cut(s)	12, 729
BmsI	GCATC	1 cut(s)	750
BmtI	GCTAGC	2 cut(s)	695, 716
BpuMI	CCSGG	1 cut(s)	12
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	11, 112, 728, 1113
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse118I	RCCGGY	3 cut(s)	138, 365, 386
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	4 cut(s)	11, 112, 728, 1113
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	5 cut(s)	548, 890, 897, 959, 1026
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	4 cut(s)	30, 129, 175, 513
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	7 cut(s)	16, 93, 111, 245, 263, 390, 743
BshNI	GGYRCC	1 cut(s)	1108
BsiHKAI	GWGCWC	2 cut(s)	252, 314
BsiSI	CCGG	4 cut(s)	11, 139, 366, 387
BslI	CCNNNNNNNGG	1 cut(s)	578
BsnI	GGCC	7 cut(s)	16, 93, 111, 245, 263, 390, 743
Bsp1286I	GDGCHC	2 cut(s)	252, 314
Bsp143I	GATC	3 cut(s)	336, 376, 395
BspACI	CCGC	7 cut(s)	17, 20, 40, 76, 105, 227, 1136
BspANI	GGCC	7 cut(s)	16, 93, 111, 245, 263, 390, 743
BspCNI	CTCAG	5 cut(s)	547, 891, 896, 958, 1025
BspLI	GGNNCC	4 cut(s)	6, 15, 244, 1110
BspMAI	CTGCAG	1 cut(s)	347
BspOI	GCTAGC	2 cut(s)	695, 716
BspPI	GGATC	2 cut(s)	344, 384
BspT107I	GGYRCC	1 cut(s)	1108
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	819
BsrFI	RCCGGY	3 cut(s)	138, 365, 386
BssAI	RCCGGY	3 cut(s)	138, 365, 386
BssECI	CCNNGG	4 cut(s)	11, 112, 728, 1113
BssMI	GATC	3 cut(s)	336, 376, 395
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	1113
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	235, 667
BstACI	GRCGYC	1 cut(s)	59
BstC8I	GCNNGC	7 cut(s)	48, 57, 140, 363, 693, 714, 979
BstDEI	CTNAG	5 cut(s)	534, 883, 899, 945, 1012
BstDSI	CCRYGG	1 cut(s)	112
BstKTI	GATC	3 cut(s)	339, 379, 398
BstMBI	GATC	3 cut(s)	336, 376, 395
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 52, 56, 135, 194
BstNI	CCWGG	1 cut(s)	729
BstNSI	RCATGY	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	10, 727
BstSFI	CTRYAG	2 cut(s)	343, 1193
BstV1I	GCAGC	4 cut(s)	30, 129, 175, 513
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	7 cut(s)	16, 93, 111, 245, 263, 390, 743
BtgI	CCRYGG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	1 cut(s)	807
Cac8I	GCNNGC	7 cut(s)	48, 57, 140, 363, 693, 714, 979
Cfr10I	RCCGGY	3 cut(s)	138, 365, 386
Cfr13I	GGNCC	2 cut(s)	14, 243
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	5 cut(s)	620, 1032, 1075, 1099, 1109
CviAII	CATG	4 cut(s)	198, 476, 670, 745
CviQI	GTAC	5 cut(s)	620, 1032, 1075, 1099, 1109
DdeI	CTNAG	5 cut(s)	534, 883, 899, 945, 1012
DpnI	GATC	3 cut(s)	338, 378, 397
DpnII	GATC	3 cut(s)	336, 376, 395
DraI	TTTAAA	1 cut(s)	909
EaeI	YGGCCR	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	91
Ecl136II	GAGCTC	2 cut(s)	250, 312
Eco130I	CCWWGG	1 cut(s)	1113
Eco24I	GRGCYC	2 cut(s)	252, 314
Eco53kI	GAGCTC	2 cut(s)	250, 312
EcoICRI	GAGCTC	2 cut(s)	250, 312
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	1113
EcoT38I	GRGCYC	2 cut(s)	252, 314
ErhI	CCWWGG	1 cut(s)	1113
FaeI	CATG	4 cut(s)	201, 479, 673, 748
FatI	CATG	4 cut(s)	197, 475, 669, 744
FauNDI	CATATG	1 cut(s)	1079
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	7 cut(s)	17, 20, 41, 44, 143, 189, 502
FriOI	GRGCYC	2 cut(s)	252, 314
Fsp4HI	GCNGC	7 cut(s)	17, 20, 41, 44, 143, 189, 502
FspBI	CTAG	3 cut(s)	692, 713, 852
GluI	GCNGC	7 cut(s)	17, 20, 41, 44, 143, 189, 502
GsaI	CCCAGC	1 cut(s)	555
HaeIII	GGCC	7 cut(s)	16, 93, 111, 245, 263, 390, 743
HapII	CCGG	4 cut(s)	11, 139, 366, 387
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	201, 479, 673, 748
HindIII	AAGCTT	1 cut(s)	921
HinfI	GANTC	5 cut(s)	25, 65, 682, 824, 1144
HpaII	CCGG	4 cut(s)	11, 139, 366, 387
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	436, 1101
Hpy188I	TCNGA	8 cut(s)	64, 150, 173, 272, 395, 829, 837, 1149
Hpy188III	TCNNGA	5 cut(s)	214, 637, 686, 707, 937
Hpy8I	GTNNAC	2 cut(s)	436, 1101
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	313, 856, 1059
HpyCH4III	ACNGT	2 cut(s)	235, 667
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	8 cut(s)	191, 197, 345, 501, 626, 812, 1083, 1123
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 52, 56, 135, 194
HpyF3I	CTNAG	5 cut(s)	534, 883, 899, 945, 1012
HpySE526I	ACGT	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	201, 479, 673, 748
KpnI	GGTACC	1 cut(s)	1112
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	336, 376, 395
LmnI	GCTCC	3 cut(s)	4, 37, 688
Lsp1109I	GCAGC	4 cut(s)	30, 129, 175, 513
LweI	GCATC	1 cut(s)	750
MaeI	CTAG	3 cut(s)	692, 713, 852
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	338, 378, 397
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	3 cut(s)	336, 376, 395
MboII	GAAGA	4 cut(s)	331, 414, 671, 850
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	252, 314
MluCI	AATT	9 cut(s)	183, 273, 521, 559, 642, 767, 911, 961, 993
MlyI	GAGTC	3 cut(s)	74, 833, 1138
MmeI	TCCRAC	3 cut(s)	12, 42, 460
MnlI	CCTC	9 cut(s)	18, 28, 156, 253, 302, 401, 733, 1041, 1082
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	558, 908, 1071
MslI	CAYNNNNRTG	4 cut(s)	196, 587, 812, 1023
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	4 cut(s)	11, 139, 366, 387
MspR9I	CCNGG	2 cut(s)	12, 729
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	5 cut(s)	13, 52, 56, 135, 194
NaeI	GCCGGC	1 cut(s)	140
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	1079
NdeII	GATC	3 cut(s)	336, 376, 395
NgoMIV	GCCGGC	1 cut(s)	138
NheI	GCTAGC	2 cut(s)	691, 712
NlaIII	CATG	4 cut(s)	201, 479, 673, 748
NlaIV	GGNNCC	4 cut(s)	6, 15, 244, 1110
NmeAIII	GCCGAG	2 cut(s)	271, 333
NspI	RCATGY	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	311
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	25, 682
PkrI	GCNGC	7 cut(s)	18, 21, 42, 45, 144, 190, 503
PleI	GAGTC	3 cut(s)	73, 832, 1138
PpsI	GAGTC	3 cut(s)	73, 832, 1138
PshBI	ATTAAT	1 cut(s)	558
Psp124BI	GAGCTC	2 cut(s)	252, 314
Psp6I	CCWGG	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	4 cut(s)	6, 15, 244, 1110
PspPI	GGNCC	2 cut(s)	14, 243
PstI	CTGCAG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	5 cut(s)	621, 1033, 1076, 1100, 1110
RsaNI	GTAC	5 cut(s)	620, 1032, 1075, 1099, 1109
RseI	CAYNNNNRTG	4 cut(s)	196, 587, 812, 1023
SacI	GAGCTC	2 cut(s)	252, 314
SaqAI	TTAA	3 cut(s)	558, 908, 1071
SatI	GCNGC	7 cut(s)	17, 20, 41, 44, 143, 189, 502
Sau3AI	GATC	3 cut(s)	336, 376, 395
Sau96I	GGNCC	2 cut(s)	14, 243
SchI	GAGTC	3 cut(s)	74, 833, 1138
ScrFI	CCNGG	2 cut(s)	12, 729
SduI	GDGCHC	2 cut(s)	252, 314
SfaNI	GCATC	1 cut(s)	750
SfcI	CTRYAG	2 cut(s)	343, 1193
SmiMI	CAYNNNNRTG	4 cut(s)	196, 587, 812, 1023
SpeI	ACTAGT	1 cut(s)	851
Sse9I	AATT	9 cut(s)	183, 273, 521, 559, 642, 767, 911, 961, 993
SsiI	CCGC	7 cut(s)	17, 20, 40, 76, 105, 227, 1136
SspMI	CTAG	3 cut(s)	692, 713, 852
SstI	GAGCTC	2 cut(s)	252, 314
StyD4I	CCNGG	2 cut(s)	10, 727
StyI	CCWWGG	1 cut(s)	1113
TaaI	ACNGT	2 cut(s)	235, 667
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	4 cut(s)	86, 123, 258, 1063
TasI	AATT	9 cut(s)	183, 273, 521, 559, 642, 767, 911, 961, 993
TatI	WGTACW	2 cut(s)	619, 1074
TauI	GCSGC	3 cut(s)	19, 22, 43
TfiI	GAWTC	2 cut(s)	25, 682
Tru1I	TTAA	3 cut(s)	558, 908, 1071
Tru9I	TTAA	3 cut(s)	558, 908, 1071
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	4 cut(s)	43, 142, 188, 501
TspDTI	ATGAA	5 cut(s)	109, 266, 482, 940, 1007
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	814
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	3 cut(s)	273, 911, 961
XceI	RCATGY	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	3 cut(s)	692, 713, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.